prot_L-elsbetiae_contig13972.2971.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13972.2971.1
Unique Nameprot_L-elsbetiae_contig13972.2971.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length169
Homology
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: D8LGZ7_ECTSI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ7_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 1.960e-109
Identity = 165/168 (98.21%), Postives = 165/168 (98.21%), Query Frame = 0
Query:    1 MKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            MKGGAGPYPGLFLNS GARMCRPVLHL SGRMEWIGPM QQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER
Sbjct:  577 MKGGAGPYPGLFLNSEGARMCRPVLHLQSGRMEWIGPMAQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 744          
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A7S2EG60_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EG60_TRICV)

HSP 1 Score: 260 bits (664), Expect = 5.030e-86
Identity = 124/163 (76.07%), Postives = 144/163 (88.34%), Query Frame = 0
Query:    6 GPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            GP+PGLFL +G AR+ RPVL   +GR E+IGPMEQ FM+IACL +DVR G+TTH ELDPTNMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTPAH L P+R DNK+Y++  PQA +VQT RHGE+++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ER
Sbjct:   25 GPFPGLFLFTGMARVVRPVLQRSTGRTEYIGPMEQPFMDIACLPEDVREGVTTHMELDPTNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSL-PNRPDNKLYRLQNPQAPVVQTARHGEFRMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYER 186          
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 275 bits (702), Expect = 5.580e-83
Identity = 128/168 (76.19%), Postives = 148/168 (88.10%), Query Frame = 0
Query:    1 MKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            MK G+GP+PGLFL +G +RM RPVL++   + EWIGP+EQ FMEIACLA + +    TH E+DPTNMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCL PH+TDNKMY++LFPQA +V TRRH E+Q+D+YPQGTNAVVAVISYTGFDMEDAMILNKS+FER
Sbjct:  613 MKKGSGPFPGLFLFTGASRMIRPVLNIEFCKREWIGPLEQPFMEIACLASEAKGTGATHCEIDPTNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLYPHKTDNKMYRILFPQAPLVMTRRHREFQMDNYPQGTNAVVAVISYTGFDMEDAMILNKSAFER 780          
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A7R9U7R0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R0_9STRA)

HSP 1 Score: 261 bits (668), Expect = 8.150e-82
Identity = 129/165 (78.18%), Postives = 142/165 (86.06%), Query Frame = 0
Query:    4 GAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            G GP+ GLFL S   RM RPVL   SGR+E IGP+EQ  +E+ACL ++V  G TTH+ELDPTNMLSL+ASLTPFSD NQSPRNMYQCQMGKQTMGTPAHC+ PHRTDNKMYK+  PQA IVQTRRH EYQLD+YPQGTNAVVAVISYTGFDMEDAMILNK+SFER
Sbjct:   24 GLGPFAGLFLASAPGRMVRPVLQRASGRIELIGPLEQTHLEVACLPEEVHEG-TTHQELDPTNMLSLIASLTPFSDQNQSPRNMYQCQMGKQTMGTPAHCM-PHRTDNKMYKIQTPQAPIVQTRRHAEYQLDEYPQGTNAVVAVISYTGFDMEDAMILNKASFER 186          
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA)

HSP 1 Score: 268 bits (685), Expect = 2.080e-80
Identity = 127/163 (77.91%), Postives = 145/163 (88.96%), Query Frame = 0
Query:    6 GPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            GPYPGLFL +G AR+ RPVLH  SG+ E IGPMEQ FM+IACLA+DVR G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L PHRTDNK+Y++  PQAAI QT RHG+Y++D+YP GTNAVVAV+SYTGFDMEDAMILNKS++ER
Sbjct:  669 GPYPGLFLFTGAARLVRPVLHRASGKEEMIGPMEQPFMDIACLAEDVREGITTHQELDPMNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPCHSL-PHRTDNKLYRLQNPQAAIAQTARHGKYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSAYER 830          
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: K0RK47_THAOC (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RK47_THAOC)

HSP 1 Score: 258 bits (660), Expect = 2.480e-78
Identity = 125/168 (74.40%), Postives = 145/168 (86.31%), Query Frame = 0
Query:    1 MKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            MKGG  PYPGLFL +  AR+ RPVL   +GR E+IGPMEQ FM+IACL +D+R G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L P+R+DNK+YK+  PQA +VQT  HGEY++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ER
Sbjct:  273 MKGG--PYPGLFLFTVAARVVRPVLQRATGRTEYIGPMEQPFMDIACLPEDIREGITTHQELDPANMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPGHSL-PYRSDNKLYKIQTPQAPLVQTAVHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYER 437          
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A6U3PLE0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PLE0_9STRA)

HSP 1 Score: 262 bits (669), Expect = 3.940e-78
Identity = 123/163 (75.46%), Postives = 142/163 (87.12%), Query Frame = 0
Query:    6 GPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            GPYPGL+L +  AR+ RPVLH  +G  E IGPMEQ F++IACL  D+R G+TTH+ELDPTNMLSL++SLTPFSDYNQSPRNMYQCQMGKQTMGTP H L PHRTDNK+Y++  PQA +VQT RHGEY++D+YP GTNAVVAV+SYTGFDMEDAMILNKSSFER
Sbjct:  695 GPYPGLYLFTSAARLVRPVLHRSTGCAELIGPMEQPFLDIACLPQDIREGITTHQELDPTNMLSLISSLTPFSDYNQSPRNMYQCQMGKQTMGTPVHSL-PHRTDNKLYRLQNPQAPVVQTSRHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSFER 856          
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: B8CA95_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA95_THAPS)

HSP 1 Score: 259 bits (661), Expect = 1.480e-77
Identity = 126/168 (75.00%), Postives = 144/168 (85.71%), Query Frame = 0
Query:    1 MKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            MKGG  PYPGLFL +  AR+ RPVL   +GR E+IGPMEQ FM+IACL +D+R G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L P+R DNKMYK+  PQA +VQT  HGEY++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ER
Sbjct:  508 MKGG--PYPGLFLFTIAARVVRPVLQRATGRTEYIGPMEQPFMDIACLPEDIREGITTHQELDPANMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPCHSL-PYRADNKMYKIQTPQAPLVQTAVHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYER 672          
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA)

HSP 1 Score: 259 bits (662), Expect = 2.960e-77
Identity = 126/163 (77.30%), Postives = 143/163 (87.73%), Query Frame = 0
Query:    6 GPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            GP PGLFL SG ARM RPVLHL +G +E+IGPMEQ FME+A L +DVR G TTH+ELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTP     PHRTDNK+Y++L PQA IVQTRRH EY +D++PQGTNAVVAVISYTG+DMEDAMIL+K+S++R
Sbjct:  671 GPAPGLFLFSGAARMVRPVLHLETGCVEYIGPMEQVFMEVALLPEDVRAGETTHQELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPTTSY-PHRTDNKLYRILTPQAPIVQTRRHAEYGMDEFPQGTNAVVAVISYTGYDMEDAMILSKASYDR 832          
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A7S0CJA4_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CJA4_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.720e-76
Identity = 115/163 (70.55%), Postives = 136/163 (83.44%), Query Frame = 0
Query:    6 GPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 168
            GPYPGL+L +   R  RPVLH  +G++E IGPMEQ F+ IACL +DV  G+TTH ELDPTN+L L++ +TPFSDYNQSPRNMYQCQMGKQTMGTPAH L PHR DNK+Y++  PQA IVQT +H  Y++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ER
Sbjct:   52 GPYPGLYLFTDAGRCTRPVLHRATGKVELIGPMEQPFLTIACLPEDVSEGITTHMELDPTNILDLISGMTPFSDYNQSPRNMYQCQMGKQTMGTPAHSL-PHRPDNKLYRLQNPQAPIVQTAKHSLYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYER 213          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGZ7_ECTSI1.960e-10998.21DNA-directed RNA polymerase (Fragment) n=1 Tax=Ect... [more]
A0A7S2EG60_TRICV5.030e-8676.07DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A835YVF9_9STRA5.580e-8376.19DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7R9U7R0_9STRA8.150e-8278.18DNA-directed RNA polymerase n=1 Tax=Pinguiococcus ... [more]
A0A7S3V7B4_9STRA2.080e-8077.91DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
K0RK47_THAOC2.480e-7874.40DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A6U3PLE0_9STRA3.940e-7875.46DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
B8CA95_THAPS1.480e-7775.00DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
W7TET2_9STRA2.960e-7777.30DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]
A0A7S0CJA4_9STRA3.720e-7670.55DNA-directed RNA polymerase (Fragment) n=1 Tax=Pro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014724RNA polymerase Rpb2, OB-foldGENE3D2.40.50.150coord: 102..118
e-value: 4.0E-41
score: 143.4
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 71..168
e-value: 2.0E-27
score: 96.3
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 72..168
e-value: 4.0E-41
score: 143.4
NoneNo IPR availablePANTHERPTHR20856:SF5DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA2coord: 5..168
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 8..168
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 5..168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13972contigL-elsbetiae_contig13972:1238..4695 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13972.2971.1mRNA_L-elsbetiae_contig13972.2971.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13972 1238..4708 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13972.2971.1 ID=prot_L-elsbetiae_contig13972.2971.1|Name=mRNA_L-elsbetiae_contig13972.2971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLAD
DVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTP
AHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISY
TGFDMEDAMILNKSSFER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014724RNA_pol_RPB2_OB-fold
IPR007120DNA-dir_RNAP_su2_dom
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR015712DNA-dir_RNA_pol_su2