mRNA_L-elsbetiae_contig13976.2975.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13976.2975.1
Unique NamemRNA_L-elsbetiae_contig13976.2975.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13976.2975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13976contigL-elsbetiae_contig13976:1584..4034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1636
Cds size1611
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13976.2975.1prot_L-elsbetiae_contig13976.2975.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13976 1584..4009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.1046-CDS-L-elsbetiae_contig13976:1583..22501622815550.1046-CDS-L-elsbetiae_contig13976:1583..2250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13976 1584..2250 -
1691682953.6317441-CDS-L-elsbetiae_contig13976:1583..22501691682953.6317441-CDS-L-elsbetiae_contig13976:1583..2250Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13976 1584..2250 -
1622815550.1165543-CDS-L-elsbetiae_contig13976:2447..29571622815550.1165543-CDS-L-elsbetiae_contig13976:2447..2957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13976 2448..2957 -
1691682953.644814-CDS-L-elsbetiae_contig13976:2447..29571691682953.644814-CDS-L-elsbetiae_contig13976:2447..2957Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13976 2448..2957 -
1622815550.1269164-CDS-L-elsbetiae_contig13976:3575..40091622815550.1269164-CDS-L-elsbetiae_contig13976:3575..4009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13976 3576..4009 -
1691682953.655579-CDS-L-elsbetiae_contig13976:3575..40091691682953.655579-CDS-L-elsbetiae_contig13976:3575..4009Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13976 3576..4009 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815550.1403077-UTR-L-elsbetiae_contig13976:4009..40341622815550.1403077-UTR-L-elsbetiae_contig13976:4009..4034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13976 4010..4034 -
1691682953.66633-UTR-L-elsbetiae_contig13976:4009..40341691682953.66633-UTR-L-elsbetiae_contig13976:4009..4034Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13976 4010..4034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13976.2975.1

>prot_L-elsbetiae_contig13976.2975.1 ID=prot_L-elsbetiae_contig13976.2975.1|Name=mRNA_L-elsbetiae_contig13976.2975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=537bp
MYINWAVISLLLLLPSSATLPPKKKNKNTSIAGRQPSISSHEHGKGRVDN
PVEAAIRLERRQHVEAQTLAQQTASHAESQGRQSLDTEGRAASDARTAAS
RAAERAQRRKTEDVARRRKARNEAAVTAGRKRKADGEIDPAADSSAPQLS
TRDAVQNTATRKAALRREASQAEASVRATAKATAKQKTARAKAAARAAAA
TAKDAAKQGTARAKAAARAAAATAKEAAKQETAQATAAAAATAKEAAKQE
TARGKAAARAAAATAKEAAKQETARAKVAARAAAATAKEAAKQEIARATA
AARAAATAARSAEQRRGVYAPTVTATPVAAFDHPEGKFAVDPAWPEGNER
RQEVVVHTRRALGMDWTRSVECFVDHHDEGEILPIMSARWRDPTVFMIPH
RGPSEMQAALDEVFRGGFCYDFLNQAVSVCPWCEEMPEVDCTWRFHNWTA
ANAPDRLFLSSAAVDIDHDFGVPPNASQSIVMGAAYSLVSVVYHVLGGNH
YVTQFKLQGSWLKYDCVLGGCTTLAFGEAGILHLCAH
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mRNA from alignment at L-elsbetiae_contig13976:1584..4034-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13976.2975.1 ID=mRNA_L-elsbetiae_contig13976.2975.1|Name=mRNA_L-elsbetiae_contig13976.2975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2451bp|location=Sequence derived from alignment at L-elsbetiae_contig13976:1584..4034- (Laminarionema elsbetiae ELsaHSoW15)
AGCACGTCCTACATATATCACCTCCATGTACATCAACTGGGCTGTTATCT
CCCTTCTACTTCTGTTGCCGTCAAGTGCGACACTGCCTCCAAAGAAAAAA
AACAAGAATACATCAATTGCCGGCCGACAACCTTCCATTTCCAGCCATGA
ACACGGAAAAGGTAGAGTGGACAACCCTGTTGAGGCCGCCATCAGGCTGG
AACGGCGTCAGCATGTAGAGGCTCAAACACTTGCCCAGCAGACTGCCAGC
CACGCGGAGTCTCAAGGTCGTCAGAGCCTGGACACGGAGGGGAGAGCCGC
CTCGGATGCTCGGACTGCCGCAAGTAGAGCGGCCGAGAGAGCACAGCGCC
GAAAGACGGAGGACGTGGCTCGAAGAAGGAAGGCGAGAAACGAGGCAGCC
GTGACGGCAGGTCGCAAGCGCAAGGCGGATGGTGAAATCGACCCCGCTGC
CGACAGTAGGTGAGAAGTTAGTTGGCTACAAGTCTAGATAGATAGACAGC
AGGTGAGAAGTTAGTTGGCTACAAGTCTAGATAGTCTATGCCGACAGCTG
GTGAGAAGTTGGCTACATAGTCTAGAGAGTCTACATGTACCCCCTTTAGA
GATATGTATGTAGTCTAGTCTTCGAGCAGGGCGTACGTAGAAATGTAGCA
CATAACACCGTCGAAAATGTGGCTCGACGGTATGTATGATGAAACGAATA
AGGAACTGCAATGTCCACATAGATACAGCAGTCATGACACATGTCACTCC
CTTTTTTTTCCGTGACAGCTGGTGGTGAGAAGTTGGCTACATAGTCTAGA
GAGTCTATCTACACGTACAGCAAACCCTCTTCTATGCCGACAGCTGGTGA
GAAGTTGGCTACATAGTCTAGAGAGTCTACACGTACAACAAACCCACTTT
AGAGCTATGTATGTTATCTTCGAGCAGGGCGTACGTAGAAATGTAGCACA
TAACACCGTCGAAAATGTGGCTCAACGGTATGTATGATGAAACGAATAAG
GAAATGCAATGTCCTACATAGATACAGCAGTCATGACACATGTCACTCCC
TTTTTTTCCGTTTTTTTGTTCATACAGTGCTCCCCAACTATCCACGCGTG
ACGCGGTCCAAAATACGGCCACACGCAAGGCCGCGTTGAGGAGGGAGGCT
TCGCAAGCCGAAGCGTCCGTGAGAGCGACAGCCAAGGCGACAGCCAAGCA
AAAGACTGCGCGAGCCAAAGCTGCAGCGAGAGCTGCCGCTGCAACAGCTA
AGGACGCAGCCAAACAAGGGACTGCGCGAGCCAAAGCTGCGGCGAGAGCT
GCGGCTGCAACAGCGAAGGAGGCAGCCAAGCAAGAGACTGCGCAAGCCAC
AGCCGCGGCCGCCGCAACAGCGAAGGAGGCCGCCAAGCAAGAGACTGCGC
GAGGCAAAGCTGCAGCGAGAGCTGCGGCTGCAACAGCTAAGGAGGCAGCC
AAGCAAGAGACTGCGCGAGCCAAAGTTGCGGCGAGAGCTGCGGCTGCTAC
AGCGAAGGAGGCAGCCAAGCAAGAGATTGCGCGAGCCACAGCTGCGGCGA
GAGCTGCGGCGACCGCTGCTCGGTCGGCAGAGCAAAGGTTCAAACGATTA
CGTTAATTTGAACTTGCACTCTTGGTGTGTGTTGTCTCTTCCTACTTTTG
AAATTGTCGTAAAAACTATTTTCTGGTATGTTGTTTACCCCAAAGTGTTT
GCAAATCGAACACATTTCAATCTCGCTTGTCACGTGAGTTTGCACATGTA
ACACATCTCAATCTCGCTTGTCTTTATACCCCAGGCGTGGGGTCTATGCC
CCAACCGTGACGGCCACACCTGTTGCGGCTTTCGACCATCCTGAGGGCAA
GTTCGCCGTCGACCCTGCATGGCCTGAGGGAAACGAGCGAAGGCAGGAAG
TGGTCGTGCACACGAGGAGAGCCTTGGGAATGGACTGGACACGGAGTGTC
GAGTGCTTTGTCGATCACCACGACGAGGGAGAGATATTGCCGATTATGTC
TGCGAGATGGCGAGACCCCACTGTTTTCATGATTCCCCACCGTGGTCCAA
GCGAGATGCAGGCTGCGTTGGACGAAGTATTTCGTGGCGGCTTTTGCTAC
GATTTTCTCAACCAAGCGGTTTCGGTTTGCCCTTGGTGCGAGGAGATGCC
TGAAGTAGACTGCACTTGGCGGTTCCACAACTGGACTGCTGCGAACGCCC
CAGACCGGTTATTTTTGTCCTCAGCAGCTGTGGACATAGACCATGATTTC
GGTGTTCCACCCAACGCGTCGCAGTCTATTGTGATGGGCGCTGCGTACTC
TCTGGTGTCGGTCGTTTACCACGTTCTTGGCGGGAACCATTATGTCACCC
AGTTCAAGTTGCAGGGAAGTTGGTTGAAGTATGACTGTGTGCTTGGGGGC
TGTACGACATTGGCATTCGGGGAAGCAGGTATTCTACACCTATGTGCGCA
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13976:1584..4034-

>mRNA_L-elsbetiae_contig13976.2975.1 ID=mRNA_L-elsbetiae_contig13976.2975.1|Name=mRNA_L-elsbetiae_contig13976.2975.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3222bp|location=Sequence derived from alignment at L-elsbetiae_contig13976:1584..4034- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACATCAACTGGGCTGTTATCTCCCTTCTACTTCTGTTGCCGTCAAG
TGCGACACTGCCTCCAAAGAAAAAAAACAAGAATACATCAATTGCCGGCC
GACAACCTTCCATTTCCAGCCATGAACACGGAAAAGGTAGAGTGGACAAC
CCTGTTGAGGCCGCCATCAGGCTGGAACGGCGTCAGCATGTAGAGGCTCA
AACACTTGCCCAGCAGACTGCCAGCCACGCGGAGTCTCAAGGTCGTCAGA
GCCTGGACACGGAGGGGAGAGCCGCCTCGGATGCTCGGACTGCCGCAAGT
AGAGCGGCCGAGAGAGCACAGCGCCGAAAGACGGAGGACGTGGCTCGAAG
AAGGAAGGCGAGAAACGAGGCAGCCGTGACGGCAGGTCGCAAGCGCAAGG
CGGATGGTGAAATCGACCCCGCTGCCGACAGTAGATGTACATCAACTGGG
CTGTTATCTCCCTTCTACTTCTGTTGCCGTCAAGTGCGACACTGCCTCCA
AAGAAAAAAAACAAGAATACATCAATTGCCGGCCGACAACCTTCCATTTC
CAGCCATGAACACGGAAAAGGTAGAGTGGACAACCCTGTTGAGGCCGCCA
TCAGGCTGGAACGGCGTCAGCATGTAGAGGCTCAAACACTTGCCCAGCAG
ACTGCCAGCCACGCGGAGTCTCAAGGTCGTCAGAGCCTGGACACGGAGGG
GAGAGCCGCCTCGGATGCTCGGACTGCCGCAAGTAGAGCGGCCGAGAGAG
CACAGCGCCGAAAGACGGAGGACGTGGCTCGAAGAAGGAAGGCGAGAAAC
GAGGCAGCCGTGACGGCAGGTCGCAAGCGCAAGGCGGATGGTGAAATCGA
CCCCGCTGCCGACAGTAGTGCTCCCCAACTATCCACGCGTGACGCGGTCC
AAAATACGGCCACACGCAAGGCCGCGTTGAGGAGGGAGGCTTCGCAAGCC
GAAGCGTCCGTGAGAGCGACAGCCAAGGCGACAGCCAAGCAAAAGACTGC
GCGAGCCAAAGCTGCAGCGAGAGCTGCCGCTGCAACAGCTAAGGACGCAG
CCAAACAAGGGACTGCGCGAGCCAAAGCTGCGGCGAGAGCTGCGGCTGCA
ACAGCGAAGGAGGCAGCCAAGCAAGAGACTGCGCAAGCCACAGCCGCGGC
CGCCGCAACAGCGAAGGAGGCCGCCAAGCAAGAGACTGCGCGAGGCAAAG
CTGCAGCGAGAGCTGCGGCTGCAACAGCTAAGGAGGCAGCCAAGCAAGAG
ACTGCGCGAGCCAAAGTTGCGGCGAGAGCTGCGGCTGCTACAGCGAAGGA
GGCAGCCAAGCAAGAGATTGCGCGAGCCACAGCTGCGGCGAGAGCTGCGG
CGACCGCTGCTCGGTCGGCAGAGCAAAGTGCTCCCCAACTATCCACGCGT
GACGCGGTCCAAAATACGGCCACACGCAAGGCCGCGTTGAGGAGGGAGGC
TTCGCAAGCCGAAGCGTCCGTGAGAGCGACAGCCAAGGCGACAGCCAAGC
AAAAGACTGCGCGAGCCAAAGCTGCAGCGAGAGCTGCCGCTGCAACAGCT
AAGGACGCAGCCAAACAAGGGACTGCGCGAGCCAAAGCTGCGGCGAGAGC
TGCGGCTGCAACAGCGAAGGAGGCAGCCAAGCAAGAGACTGCGCAAGCCA
CAGCCGCGGCCGCCGCAACAGCGAAGGAGGCCGCCAAGCAAGAGACTGCG
CGAGGCAAAGCTGCAGCGAGAGCTGCGGCTGCAACAGCTAAGGAGGCAGC
CAAGCAAGAGACTGCGCGAGCCAAAGTTGCGGCGAGAGCTGCGGCTGCTA
CAGCGAAGGAGGCAGCCAAGCAAGAGATTGCGCGAGCCACAGCTGCGGCG
AGAGCTGCGGCGACCGCTGCTCGGTCGGCAGAGCAAAGGCGTGGGGTCTA
TGCCCCAACCGTGACGGCCACACCTGTTGCGGCTTTCGACCATCCTGAGG
GCAAGTTCGCCGTCGACCCTGCATGGCCTGAGGGAAACGAGCGAAGGCAG
GAAGTGGTCGTGCACACGAGGAGAGCCTTGGGAATGGACTGGACACGGAG
TGTCGAGTGCTTTGTCGATCACCACGACGAGGGAGAGATATTGCCGATTA
TGTCTGCGAGATGGCGAGACCCCACTGTTTTCATGATTCCCCACCGTGGT
CCAAGCGAGATGCAGGCTGCGTTGGACGAAGTATTTCGTGGCGGCTTTTG
CTACGATTTTCTCAACCAAGCGGTTTCGGTTTGCCCTTGGTGCGAGGAGA
TGCCTGAAGTAGACTGCACTTGGCGGTTCCACAACTGGACTGCTGCGAAC
GCCCCAGACCGGTTATTTTTGTCCTCAGCAGCTGTGGACATAGACCATGA
TTTCGGTGTTCCACCCAACGCGTCGCAGTCTATTGTGATGGGCGCTGCGT
ACTCTCTGGTGTCGGTCGTTTACCACGTTCTTGGCGGGAACCATTATGTC
ACCCAGTTCAAGTTGCAGGGAAGTTGGTTGAAGTATGACTGTGTGCTTGG
GGGCTGTACGACATTGGCATTCGGGGAAGCAGGTATTCTACACCTATGTG
CGCACGCGTGGGGTCTATGCCCCAACCGTGACGGCCACACCTGTTGCGGC
TTTCGACCATCCTGAGGGCAAGTTCGCCGTCGACCCTGCATGGCCTGAGG
GAAACGAGCGAAGGCAGGAAGTGGTCGTGCACACGAGGAGAGCCTTGGGA
ATGGACTGGACACGGAGTGTCGAGTGCTTTGTCGATCACCACGACGAGGG
AGAGATATTGCCGATTATGTCTGCGAGATGGCGAGACCCCACTGTTTTCA
TGATTCCCCACCGTGGTCCAAGCGAGATGCAGGCTGCGTTGGACGAAGTA
TTTCGTGGCGGCTTTTGCTACGATTTTCTCAACCAAGCGGTTTCGGTTTG
CCCTTGGTGCGAGGAGATGCCTGAAGTAGACTGCACTTGGCGGTTCCACA
ACTGGACTGCTGCGAACGCCCCAGACCGGTTATTTTTGTCCTCAGCAGCT
GTGGACATAGACCATGATTTCGGTGTTCCACCCAACGCGTCGCAGTCTAT
TGTGATGGGCGCTGCGTACTCTCTGGTGTCGGTCGTTTACCACGTTCTTG
GCGGGAACCATTATGTCACCCAGTTCAAGTTGCAGGGAAGTTGGTTGAAG
TATGACTGTGTGCTTGGGGGCTGTACGACATTGGCATTCGGGGAAGCAGG
TATTCTACACCTATGTGCGCAC
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