mRNA_L-elsbetiae_contig1396.2964.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1396.2964.1
Unique NamemRNA_L-elsbetiae_contig1396.2964.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1396.2964.1 vs. uniprot
Match: D7G5J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5J5_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.510e-41
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = 1 
Query:  169 GSSAAICSLSSPDNDIEAMKGEMVGA-KKKKRRGKRGVRKGKKQMEGFAGFPLAPGLGPEFAGQPRRRLPKAPSLEIMRGEHDLSEYCLQDEGSS 450
            G  AAI +LSS DN+ E + GE VGA KKKKRRGKRGVRKGKKQMEGFAGFPLAPGLGPEFAGQPRRRLPKAPSLEIMRGEHDLSEYCLQDE  S
Sbjct:   30 GPMAAIGTLSSTDNESEMVSGEGVGAVKKKKRRGKRGVRKGKKQMEGFAGFPLAPGLGPEFAGQPRRRLPKAPSLEIMRGEHDLSEYCLQDESGS 124
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BLAST of mRNA_L-elsbetiae_contig1396.2964.1 vs. uniprot
Match: A0A6H5JUZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ5_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 5.670e-39
Identity = 79/96 (82.29%), Postives = 82/96 (85.42%), Query Frame = 1 
Query:  163 VPGSSAAICSLSSPDNDIEAMKGEMVGAKKKKRRGKRGVRKGKKQMEGFAGFPLAPGLGPEFAGQPRRRLPKAPSLEIMRGEHDLSEYCLQDEGSS 450
            V G  AA  +LSS DN+ E + GE V  KKKKRRGKRGVRKGKKQMEGFAGFPLAPGLGPEFAGQPRRRLPKAPSLEIMRGEHDLSEYCLQDE  S
Sbjct:   28 VAGPLAANGTLSSTDNESEMVSGEEVAVKKKKRRGKRGVRKGKKQMEGFAGFPLAPGLGPEFAGQPRRRLPKAPSLEIMRGEHDLSEYCLQDESGS 123
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1396.2964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5J5_ECTSI1.510e-4185.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUZ5_9PHAE5.670e-3982.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1396contigL-elsbetiae_contig1396:6105..9661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size462
Cds size462
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1396.2964.1prot_L-elsbetiae_contig1396.2964.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1396 6105..9661 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.281955-CDS-L-elsbetiae_contig1396:6104..62091622815549.281955-CDS-L-elsbetiae_contig1396:6104..6209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 6105..6209 -
1691682953.1964116-CDS-L-elsbetiae_contig1396:6104..62091691682953.1964116-CDS-L-elsbetiae_contig1396:6104..6209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 6105..6209 -
1622815549.2990901-CDS-L-elsbetiae_contig1396:6940..70001622815549.2990901-CDS-L-elsbetiae_contig1396:6940..7000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 6941..7000 -
1691682953.204598-CDS-L-elsbetiae_contig1396:6940..70001691682953.204598-CDS-L-elsbetiae_contig1396:6940..7000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 6941..7000 -
1622815549.3162906-CDS-L-elsbetiae_contig1396:7864..79421622815549.3162906-CDS-L-elsbetiae_contig1396:7864..7942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 7865..7942 -
1691682953.2151463-CDS-L-elsbetiae_contig1396:7864..79421691682953.2151463-CDS-L-elsbetiae_contig1396:7864..7942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 7865..7942 -
1622815549.331144-CDS-L-elsbetiae_contig1396:8748..88321622815549.331144-CDS-L-elsbetiae_contig1396:8748..8832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 8749..8832 -
1691682953.2230344-CDS-L-elsbetiae_contig1396:8748..88321691682953.2230344-CDS-L-elsbetiae_contig1396:8748..8832Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 8749..8832 -
1622815549.346098-CDS-L-elsbetiae_contig1396:9526..96611622815549.346098-CDS-L-elsbetiae_contig1396:9526..9661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 9527..9661 -
1691682953.231003-CDS-L-elsbetiae_contig1396:9526..96611691682953.231003-CDS-L-elsbetiae_contig1396:9526..9661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1396 9527..9661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1396.2964.1

>prot_L-elsbetiae_contig1396.2964.1 ID=prot_L-elsbetiae_contig1396.2964.1|Name=mRNA_L-elsbetiae_contig1396.2964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
GGCGDPQREAFQCSAGPPKGYVVAATAAETEPSPRPGSFLPLSIEVGGDA
VSTLVPGSSAAICSLSSPDNDIEAMKGEMVGAKKKKRRGKRGVRKGKKQM
EGFAGFPLAPGLGPEFAGQPRRRLPKAPSLEIMRGEHDLSEYCLQDEGSS
SQAD
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mRNA from alignment at L-elsbetiae_contig1396:6105..9661-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1396.2964.1 ID=mRNA_L-elsbetiae_contig1396.2964.1|Name=mRNA_L-elsbetiae_contig1396.2964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3557bp|location=Sequence derived from alignment at L-elsbetiae_contig1396:6105..9661- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCTGCGGGGACCCACAGAGGGAAGCGTTCCAGTGTAGTGCGGGCCC
TCCCAAAGGGTACGTTGTGGCTGCTACCGCTGCCGAGACCGAGCCGTCTC
CTCGCCCAGGGTCCTTCTTGCCCCTGTCAATTGAGGTAAATAAGGAGATA
ACACTGAGGTATTCCTACAAGTTCACGTCGTTAACTGCCGGGCCAACACA
CTTACACCTTGATGGGGGCCGAAAAACACTGCGGTGACCCAACGATGCTT
GTCAAAACAGAAAAGAGACCGCGTTGGCTGCCGTTGAGAACACACATACA
TACATTAGTGGGCAAGGTGTCTGGCTGACACTACGTAACAGTCCGAAATA
TGTATCGTGAAGGGGAGGGCACCAGTTTCTTGCTCCTCGTGTATCGGGGG
AAACCGAACAAGGGTGTTCATAGATGAAGGGTAGCAACGAGTTGCCAAGC
TTTTGTTTTGGAAGGATTTTTGCGATTGCCACGTACTAACTGTAAGGCAC
TTCATAGTCATTATCTCGGGCGCGTCGCGTTCTTTTTTCGACTTGCCATC
AACCAACAACGCGCGCGCGTCTGTAGTATACCAACATCCCAGCAACAGCA
GCAGTAACAGGTTAGTGTGCATACGCAATACACTTGACTACCTTACAATT
ATGGCAAACGTGTACCCGTGCTCTACAAACGCACGAAATCGGACAGAGTG
TGCACCCTGAATGCACCGCACGCGGAGACGAACCACCTGCTGTGTATTCA
TTTCCGCTATGGTGTTTAATGGCGATGAAAATGACTAATACCGCTGTTTT
GGTTGATAAAAACGGTTTAACCGGGGCAGGTCGGGGGCGACGCCGTCTCG
ACGCTCGTACCAGGTTCCTCCGCGGCGATTTGTTCCCTTTCCTCTCCGGA
CAACGACATTGAGGTTGGTTCAGACGACACTTGTTCTTTGTTCGTCGCAT
TTATTTCCAGCTCTCAAAGGGCTCCTTGCCACGAGGGGGAATCTTGCCTG
AGATCTGAACCGTGGTCGCACAGAAGGGTTCTCTCCTTGGAGGCTCCGCT
CCCGCCCCCCTCTGCGGTGCTTGTCTTTAACTTTAATGTTTAACGCGTTT
CACCGGTCTCTCCCCTGGCTGGGCTGGGTTAAGAGACGGGAATAGTGCGT
CGATGCGTCGGGCTTGGTGGCCAAACCCTGCGCTACGGTCGAAAACCATG
CGATCTGATGAGATGCCCTTAAATGAGATTTTTTTCAAGGGGGCGGTAGG
AGCGGGTAGATAAATAGCGGAATACTTAGTGCCCTTGGGGTTTCGTCGGG
GAAACCCCGTGACTAGCCGGCGGGCAAAATATGTTAAAACATGGGGGACG
AGGACTGAAAGCACCTTTTGGTGCAGGTTGCTTGCGTTTATGTACATCGC
GGCATCAGAGTAGAATGGGTCCCAGTGGCAAAACCTTTGAAACAGTAGTT
GCAGCCGTGCGTGCGCGCAGATAGTAAAAGTCACGGTGCGGTGGGTGTGG
AAGACTTCGCCCGCGTTTCCCAGCCAACGGTGTGGCATTGATTACATATA
TATATATATATAGAAGTTTTTATAGAAGTATAGACTGTACTTCATGGTAT
AATATGATCCCGTTCGTCCACCCACCTCTATTGCTCCGTTTTCCCCGGCC
TAACATCGACTTGGGGTTGCCGCGCACGTTGGTTCTGCTGGGGGGGGACG
AAATCTGTGTCGGGGTTAGGCGATGAAGGGAGAGATGGTCGGCGCGAAGA
AGAAAAAGAGGAGGGGGAAGCGAGGGGTCCGGAAGGGCAAGAAGCAGGTG
TGTACCTACATACATGCTCGCGGACGAGGTGCATTTTCTGTCTCCGTCCT
TGGCTATTGTTCGTTCGTGCGTGACCTCCTAGCGGGCACCTAAATTTCCC
CTACTACTGTAGAGTGAGGGTCGGTTTCCGATATTTCCAGACACAGTTTT
GTCATAGATGAACCAGAGAGCACTGCCCGCGGTAGAAGACGGGATGTAGC
ACAGAACCAATATTCAGAACCCATGTACACACCCGGGTGCAGAACGTCGA
GCGGAAAGGACTCAAAGTTGGCGAAAGCCGCCTCCATATATGTATATAGA
CGCTGAGCCTCAAAAGCCGTAGTTCGTTTTAGGTAGATACGGGTAGCGCC
ACCGCCGAGGACGGACAAACAATGCCATGGTGGTAAAACATAGCAGGTGT
AAGCAGTGAGAAAACCTAGATCATGAACAAAAAGGTGCTTGTGAAAAGCT
GGTATGAGTGTAGCTGGCCAACATCTTTTGTGTGCACTACGGCGCCCTAC
TCTGTGCTTGTCTGCAACAATTACATATGACGGCGAGCTTTTTCTGTTCA
GATCAACTCTGTGTTGATTGGAAACGGTTACCTGCCGCCGAGCGTGGTGT
GCGTGACCGCCACAGCTGTAGCGAGAACAAAAGCTTCCTCTGGAAATTCC
GTTTGAGGATTATGCATCGCTACGCCATCCCTTGGCGATGATCAAGGGGG
GCAAACGTGAGCGTAGAAACCGACTCAAGAGGGTGCTCCTTGCGGTCACC
AAATTGTATGCCCTGATCTCGCTTGCTTCTGTTCGTCATCCCACGCTCAG
CGCTTCACGTAAGTACCGGCTTATCACGCTTGCTTGCAATTGCCGTCTTC
TTGTCGCGCAGATGGAAGGGTTTGCCGGATTCCCCCTCGCGCCTGGTCTT
GGGCCGGAGTTTGCTGGACAGGTGAAAAGTAGGGGGGGAAGTGCTGTGGT
GGCTTCTGAGTAGACCGTCCTCAAGTTGGGGGGGGCACCGGGTGGATGCG
CAGATCTGTTCGCGTAACGATTGCCGCAAGTTCGGAAAATCGGGTGGTGG
TGCCGTGGTTTACAACCTCGAGTTCGAACGAAGTGCCGGTCGTTCTGATT
GAAAACACGATAAAGCTGGTCCTTTTGAGATTGGTGCGGACTGCCTGGCT
ATGAACATCGCTCGCCGAGGCAGCCCACCCCAATTCGGCAGTAGCTCGTG
CGCTGTTAAAACCATTTTTCCGTAAGGCCGGCAAACACCACCGTAGCCAG
ACCTTACATTTCCAATATCAACGCGGTGAGCTTCTTGCCTCTTGAAGAAA
GCGCATGCACTGGCCGATTCCACCGCTTCTCGGCATAAATGACCCCCATT
GTGCTGGGATTCTCAAAATGAGTCATCGACCCGTTGCTCACCAATCAATC
GTCGCCAATCCTTAACGATTCGATTTTTCCTCACAGTAGTAGTAGTAGGG
GGGAGCGGGGGGCTTGGAGAAAGAAACTCTTCTGTGTGACCACGGTCTCT
GGCAAGATGCCCTCGTGACAAGGACCCCATCGAGCACTGGAAATAAATGT
GAAAAACAAAAAAAGCAGTATCTGGTCTGCGCGTAAATTGTAAACCCTCC
CCCAACCGTCTTGCCGCCGCCGCCGCCCCATCGCCAACGCCGGATACAAC
AGCCGCGCAGACGGCTCCCCAAGGCGCCATCGCTGGAGATCATGCGCGGC
GAGCACGACTTGTCCGAGTACTGTCTCCAAGACGAAGGAAGCAGCAGCCA
AGCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1396:6105..9661-

>mRNA_L-elsbetiae_contig1396.2964.1 ID=mRNA_L-elsbetiae_contig1396.2964.1|Name=mRNA_L-elsbetiae_contig1396.2964.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig1396:6105..9661- (Laminarionema elsbetiae ELsaHSoW15)
GGAGGCTGCGGGGACCCACAGAGGGAAGCGTTCCAGTGTAGTGCGGGCCC
TCCCAAAGGGTACGTTGTGGCTGCTACCGCTGCCGAGACCGAGCCGTCTC
CTCGCCCAGGGTCCTTCTTGCCCCTGTCAATTGAGGGAGGCTGCGGGGAC
CCACAGAGGGAAGCGTTCCAGTGTAGTGCGGGCCCTCCCAAAGGGTACGT
TGTGGCTGCTACCGCTGCCGAGACCGAGCCGTCTCCTCGCCCAGGGTCCT
TCTTGCCCCTGTCAATTGAGGTCGGGGGCGACGCCGTCTCGACGCTCGTA
CCAGGTTCCTCCGCGGCGATTTGTTCCCTTTCCTCTCCGGACAACGACAT
TGAGGTCGGGGGCGACGCCGTCTCGACGCTCGTACCAGGTTCCTCCGCGG
CGATTTGTTCCCTTTCCTCTCCGGACAACGACATTGAGGCGATGAAGGGA
GAGATGGTCGGCGCGAAGAAGAAAAAGAGGAGGGGGAAGCGAGGGGTCCG
GAAGGGCAAGAAGCAGGCGATGAAGGGAGAGATGGTCGGCGCGAAGAAGA
AAAAGAGGAGGGGGAAGCGAGGGGTCCGGAAGGGCAAGAAGCAGATGGAA
GGGTTTGCCGGATTCCCCCTCGCGCCTGGTCTTGGGCCGGAGTTTGCTGG
ACAGATGGAAGGGTTTGCCGGATTCCCCCTCGCGCCTGGTCTTGGGCCGG
AGTTTGCTGGACAGCCGCGCAGACGGCTCCCCAAGGCGCCATCGCTGGAG
ATCATGCGCGGCGAGCACGACTTGTCCGAGTACTGTCTCCAAGACGAAGG
AAGCAGCAGCCAAGCCGACCCGCGCAGACGGCTCCCCAAGGCGCCATCGC
TGGAGATCATGCGCGGCGAGCACGACTTGTCCGAGTACTGTCTCCAAGAC
GAAGGAAGCAGCAGCCAAGCCGAC
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