mRNA_L-elsbetiae_contig13972.2971.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13972.2971.1
Unique NamemRNA_L-elsbetiae_contig13972.2971.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: D8LGZ7_ECTSI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGZ7_ECTSI)

HSP 1 Score: 355 bits (911), Expect = 1.330e-113
Identity = 169/172 (98.26%), Postives = 169/172 (98.26%), Query Frame = 2 
Query:    2 WVPPMKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            WVPPMKGGAGPYPGLFLNS GARMCRPVLHL SGRMEWIGPM QQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER
Sbjct:  573 WVPPMKGGAGPYPGLFLNSEGARMCRPVLHLQSGRMEWIGPMAQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 744
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A7S2EG60_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EG60_TRICV)

HSP 1 Score: 265 bits (677), Expect = 6.200e-88
Identity = 127/172 (73.84%), Postives = 148/172 (86.05%), Query Frame = 2 
Query:    2 WVPPMKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            +VPP     GP+PGLFL +G AR+ RPVL   +GR E+IGPMEQ FM+IACL +DVR G+TTH ELDPTNMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTPAH L P+R DNK+Y++  PQA +VQT RHGE+++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ER
Sbjct:   16 FVPPRSDRGGPFPGLFLFTGMARVVRPVLQRSTGRTEYIGPMEQPFMDIACLPEDVREGVTTHMELDPTNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHSL-PNRPDNKLYRLQNPQAPVVQTARHGEFRMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYER 186
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A835YVF9_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF9_9STRA)

HSP 1 Score: 280 bits (717), Expect = 5.110e-85
Identity = 130/171 (76.02%), Postives = 151/171 (88.30%), Query Frame = 2 
Query:    5 VPPMKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            +PPMK G+GP+PGLFL +G +RM RPVL++   + EWIGP+EQ FMEIACLA + +    TH E+DPTNMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCL PH+TDNKMY++LFPQA +V TRRH E+Q+D+YPQGTNAVVAVISYTGFDMEDAMILNKS+FER
Sbjct:  610 LPPMKKGSGPFPGLFLFTGASRMIRPVLNIEFCKREWIGPLEQPFMEIACLASEAKGTGATHCEIDPTNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLYPHKTDNKMYRILFPQAPLVMTRRHREFQMDNYPQGTNAVVAVISYTGFDMEDAMILNKSAFER 780
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A7R9U7R0_9STRA (DNA-directed RNA polymerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7R0_9STRA)

HSP 1 Score: 266 bits (681), Expect = 1.100e-83
Identity = 131/172 (76.16%), Postives = 146/172 (84.88%), Query Frame = 2 
Query:    2 WVPPMKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            + PP + G GP+ GLFL S   RM RPVL   SGR+E IGP+EQ  +E+ACL ++V  G TTH+ELDPTNMLSL+ASLTPFSD NQSPRNMYQCQMGKQTMGTPAHC+ PHRTDNKMYK+  PQA IVQTRRH EYQLD+YPQGTNAVVAVISYTGFDMEDAMILNK+SFER
Sbjct:   17 FFPPRQSGLGPFAGLFLASAPGRMVRPVLQRASGRIELIGPLEQTHLEVACLPEEVHEG-TTHQELDPTNMLSLIASLTPFSDQNQSPRNMYQCQMGKQTMGTPAHCM-PHRTDNKMYKIQTPQAPIVQTRRHAEYQLDEYPQGTNAVVAVISYTGFDMEDAMILNKASFER 186
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A7S3V7B4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7B4_9STRA)

HSP 1 Score: 268 bits (685), Expect = 2.440e-80
Identity = 127/163 (77.91%), Postives = 145/163 (88.96%), Query Frame = 2 
Query:   29 GPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            GPYPGLFL +G AR+ RPVLH  SG+ E IGPMEQ FM+IACLA+DVR G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L PHRTDNK+Y++  PQAAI QT RHG+Y++D+YP GTNAVVAV+SYTGFDMEDAMILNKS++ER
Sbjct:  669 GPYPGLFLFTGAARLVRPVLHRASGKEEMIGPMEQPFMDIACLAEDVREGITTHQELDPMNMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPCHSL-PHRTDNKLYRLQNPQAAIAQTARHGKYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSAYER 830
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: K0RK47_THAOC (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RK47_THAOC)

HSP 1 Score: 261 bits (666), Expect = 3.940e-79
Identity = 127/173 (73.41%), Postives = 149/173 (86.13%), Query Frame = 2 
Query:    2 WVPP-MKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            ++PP MKGG  PYPGLFL +  AR+ RPVL   +GR E+IGPMEQ FM+IACL +D+R G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L P+R+DNK+YK+  PQA +VQT  HGEY++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ER
Sbjct:  268 FIPPGMKGG--PYPGLFLFTVAARVVRPVLQRATGRTEYIGPMEQPFMDIACLPEDIREGITTHQELDPANMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPGHSL-PYRSDNKLYKIQTPQAPLVQTAVHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYER 437
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: B8CA95_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CA95_THAPS)

HSP 1 Score: 261 bits (668), Expect = 1.790e-78
Identity = 128/173 (73.99%), Postives = 148/173 (85.55%), Query Frame = 2 
Query:    2 WVPP-MKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            ++PP MKGG  PYPGLFL +  AR+ RPVL   +GR E+IGPMEQ FM+IACL +D+R G+TTH+ELDP NMLSL+ASLTPFSDYNQSPRNMYQCQMGKQTMGTP H L P+R DNKMYK+  PQA +VQT  HGEY++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ER
Sbjct:  503 YIPPGMKGG--PYPGLFLFTIAARVVRPVLQRATGRTEYIGPMEQPFMDIACLPEDIREGITTHQELDPANMLSLIASLTPFSDYNQSPRNMYQCQMGKQTMGTPCHSL-PYRADNKMYKIQTPQAPLVQTAVHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYER 672
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A6U3PLE0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PLE0_9STRA)

HSP 1 Score: 262 bits (670), Expect = 3.370e-78
Identity = 126/172 (73.26%), Postives = 147/172 (85.47%), Query Frame = 2 
Query:    2 WVPPMKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            ++PP   G GPYPGL+L +  AR+ RPVLH  +G  E IGPMEQ F++IACL  D+R G+TTH+ELDPTNMLSL++SLTPFSDYNQSPRNMYQCQMGKQTMGTP H L PHRTDNK+Y++  PQA +VQT RHGEY++D+YP GTNAVVAV+SYTGFDMEDAMILNKSSFER
Sbjct:  687 FIPPGIVG-GPYPGLYLFTSAARLVRPVLHRSTGCAELIGPMEQPFLDIACLPQDIREGITTHQELDPTNMLSLISSLTPFSDYNQSPRNMYQCQMGKQTMGTPVHSL-PHRTDNKLYRLQNPQAPVVQTSRHGEYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSFER 856
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: W7TET2_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TET2_9STRA)

HSP 1 Score: 261 bits (666), Expect = 9.710e-78
Identity = 128/172 (74.42%), Postives = 149/172 (86.63%), Query Frame = 2 
Query:    2 WVPPMKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            ++ P++GG  P PGLFL SG ARM RPVLHL +G +E+IGPMEQ FME+A L +DVR G TTH+ELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTP     PHRTDNK+Y++L PQA IVQTRRH EY +D++PQGTNAVVAVISYTG+DMEDAMIL+K+S++R
Sbjct:  664 FIHPVRGG--PAPGLFLFSGAARMVRPVLHLETGCVEYIGPMEQVFMEVALLPEDVRAGETTHQELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPTTSY-PHRTDNKLYRILTPQAPIVQTRRHAEYGMDEFPQGTNAVVAVISYTGYDMEDAMILSKASYDR 832
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BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Match: A0A7S0CJA4_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CJA4_9STRA)

HSP 1 Score: 244 bits (624), Expect = 4.360e-76
Identity = 115/163 (70.55%), Postives = 136/163 (83.44%), Query Frame = 2 
Query:   29 GPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLADDVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFER 517
            GPYPGL+L +   R  RPVLH  +G++E IGPMEQ F+ IACL +DV  G+TTH ELDPTN+L L++ +TPFSDYNQSPRNMYQCQMGKQTMGTPAH L PHR DNK+Y++  PQA IVQT +H  Y++D+YP GTNAVVAV+SYTGFDMEDAMILNKSS+ER
Sbjct:   52 GPYPGLYLFTDAGRCTRPVLHRATGKVELIGPMEQPFLTIACLPEDVSEGITTHMELDPTNILDLISGMTPFSDYNQSPRNMYQCQMGKQTMGTPAHSL-PHRPDNKLYRLQNPQAPIVQTAKHSLYKMDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYER 213
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13972.2971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGZ7_ECTSI1.330e-11398.26DNA-directed RNA polymerase (Fragment) n=1 Tax=Ect... [more]
A0A7S2EG60_TRICV6.200e-8873.84DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A835YVF9_9STRA5.110e-8576.02DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7R9U7R0_9STRA1.100e-8376.16DNA-directed RNA polymerase n=1 Tax=Pinguiococcus ... [more]
A0A7S3V7B4_9STRA2.440e-8077.91DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
K0RK47_THAOC3.940e-7973.41DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
B8CA95_THAPS1.790e-7873.99DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A6U3PLE0_9STRA3.370e-7873.26DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
W7TET2_9STRA9.710e-7874.42DNA-directed RNA polymerase subunit beta n=2 Tax=M... [more]
A0A7S0CJA4_9STRA4.360e-7670.55DNA-directed RNA polymerase (Fragment) n=1 Tax=Pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13972contigL-elsbetiae_contig13972:1238..4708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.9
Seed ortholog evalue1.1e-92
Seed eggNOG ortholog2880.D8LGZ7
Preferred namePOLR1B
KEGG rclassRC02795
KEGG koko:K03002
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000428,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006352,GO:0006353,GO:0006360,GO:0006361,GO:0006363,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007000,GO:0007275,GO:0007565,GO:0007566,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009303,GO:0009553,GO:0009561,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016043,GO:0016070,GO:0016072,GO:0016740,GO:0016772,GO:0016779,GO:0017126,GO:0018130,GO:0019222,GO:0019438,GO:0022414,GO:0030880,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032535,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040029,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044706,GO:0045793,GO:0045815,GO:0046483,GO:0048229,GO:0048518,GO:0048856,GO:0050789,GO:0051704,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0216@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Exons5
Model size520
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13972.2971.1prot_L-elsbetiae_contig13972.2971.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13972 1238..4695 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.8727221-CDS-L-elsbetiae_contig13972:1237..13991622815549.8727221-CDS-L-elsbetiae_contig13972:1237..1399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 1238..1399 -
1691682953.5238554-CDS-L-elsbetiae_contig13972:1237..13991691682953.5238554-CDS-L-elsbetiae_contig13972:1237..1399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 1238..1399 -
1622815549.884574-CDS-L-elsbetiae_contig13972:2089..21671622815549.884574-CDS-L-elsbetiae_contig13972:2089..2167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 2090..2167 -
1691682953.5355628-CDS-L-elsbetiae_contig13972:2089..21671691682953.5355628-CDS-L-elsbetiae_contig13972:2089..2167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 2090..2167 -
1622815549.8950062-CDS-L-elsbetiae_contig13972:2506..26411622815549.8950062-CDS-L-elsbetiae_contig13972:2506..2641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 2507..2641 -
1691682953.5449536-CDS-L-elsbetiae_contig13972:2506..26411691682953.5449536-CDS-L-elsbetiae_contig13972:2506..2641Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 2507..2641 -
1622815549.9057481-CDS-L-elsbetiae_contig13972:4189..42651622815549.9057481-CDS-L-elsbetiae_contig13972:4189..4265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 4190..4265 -
1691682953.5550597-CDS-L-elsbetiae_contig13972:4189..42651691682953.5550597-CDS-L-elsbetiae_contig13972:4189..4265Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 4190..4265 -
1622815549.9162712-CDS-L-elsbetiae_contig13972:4639..46951622815549.9162712-CDS-L-elsbetiae_contig13972:4639..4695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 4640..4695 -
1691682953.5652547-CDS-L-elsbetiae_contig13972:4639..46951691682953.5652547-CDS-L-elsbetiae_contig13972:4639..4695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13972 4640..4695 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.9342747-UTR-L-elsbetiae_contig13972:4695..47081622815549.9342747-UTR-L-elsbetiae_contig13972:4695..4708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13972 4696..4708 -
1691682953.57495-UTR-L-elsbetiae_contig13972:4695..47081691682953.57495-UTR-L-elsbetiae_contig13972:4695..4708Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13972 4696..4708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13972.2971.1

>prot_L-elsbetiae_contig13972.2971.1 ID=prot_L-elsbetiae_contig13972.2971.1|Name=mRNA_L-elsbetiae_contig13972.2971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MKGGAGPYPGLFLNSGGARMCRPVLHLHSGRMEWIGPMEQQFMEIACLAD
DVRPGLTTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTP
AHCLTPHRTDNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISY
TGFDMEDAMILNKSSFER*
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mRNA from alignment at L-elsbetiae_contig13972:1238..4708-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13972.2971.1 ID=mRNA_L-elsbetiae_contig13972.2971.1|Name=mRNA_L-elsbetiae_contig13972.2971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3471bp|location=Sequence derived from alignment at L-elsbetiae_contig13972:1238..4708- (Laminarionema elsbetiae ELsaHSoW15)
GTGGGTGCCGCCGATGAAGGGAGGGGCGGGGCCGTACCCCGGCCTGTTTT
TGAACAGCGGGGGGGCACGGTGAGCGTCTTGTTGTTGTTTTTGTTGTTCT
CGGGAGAGAGGGGAGTGTGCGTTGTCTACTCGGTTCGGAGAGAGAGGGGG
AGAGAGGGAGAGCAGGGGGGCGGGGTAGAGTTGAGTGTGTCGGGGGGAGA
CGTGGCGCACGACAGTGTTTGATTTGCGTTGTTGTTCATATTCGTCTCGT
GTAAAAGTGGCGCCAGCGCGAGAGTGGCATCGTAAATATACCTACTCCAT
CTCTGGTCTATTTTTGTTTGTGTGCTCTCTCGCGTTGCTCGTCTTGTTGG
ATGCCAAACACCATTCTATTCCATTCTAATTCCATTATATTCCATTCTGC
ATATGTACAACATGCGTCATTCTTTGCCATCATTCTTTGCCAGGATGTGC
CGACCAGTGCTGCACCTCCATAGCGGTAGGATGGAGTGGATCGGGCCCAT
GGAGCAGCAGTTCATGGAGGTATGAATGTACAACAGTACCGTATATGGCA
CGACACAAGATAACACACCCCCTGGACCGATTTTCAAAGCCCAAGTGATG
TACCTACTCCGCCGCGAGAGGGTCCCGACAAGGGCGGCGTTGGAAAGGTC
TCATCAGGAGCTGTCCGAAAACGTGTCGTTTGGTTATCAGAAACATTTGC
GTTGCGGAGTAACCGAGCTTTGGAAGTCGGTCCAGGGGGTGTGTTATCTT
GCGTCGTATTATACGGTAGGTACCATAGGTATGGTGTTTTTTTTTGTGGG
TTTCTTGTTGTTTTCGTTTTCGCCATCAAGGGAGTGTATCGCCAGGACGC
CACCGAGGGTGTGGGCAGACCGGCCCCTTCGAGCGTATCATACCTATTTG
TGTACTTCGTATATCATCTCTGAGTTCCTCCCCGCGATGTGAAACAGTAT
CAAAGCCGGTTATCTCGACAACTGAAAGTATAAGTATATGTAGCATGTAC
ACGATTAAGTAAAGTGTTGAAACCTGGAAAGATATCGGCGAGATCCCCTC
CATGGGCCTCACTCGGCAAGTATATGTATGGCAACCAATCGCGTAGAAAA
TCGGCTTCGAAAAATATTTTCACCCAGGGGGGGGGGACTTGGAGAGAGAT
GATTACGGTTCATCACTACTACTGCTGTCACTACGATGTATCTTGCATGT
TTTACAAATGCAAAAAAAAACAGCGTAAGTTTCCCGTGTGATAGATAACC
TACGACGGGGTGGTTTTCCCCCAAATCAACGAGCCAGAGAGCGCTCTGGA
CACGAAGAAGATTAAAAACGTAAGCTATTTGGCAGCCGTTTTTCTTGTCC
TGCCGACGTCGTTACCCCCCACCCCCCTCCTTTTCGCGAGGATTATTAAG
CATACGATACACGGCACCCCCCCCCTTAGCGTCGATGGATCCATTCTAGC
CTCGGCCGGGGAGGCGTTCCTCCTGCTAACCTAACCTAACCTAACCTAAA
CCCCACCTACATAGCTTTTGCGCTCAAGATCAAGTTATCAGAGACAGCAG
CAACAGCTAGCTGGTCTGAAATCTAGGTGAAAATAACTTGTACGTTTTGC
CTCCGAGTTTCGGGTTCGGAAGATAAATCAGATAATCAAAAACAGAACCT
AGCGCACATTTTAAGACGAAACTCCGTGGGGGTTCAACCGGTTTTCCATG
TGGTGACGTCACAGACGTTACATTGGTCTGACCGAGAAGAAAAAATTCGA
AAATGTCAAAAAGACGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTAATTTTTNNNAAAGAAAAAAACTAACATAAATAAAAACGA
CCCGTAGAAAAAAAAAAATTGCGAATCTGTGAAATTGTTGTTTTTTTTTT
TTTTTTTTTCTCATCATTTTTTTGAAAGACTTTTTTTTTTTTTCTTCTCT
ATTGTCATTTTTTTGTCGTTGTTTTGTCTCTTTTTCTTTGTCTTTTCTTG
TTTGCGATGCGAGACAGATCGCCTGCCTCGCGGACGACGTGAGGCCCGGG
CTGACTACCCACCGGGAGCTGGACCCCACCAACATGTTGTCGTTGGTTGC
CTCTCTCACGCCCTTCTCGGACTACAACCAGAGCCCCAGGAATATGTACC
AGGTATGTCTGGCCGCGTGTGCATACCGGTAGTAAGTCTTGTCCTGTGCG
ATTTGTTGGGTTTTTGCTGTTGTTGTTGTTGTTGTTGCTGCTGCTGCTGC
TGCTGTTGCTGTTGTAGTTTATGGTTTGTTGTGGATTTTTTTTTTTTATT
GCTGTGTTGTTGTGGTTGTGGATTGTGGTTAGTGGTGGTGGTGTTAATTG
TTGTTGCTGTGGTGTTGTTGCTGCTGACAGTCCCGTTGACAGTCCCGTTG
TTGTTGGCCTTGCTGTCCTCTCTTGTTTGGCTGCTGAACACACGCCCTTC
CCGTCTCCCCTCCCCCCCCTTGCTTTGCTCTCTCCATCAAGTGCCAAATG
GGAAAGCAAACGATGGGCACCCCGGCGCACTGCCTCACACCACACCGCAC
GGACAACAAGATGTACAAGGCGAGTCGAGTCCATCCGCCCATGCTGCCAC
GCCCGCCCTCTCGTCGGTGGCGCTGTCACCGTAACTATCACTCACATTCG
AAAACATCAAATATCTCCAGGGTGTTAGGGTCACACTCGAAAGCATCAAA
TATCTCCAGTCCCTGTGGAGCGCAAGCGATGCAATCCCGAGCGCACCAAA
CAAGTTTGTTGAAAAATCAAATCACAAACTAAATCACGGAACCTACACAA
CACACATTTGAGACGGGACTCCGTGGGATTCAACCGGTATTTTTTCCAAC
ATGTGTTGTTGTTTTGGCGTCGAGCGAATGCCCTCTCCTGCGCCCGTGCC
GGCCTCTGTGAAAAGTATCTCGAGTCCTTTCAGAGAGAGGTGTGCGATGG
TACGATAAACGCTGCTCTCAAGAGTCACACCGGTGTATGTGGAGTCGCCG
CCGCCGCCGCCGATGATGTGGTGAACCTGTACATCTAGCCACGGGTAAAT
CAGACCCATTATTCGAGCACGGAAACACTCTCAACGCCGGAGCTTCGATC
TTTTCCTGGGTTCGTGAATATGTTTTGTGTAGGGCGTCGTCTCGAGACCC
ACTAAACTGTTGTCTCTTTTGTTGTCTGATGGCATCCCGCTCCCTTATTA
CATATATACTTCCCACCAAACTCTGACCGTCGCCCTTAACCACCACCCGC
TCCGATCAGGTGCTGTTCCCGCAAGCGGCGATCGTGCAGACAAGGCGACA
CGGGGAGTACCAGCTGGACGACTACCCTCAGGGGACCAACGCGGTGGTGG
CGGTGATCTCGTACACGGGGTTCGACATGGAAGACGCCATGATCCTCAAC
AAAAGCAGCTTCGAGCGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13972:1238..4708-

>mRNA_L-elsbetiae_contig13972.2971.1 ID=mRNA_L-elsbetiae_contig13972.2971.1|Name=mRNA_L-elsbetiae_contig13972.2971.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig13972:1238..4708- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGGAGGGGCGGGGCCGTACCCCGGCCTGTTTTTGAACAGCGGGGG
GGCACGATGAAGGGAGGGGCGGGGCCGTACCCCGGCCTGTTTTTGAACAG
CGGGGGGGCACGGATGTGCCGACCAGTGCTGCACCTCCATAGCGGTAGGA
TGGAGTGGATCGGGCCCATGGAGCAGCAGTTCATGGAGGATGTGCCGACC
AGTGCTGCACCTCCATAGCGGTAGGATGGAGTGGATCGGGCCCATGGAGC
AGCAGTTCATGGAGATCGCCTGCCTCGCGGACGACGTGAGGCCCGGGCTG
ACTACCCACCGGGAGCTGGACCCCACCAACATGTTGTCGTTGGTTGCCTC
TCTCACGCCCTTCTCGGACTACAACCAGAGCCCCAGGAATATGTACCAGA
TCGCCTGCCTCGCGGACGACGTGAGGCCCGGGCTGACTACCCACCGGGAG
CTGGACCCCACCAACATGTTGTCGTTGGTTGCCTCTCTCACGCCCTTCTC
GGACTACAACCAGAGCCCCAGGAATATGTACCAGTGCCAAATGGGAAAGC
AAACGATGGGCACCCCGGCGCACTGCCTCACACCACACCGCACGGACAAC
AAGATGTACAAGTGCCAAATGGGAAAGCAAACGATGGGCACCCCGGCGCA
CTGCCTCACACCACACCGCACGGACAACAAGATGTACAAGGTGCTGTTCC
CGCAAGCGGCGATCGTGCAGACAAGGCGACACGGGGAGTACCAGCTGGAC
GACTACCCTCAGGGGACCAACGCGGTGGTGGCGGTGATCTCGTACACGGG
GTTCGACATGGAAGACGCCATGATCCTCAACAAAAGCAGCTTCGAGCGGT
GAGTGCTGTTCCCGCAAGCGGCGATCGTGCAGACAAGGCGACACGGGGAG
TACCAGCTGGACGACTACCCTCAGGGGACCAACGCGGTGGTGGCGGTGAT
CTCGTACACGGGGTTCGACATGGAAGACGCCATGATCCTCAACAAAAGCA
GCTTCGAGCGGTGA
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