mRNA_L-elsbetiae_contig1397.2968.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1397.2968.1
Unique NamemRNA_L-elsbetiae_contig1397.2968.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1397.2968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1397contigL-elsbetiae_contig1397:10243..12432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.5660615-CDS-L-elsbetiae_contig1397:10243..104581622815549.5660615-CDS-L-elsbetiae_contig1397:10243..10458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1397 10244..10458 -
1691682953.350366-CDS-L-elsbetiae_contig1397:10243..104581691682953.350366-CDS-L-elsbetiae_contig1397:10243..10458Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1397 10244..10458 -
1622815549.576476-CDS-L-elsbetiae_contig1397:12335..124321622815549.576476-CDS-L-elsbetiae_contig1397:12335..12432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1397 12336..12432 -
1691682953.3599539-CDS-L-elsbetiae_contig1397:12335..124321691682953.3599539-CDS-L-elsbetiae_contig1397:12335..12432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1397 12336..12432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1397.2968.1prot_L-elsbetiae_contig1397.2968.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1397 10244..12432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1397.2968.1

>prot_L-elsbetiae_contig1397.2968.1 ID=prot_L-elsbetiae_contig1397.2968.1|Name=mRNA_L-elsbetiae_contig1397.2968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
AGLCGLHAAGAAAVGGAFRGTGGRWRSSGGCRDGQRGRAGGGRAQGVRAG
NHGDGVRRDEGVLSSVKRETMYLHTKPVGQTDRQTDRQAYIRSENYRSEG
TQDT
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mRNA from alignment at L-elsbetiae_contig1397:10243..12432-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1397.2968.1 ID=mRNA_L-elsbetiae_contig1397.2968.1|Name=mRNA_L-elsbetiae_contig1397.2968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2190bp|location=Sequence derived from alignment at L-elsbetiae_contig1397:10243..12432- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGACTTTGCGGGTTACACGCCGCAGGAGCAGCAGCTGTGGGCGGCGC
TTTCCGAGGGACCGGAGGTCGGTGGCGCTCATCAGGAGGATGTCGAGGTG
GGTGGCTGGGGCCGTGCGGGCCGCGGCGGCAGCTTGTATGTAAGGTCGAG
CTTTTTTTGCCAAGAACACGTTGAGGCGTTCTGGTTCGACCGACACGACA
CTCTTTTTAGGCGTGTAGAGGGGCTCCGTATCGCGTTTTTTTCGCAAATT
TTGCTCACAGAGATCGAAATTGCGAAGGCCCCGCTTGGCCCCTTAGTCAC
AATAGGTCTAGGGAAGCATTTAGTTGCGATCCGAAGCTCGTCCCAGCTTC
CTGAAGAATCTGTTTGGACACCCCTACAATACAGGCTGGTGGTACCATCA
AAATATATTTTCCAGGCACGTTTTCGGAGGGCTACGCAGCAGAGTAGCAG
TGGTAAAGCTTCAACTTTCGGAGACGGTTGACGTTTGTTGTTTCAAACAA
AATTGGAGGTAGCTTTCCCGTTCTGTGTGAGCGAGGCCCTCAGAGAGATG
GTTGCTGTCATGACCGTCGTGCCCCTGGGATCCAAAATTATTTCAAGCGT
GCATCCAACCTATACAAACGTAATTTGTATGTATGTGTCTCCACTGCTGT
TGTGCCGAAGCACCGAGCGATTTCGTCAACTTCTTTGATGGGCTACAGCC
GCGTGGAAGTTTTGCTGCTGGCGGTCGAAAATTCGCCTAAAAGCAGCAAC
AAAGGCTCGCCTCTTCCAAGTTGCGACGACCCAGCATTCCCTCGAGCTCA
GGGCGAAAGGAAAGCATAAAAACTGCTGAGTTGTACCTGCGGACGTGTGT
GTACAGAAAAAGTTGTACTTTGTATAATACATAAGATGGGACATATCTGG
GGTCGCCTGTAAGTTTTATAAGCCAGCCGTGACCTGTGTGAGGAGCATCG
TTGTGCTGAAAGTTGGCGTCAGCAGCGAAAAAAAATCGCGTTGCGGGCGG
AGAAGGAATTTCCCGCTCTGTGTGGAACCTGTGAGCGTATGTTAATGCCC
GGAGCCCCCTGCACCTCCCGCGGGGTGGTCGCAGGGGATTTTTTTTCCAA
ATATACGCGTTTGCCTTGGGCGAATGACATTCGTCGGGGGCAGGCAGGGC
GAGGAGTTTTGTTCACGTTCTCTCTATTTTTGTTTTTTACTAAGACAGAT
ACGATAACATGCTTCCTTTGCCGTAGCCTCCTCTGTTATGGTTTATTTTT
CAGGCTGCGGGAAGCAGACAGGTCCACGTCTGTCTTCGTTTGTGTTGCTT
CCCCGACACATTTGGCGCCTTGGCCTTGCTCTTTTAAAAATAAACAATGA
ATCAAAGATGAACCTACCCCACACTAGAGCAAGGACTCGATATGGGGTTC
AAACGGTATTCCATACAGAGACGTAATATTTTGCGAAGCGAGCAGAAAAA
CAACCTAAATATCAGAAGAGTTCAACATCTCCCCTGCAAAGATTTAAGAT
TTGCGAGGTCGGCCAACAATTATTCAGGCGGGTAGAGCCCGTCATGATGC
CGTAATGTTGTCATCTACTTCAAAATAGAAACACATCGCATTCTTTTGTC
GCCGCTTTTTCTTCCTCTCCTCTGTCCCATTTGCTTCCGTGGCTGTGGCT
GTGGTCTAATTAATGGCATCAATGCCCAACAGACTCAAAATGTTAACCCG
CAAATGTGCGTCCGCCACCATCGTCCCTCGCCCGTCTGGCCTTGCCCCCC
CCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCTCTCCTCCCCCCCCCCCCC
CCCCCCCCGCCCCCCCCCCCCCCCCCCCCCCCTCTTTTTCCCCCCCCCCG
GCCCCCCCCCCCCCCCCCCCCCTTTTATATTTATTTAACGTTCCGCGCGT
GGAAACGACCTACAAAAATCGGTTTTGTTGCCCTGTCCCCGTGGATCGGT
CGGACATGGACATGGGGAACGCAGATGGGCAACGCGGGAGGGCAGGAGGA
GGCAGAGCTCAAGGTGTTCGCGCAGGAAATCATGGGGATGGTGTTCGACG
AGACGAAGGCGTGCTGAGTAGCGTGAAGCGGGAAACCATGTATCTACACA
CAAAACCGGTGGGACAGACAGACAGACAAACAGACAGACAGGCGTATATT
AGGAGCGAAAACTACCGTTCGGAGGGGACACAAGATACTA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1397:10243..12432-

>mRNA_L-elsbetiae_contig1397.2968.1 ID=mRNA_L-elsbetiae_contig1397.2968.1|Name=mRNA_L-elsbetiae_contig1397.2968.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig1397:10243..12432- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGACTTTGCGGGTTACACGCCGCAGGAGCAGCAGCTGTGGGCGGCGC
TTTCCGAGGGACCGGAGGTCGGTGGCGCTCATCAGGAGGATGTCGAGGCC
GGACTTTGCGGGTTACACGCCGCAGGAGCAGCAGCTGTGGGCGGCGCTTT
CCGAGGGACCGGAGGTCGGTGGCGCTCATCAGGAGGATGTCGAGATGGGC
AACGCGGGAGGGCAGGAGGAGGCAGAGCTCAAGGTGTTCGCGCAGGAAAT
CATGGGGATGGTGTTCGACGAGACGAAGGCGTGCTGAGTAGCGTGAAGCG
GGAAACCATGTATCTACACACAAAACCGGTGGGACAGACAGACAGACAAA
CAGACAGACAGGCGTATATTAGGAGCGAAAACTACCGTTCGGAGGGGACA
CAAGATACTATGGGCAACGCGGGAGGGCAGGAGGAGGCAGAGCTCAAGGT
GTTCGCGCAGGAAATCATGGGGATGGTGTTCGACGAGACGAAGGCGTGCT
GAGTAGCGTGAAGCGGGAAACCATGTATCTACACACAAAACCGGTGGGAC
AGACAGACAGACAAACAGACAGACAGGCGTATATTAGGAGCGAAAACTAC
CGTTCGGAGGGGACACAAGATACT
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