mRNA_L-elsbetiae_contig13951.2961.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13951.2961.1
Unique NamemRNA_L-elsbetiae_contig13951.2961.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13951.2961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13951contigL-elsbetiae_contig13951:3600..4299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size700
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13951.2961.1prot_L-elsbetiae_contig13951.2961.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13951 3606..4001 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.0547469-UTR-L-elsbetiae_contig13951:3599..36051622815549.0547469-UTR-L-elsbetiae_contig13951:3599..3605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13951 3600..3605 +
1691682953.1112223-UTR-L-elsbetiae_contig13951:3599..36051691682953.1112223-UTR-L-elsbetiae_contig13951:3599..3605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13951 3600..3605 +
1622815549.081879-UTR-L-elsbetiae_contig13951:4001..42991622815549.081879-UTR-L-elsbetiae_contig13951:4001..4299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13951 4002..4299 +
1691682953.1304343-UTR-L-elsbetiae_contig13951:4001..42991691682953.1304343-UTR-L-elsbetiae_contig13951:4001..4299Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13951 4002..4299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815549.068637-CDS-L-elsbetiae_contig13951:3605..40011622815549.068637-CDS-L-elsbetiae_contig13951:3605..4001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13951 3606..4001 +
1691682953.1227186-CDS-L-elsbetiae_contig13951:3605..40011691682953.1227186-CDS-L-elsbetiae_contig13951:3605..4001Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13951 3606..4001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13951.2961.1

>prot_L-elsbetiae_contig13951.2961.1 ID=prot_L-elsbetiae_contig13951.2961.1|Name=mRNA_L-elsbetiae_contig13951.2961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
MNKRRLYQNSNRRKRRTQTDERGDRRRRFATHTQIRHTHREREKYTESER
HKPDEVSSGGLCQRVNDPMNVYSSPRDDRRLEYSRFARNAGTHTRTEGTM
RGSKRVTEKSGEETHTSRNVVDWRPTCPPEW*
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mRNA from alignment at L-elsbetiae_contig13951:3600..4299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13951.2961.1 ID=mRNA_L-elsbetiae_contig13951.2961.1|Name=mRNA_L-elsbetiae_contig13951.2961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=700bp|location=Sequence derived from alignment at L-elsbetiae_contig13951:3600..4299+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGTAATGAACAAACGCCGTCTGTATCAGAACTCAAACCGACGAAAGAG
GCGAACTCAAACCGACGAAAGAGGCGACAGGAGACGTCGGTTCGCAACGC
ACACGCAGATACGGCATACACACAGAGAGCGAGAGAAATATACAGAGTCA
GAGAGACATAAGCCTGACGAGGTATCATCTGGCGGCCTATGCCAGAGAGT
CAACGACCCCATGAATGTATACTCTTCTCCTAGAGATGACAGGCGTTTGG
AATACTCGCGCTTCGCACGCAATGCAGGAACGCACACCCGCACAGAAGGG
ACAATGAGAGGAAGCAAGAGAGTCACGGAAAAGAGCGGGGAGGAGACACA
TACGTCTCGGAACGTTGTCGACTGGCGTCCAACCTGCCCGCCAGAGTGGT
AGCGATACTTGCAAATCACACCTCCCCGGCAGAATACCAACTGAGAGATA
TGTAGATCACAGGGCATTGCACCCCACAAAAGTACCGACGCAACACCGCA
TCCTCTGAGTGTTCCACAAGCTTGGCATCCGTGCCGGGGACAACAGAGAG
CACGTCGATAGCAGTGCGAGAGAGAAAATCTATAGCATTGCGACTCAGCG
GCCAAATCTCACTGTCCAGCAGTCCAGACTGCTCAAACTGCAACCAGTAT
CGACTTGAGATCTCGGTACGAACGGAGGTTTTGAACCAAAAGTAAGCCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13951:3600..4299+

>mRNA_L-elsbetiae_contig13951.2961.1 ID=mRNA_L-elsbetiae_contig13951.2961.1|Name=mRNA_L-elsbetiae_contig13951.2961.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig13951:3600..4299+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACAAACGCCGTCTGTATCAGAACTCAAACCGACGAAAGAGGCGAAC
TCAAACCGACGAAAGAGGCGACAGGAGACGTCGGTTCGCAACGCACACGC
AGATACGGCATACACACAGAGAGCGAGAGAAATATACAGAGTCAGAGAGA
CATAAGCCTGACGAGGTATCATCTGGCGGCCTATGCCAGAGAGTCAACGA
CCCCATGAATGTATACTCTTCTCCTAGAGATGACAGGCGTTTGGAATACT
CGCGCTTCGCACGCAATGCAGGAACGCACACCCGCACAGAAGGGACAATG
AGAGGAAGCAAGAGAGTCACGGAAAAGAGCGGGGAGGAGACACATACGTC
TCGGAACGTTGTCGACTGGCGTCCAACCTGCCCGCCAGAGTGGTAGATGA
ACAAACGCCGTCTGTATCAGAACTCAAACCGACGAAAGAGGCGAACTCAA
ACCGACGAAAGAGGCGACAGGAGACGTCGGTTCGCAACGCACACGCAGAT
ACGGCATACACACAGAGAGCGAGAGAAATATACAGAGTCAGAGAGACATA
AGCCTGACGAGGTATCATCTGGCGGCCTATGCCAGAGAGTCAACGACCCC
ATGAATGTATACTCTTCTCCTAGAGATGACAGGCGTTTGGAATACTCGCG
CTTCGCACGCAATGCAGGAACGCACACCCGCACAGAAGGGACAATGAGAG
GAAGCAAGAGAGTCACGGAAAAGAGCGGGGAGGAGACACATACGTCTCGG
AACGTTGTCGACTGGCGTCCAACCTGCCCGCCAGAGTGGTAG
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