mRNA_L-elsbetiae_contig10253.296.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10253.296.1 vs. uniprot
Match: D8LKM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM2_ECTSI) HSP 1 Score: 404 bits (1037), Expect = 1.410e-128 Identity = 266/372 (71.51%), Postives = 279/372 (75.00%), Query Frame = 1 Query: 19 QAQALEAMVSQSGGGXXXXPAAGSNMPPTVNPPGLDEAANNLTLAMAAKRRKGSRATALTLSPTRGSPVRLPGRTPPPHGGKSTSSTPNKNKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTPSQGXXXXXXXEGEEDWVDVEEYDDDDIDAGSRCCCPCWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFVIMLGVAGGWIKRGYATAVVGVSFASVCSHWLISIEHPTSTMEAVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLALVREAMKIFVRSSILLMVLMYLAFECIGCLNSRPEADCAALLYANTEV 1134 +A+ALEAMV Q+GGG AA NMPPT N PGLDEAANNL LAMAA+RRKGSRA LT SP++GSP RL GR P STPN + XXXXXXXXXXXXXXXXXXXXXXX STP++ XXXXXXX CWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYF++MLGVA G IKRGYATAVVGVSFA VCSHWLISIEHPTSTME VHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHL LVREAMKIFVRSS+LLMVLMYLAFECIGCLNSRPEADCAALLYANT+V Sbjct: 547 RAKALEAMVIQNGGGTDS--AATPNMPPTANAPGLDEAANNLALAMAAERRKGSRA-GLTSSPSKGSPPRLSGRKP---------STPNGGRX-------------XXXXXXXXXXXXXXXXXXXXXXXETNGSTALAGNEGAEMMRVSTPTRDXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXACWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFIVMLGVAAGGIKRGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIFVRSSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQV 890
BLAST of mRNA_L-elsbetiae_contig10253.296.1 vs. uniprot
Match: A0A6H5K6P5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6P5_9PHAE) HSP 1 Score: 308 bits (789), Expect = 2.560e-94 Identity = 226/372 (60.75%), Postives = 240/372 (64.52%), Query Frame = 1 Query: 19 QAQALEAMVSQSGGGXXXXPAAGSNMPPTVNPPGLDEAANNLTLAMAAKRRKGSRATALTLSPTRGSPVRLPGRTPPPHGGKSTSSTPNKNKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTPS-QGXXXXXXXEGEEDWVDVEEYDDDDIDAGSRCCCPCWDSFAFWMDQRNTQNNLPVFRLLYFSSTVVYFVIMLGVAGGWIKRGYATAVVGVSFASVCSHWLISIEHPTSTMEAVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLALVREAMKIFVRSSILLMVLMYLAFECIGCLNSRPEADCAALLYANTE 1131 +A+ALE MVSQ+GGG AA NMP T N PGLDEAANNL LAMAA+RRKGSRA LT SP++GSP RL GR SSTPN XXXXXXXXXXXXXXXXXX STP+ +GXXXXXXX EDWV V+ D DD D+ + RGYATAVVGVSFA VCSHWLISIEHPTSTME VHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHL LVREAMKIF+ SS+LLMVLMYLAFECIGCLNSRPEADCAALLYANT+ Sbjct: 328 RAKALEVMVSQNGGGGGS--AATPNMPSTANAPGLDEAANNLALAMAAERRKGSRA-GLTNSPSKGSPPRLSGR---------KSSTPNGGPR-------------QXXXXXXXXXXXXXXXXXXTAATETNGSTPLAGNEGAEMMRVSTPTREGXXXXXXXXXXEDWVAVDGEDGDD-------------------DKEDD------------------------------SRGYATAVVGVSFACVCSHWLISIEHPTSTMEIVHLLLHACTEAISVLLWVSVRDWTQAVYTLSAFFAVYPCLFYGIQALKLGLHRKFSDHLGLVREAMKIFLWSSVLLMVLMYLAFECIGCLNSRPEADCAALLYANTQ 625 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10253.296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10253.296.1 >prot_L-elsbetiae_contig10253.296.1 ID=prot_L-elsbetiae_contig10253.296.1|Name=mRNA_L-elsbetiae_contig10253.296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=378bp MSIVAQQAQALEAMVSQSGGGGAGGPAAGSNMPPTVNPPGLDEAANNLTLback to top mRNA from alignment at L-elsbetiae_contig10253:345..6317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10253.296.1 ID=mRNA_L-elsbetiae_contig10253.296.1|Name=mRNA_L-elsbetiae_contig10253.296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5973bp|location=Sequence derived from alignment at L-elsbetiae_contig10253:345..6317- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10253:345..6317- >mRNA_L-elsbetiae_contig10253.296.1 ID=mRNA_L-elsbetiae_contig10253.296.1|Name=mRNA_L-elsbetiae_contig10253.296.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2268bp|location=Sequence derived from alignment at L-elsbetiae_contig10253:345..6317- (Laminarionema elsbetiae ELsaHSoW15)back to top |