mRNA_L-elsbetiae_contig10254.298.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10254.298.1
Unique NamemRNA_L-elsbetiae_contig10254.298.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10254.298.1 vs. uniprot
Match: A0A6H5JH57_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH57_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 9.640e-9
Identity = 46/103 (44.66%), Postives = 56/103 (54.37%), Query Frame = 3 
Query:  234 FQPKAEGHMRNLTMSADDERRQMEEDNRLAPAMQKGEAADTVGARGLSAEAMIPAELVPEATS-SPPFSHVPMEDRNGGXXXXXXXXXXXXXGGWRASSGSKG 539
            FQP AE H+RN  ++AD ERRQMEED RLA AMQKGEAA   G  G       P +  P +++ S  FS +   +R+G                WR SSGSKG
Sbjct:   21 FQPDAENHLRNFAVTAD-ERRQMEEDYRLALAMQKGEAAAANGTGGRGVPVAAPVQAPPASSAGSSSFSRMLGNERDGNSGGAGGGGI------WRRSSGSKG 116
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10254.298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH57_9PHAE9.640e-944.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10254contigL-elsbetiae_contig10254:3674..5249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size539
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10254.298.1prot_L-elsbetiae_contig10254.298.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10254 3674..4992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815255.1850748-CDS-L-elsbetiae_contig10254:3673..38431622815255.1850748-CDS-L-elsbetiae_contig10254:3673..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 3674..3843 -
1691682799.017154-CDS-L-elsbetiae_contig10254:3673..38431691682799.017154-CDS-L-elsbetiae_contig10254:3673..3843Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 3674..3843 -
1622815255.1958535-CDS-L-elsbetiae_contig10254:4880..49921622815255.1958535-CDS-L-elsbetiae_contig10254:4880..4992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 4881..4992 -
1691682799.0277426-CDS-L-elsbetiae_contig10254:4880..49921691682799.0277426-CDS-L-elsbetiae_contig10254:4880..4992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10254 4881..4992 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815255.2115977-UTR-L-elsbetiae_contig10254:4992..52491622815255.2115977-UTR-L-elsbetiae_contig10254:4992..5249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10254 4993..5249 -
1691682799.0393794-UTR-L-elsbetiae_contig10254:4992..52491691682799.0393794-UTR-L-elsbetiae_contig10254:4992..5249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10254 4993..5249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10254.298.1

>prot_L-elsbetiae_contig10254.298.1 ID=prot_L-elsbetiae_contig10254.298.1|Name=mRNA_L-elsbetiae_contig10254.298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MRNLTMSADDERRQMEEDNRLAPAMQKGEAADTVGARGLSAEAMIPAELV
PEATSSPPFSHVPMEDRNGGNGGDSGGSGGSGSGGWRASSGSKG
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mRNA from alignment at L-elsbetiae_contig10254:3674..5249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10254.298.1 ID=mRNA_L-elsbetiae_contig10254.298.1|Name=mRNA_L-elsbetiae_contig10254.298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1576bp|location=Sequence derived from alignment at L-elsbetiae_contig10254:3674..5249- (Laminarionema elsbetiae ELsaHSoW15)
CTCTAGATACATACCGTTTGACGGAGTTGCTGGTGAGTTTCGCATTTCGG
ACGGCTACGTTTTTGTGCCGTGCTGGGCCACCACGATTGTGAACTTCTTA
CGTTGAGCGCTGCAGCAGAGGGCTAAACTGGTGCAACACCAAACTCATCA
TCATGTTGAACTTATGTTGAGTTGCGAGTTCAAGAGATCTGGTAGATGAT
CGCGCGACGGATTTTGTTTAAGCCTTCGACCTCTTCCAGCCGAAGGCGGA
GGGCCACATGAGAAACTTGACCATGTCGGCCGATGATGAGCGGAGGCAGA
TGGAGGAGGACAACCGCTTAGCGCCCGCGATGCAGAAGGGCGAGGCAGCT
GATACGGTTGGTGCCCGAGGTGAGATGCACTCGCTTGTCGACTTCGACGC
AGCCATCAGACCATGAGAGCTGGACCCTGTCCACTAGAGTAGCATACAAA
GCGGTATTGTATGCATAAATCAAGAAGCAAAGCAAGCCGTGGTGTATATC
ATGGCTGTTTGTTCTCGTCTCATGCAAGCTTGCAAGCGAGCTCCCCGGGC
CCGCTGCAAGTATACCTTGCCGGTCTTGGATACGCCGGCTTGCGTATGGC
GTGACATGAAACGGGCGCCTGCTTCTTTGGCCTGTGCCTTGCACCACCGC
ATTTTTCCCGCCATCGCCCAATGATAGCAGACTTTGTTTGTTTTTTGTCG
TGGTTCTCTTGACCGCAAGCTCAAAGGATACGGATCGGGGTCGGTTGGCT
CAACGCTATGTACTACTGTCGAAACACGCGTTGCCTGACTTGAGGACGGT
GGCAGCCGACTGACCGGATCGGACTATTTGTGTCACGCTCCGATCTGTGT
GTGTGTGTGTGTGTGTGTGTTTGTGGGAGTGCGGTTTCATAATTATGTAG
CATCGGCCGCGCTAAATAATCAGTTGACCAATGAGAGGACGCCACCGTTT
TGCGGGCAATAAACATAACATCGATGTCCTACATGACGAACGCCCTTGAT
GCAGGTCCCGAAAGTATGTCATAGTTTGTTTGCCCTCATCCTTTTTTTGT
TGGGCACGCTTGTCAACCGTATCTCTGCTGTCGTCTCTTAGCTTTCTTGT
TTCTATTTTTGTTTTACAAACATTCCTAGAATTTTCTTCATTTACAGGTT
CCCCTCCTGTTCCTCCTGTTCCTCCGCCTCCCCCTTTATCATCTCTACCA
TGACTGGTGCCACCACTACCTGCGCTAATACCCGTTTCACCGGTACCACC
GTACCATATCCTCCTGTGTATGTGTGTGTGTGTGTGTTCGTCCTGAGTTT
CGGCAGCAAGAAGCCGAGCAGGAAAAAATCGTGAAAACAAGGCGCTCACA
GACCAACCTCTGGTTTCCTACCTCGCCCGTCTACGCTTTTATCACTCTTT
GCCAAGGGTTATCGGCGGAGGCCATGATTCCAGCGGAGCTTGTGCCAGAG
GCTACGTCTTCTCCGCCTTTTTCGCACGTGCCGATGGAGGATAGGAACGG
CGGTAACGGCGGTGACAGCGGCGGCAGCGGCGGCAGCGGCAGCGGCGGCT
GGCGAGCGAGTAGTGGTAGCAAGGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10254:3674..5249-

>mRNA_L-elsbetiae_contig10254.298.1 ID=mRNA_L-elsbetiae_contig10254.298.1|Name=mRNA_L-elsbetiae_contig10254.298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig10254:3674..5249- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAAACTTGACCATGTCGGCCGATGATGAGCGGAGGCAGATGGAGGA
GGACAACCGCTTAGCGCCCGCGATGCAGAAGGGCGAGGCAGCTGATACGG
TTGGTGCCCGAGATGAGAAACTTGACCATGTCGGCCGATGATGAGCGGAG
GCAGATGGAGGAGGACAACCGCTTAGCGCCCGCGATGCAGAAGGGCGAGG
CAGCTGATACGGTTGGTGCCCGAGGGTTATCGGCGGAGGCCATGATTCCA
GCGGAGCTTGTGCCAGAGGCTACGTCTTCTCCGCCTTTTTCGCACGTGCC
GATGGAGGATAGGAACGGCGGTAACGGCGGTGACAGCGGCGGCAGCGGCG
GCAGCGGCAGCGGCGGCTGGCGAGCGAGTAGTGGTAGCAAGGGTGGTTAT
CGGCGGAGGCCATGATTCCAGCGGAGCTTGTGCCAGAGGCTACGTCTTCT
CCGCCTTTTTCGCACGTGCCGATGGAGGATAGGAACGGCGGTAACGGCGG
TGACAGCGGCGGCAGCGGCGGCAGCGGCAGCGGCGGCTGGCGAGCGAGTA
GTGGTAGCAAGGGT
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