prot_L-elsbetiae_contig10253.296.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig10253.296.1
Unique Name	prot_L-elsbetiae_contig10253.296.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	378

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig10253.296.1 vs. uniprot
Match: D8LKM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM2_ECTSI)

HSP 1 Score: 404 bits (1037), Expect = 1.410e-128
Identity = 266/372 (71.51%), Postives = 279/372 (75.00%), Query Frame = 0

Query:    7 QAQALEAMVSQSGGGXXXXPAAGSNMPPTVNPPGLDEAANNLTLAMAAKRRKGSRATALTLSPTRGSPVRLPGRTPPPHGGKSTSSTPNKNKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTPSQGXXXXXXXEGEEDWVDVEEYDDDDIDAGSRCCCPCWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFVIMLGVAGGWIKRGYATAVVGVSFASVCSHWLISIEHPTSTMEAVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLALVREAMKIFVRSSILLMVLMYLAFECIGCLNSRPEADCAALLYANTEV 378
            +A+ALEAMV Q+GGG     AA  NMPPT N PGLDEAANNL LAMAA+RRKGSRA  LT SP++GSP RL GR P         STPN  +              XXXXXXXXXXXXXXXXXXXXXXX                   STP++ XXXXXXX                          CWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYF++MLGVA G IKRGYATAVVGVSFA VCSHWLISIEHPTSTME VHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHL LVREAMKIFVRSS+LLMVLMYLAFECIGCLNSRPEADCAALLYANT+V
Sbjct:  547 RAKALEAMVIQNGGGTDS--AATPNMPPTANAPGLDEAANNLALAMAAERRKGSRA-GLTSSPSKGSPPRLSGRKP---------STPNGGRX-------------XXXXXXXXXXXXXXXXXXXXXXXETNGSTALAGNEGAEMMRVSTPTRDXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXACWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFIVMLGVAAGGIKRGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIFVRSSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQV 890

[Close]

BLAST of mRNA_L-elsbetiae_contig10253.296.1 vs. uniprot
Match: A0A6H5K6P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P5_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 2.560e-94
Identity = 226/372 (60.75%), Postives = 240/372 (64.52%), Query Frame = 0

Query:    7 QAQALEAMVSQSGGGXXXXPAAGSNMPPTVNPPGLDEAANNLTLAMAAKRRKGSRATALTLSPTRGSPVRLPGRTPPPHGGKSTSSTPNKNKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTPS-QGXXXXXXXEGEEDWVDVEEYDDDDIDAGSRCCCPCWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFVIMLGVAGGWIKRGYATAVVGVSFASVCSHWLISIEHPTSTMEAVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLALVREAMKIFVRSSILLMVLMYLAFECIGCLNSRPEADCAALLYANTE 377
            +A+ALE MVSQ+GGG     AA  NMP T N PGLDEAANNL LAMAA+RRKGSRA  LT SP++GSP RL GR          SSTPN                  XXXXXXXXXXXXXXXXXX                       STP+ +GXXXXXXX   EDWV V+  D DD                   D+ +                                RGYATAVVGVSFA VCSHWLISIEHPTSTME VHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHL LVREAMKIF+ SS+LLMVLMYLAFECIGCLNSRPEADCAALLYANT+
Sbjct:  328 RAKALEVMVSQNGGGGGS--AATPNMPSTANAPGLDEAANNLALAMAAERRKGSRA-GLTNSPSKGSPPRLSGR---------KSSTPNGGPR-------------QXXXXXXXXXXXXXXXXXXTAATETNGSTPLAGNEGAEMMRVSTPTREGXXXXXXXXXXEDWVAVDGEDGDD-------------------DKEDD------------------------------SRGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIFLWSSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQ 625

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig10253.296.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig10253.296.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LKM2_ECTSI	1.410e-128	71.51	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K6P5_9PHAE	2.560e-94	60.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 260..270
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 291..295
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 355..378
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 235..239
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..212
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 338..354
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 271..290
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 240..259
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 213..234
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 318..337
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 296..317
None	No IPR available	TMHMM	TMhelix		coord: 214..236
None	No IPR available	TMHMM	TMhelix		coord: 338..360
None	No IPR available	TMHMM	TMhelix		coord: 240..259
None	No IPR available	TMHMM	TMhelix		coord: 271..290
None	No IPR available	TMHMM	TMhelix		coord: 295..317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig10253	contig	L-elsbetiae_contig10253:345..6317 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig10253.296.1	mRNA_L-elsbetiae_contig10253.296.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig10253 345..6317 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig10253.296.1 ID=prot_L-elsbetiae_contig10253.296.1|Name=mRNA_L-elsbetiae_contig10253.296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=378bp
MSIVAQQAQALEAMVSQSGGGGAGGPAAGSNMPPTVNPPGLDEAANNLTL
AMAAKRRKGSRATALTLSPTRGSPVRLPGRTPPPHGGKSTSSTPNKNKAG
DGETAASPTSTTLPTSGFGGPGNGNGAGNGAAAGGGGGSGGGSGTGAEAT
MVRVSTPSQGGEGGVGVEGEEDWVDVEEYDDDDIDAGSRCCCPCWDSFAF
WMDQRNTQNNLPVFRLLYFSSTVVYFVIMLGVAGGWIKRGYATAVVGVSF
ASVCSHWLISIEHPTSTMEAVHLLLHACTEAISVLLWVSVRDWTQAVYTL
SAFFAVYPCLFYGIQALKLGLHRKFSDHLALVREAMKIFVRSSILLMVLM
YLAFECIGCLNSRPEADCAALLYANTEV