mRNA_L-elsbetiae_contig1395.2958.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1395.2958.1
Unique NamemRNA_L-elsbetiae_contig1395.2958.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1395.2958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1395contigL-elsbetiae_contig1395:1078..4590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size982
Cds size699
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1395.2958.1prot_L-elsbetiae_contig1395.2958.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1395 1825..4590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.7790046-UTR-L-elsbetiae_contig1395:1077..12401622815548.7790046-UTR-L-elsbetiae_contig1395:1077..1240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1395 1078..1240 +
1691682952.9453735-UTR-L-elsbetiae_contig1395:1077..12401691682952.9453735-UTR-L-elsbetiae_contig1395:1077..1240Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1395 1078..1240 +
1622815548.7892506-UTR-L-elsbetiae_contig1395:1704..18241622815548.7892506-UTR-L-elsbetiae_contig1395:1704..1824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1395 1705..1824 +
1691682952.9549437-UTR-L-elsbetiae_contig1395:1704..18241691682952.9549437-UTR-L-elsbetiae_contig1395:1704..1824Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1395 1705..1824 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815548.8026974-CDS-L-elsbetiae_contig1395:1824..23761622815548.8026974-CDS-L-elsbetiae_contig1395:1824..2376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1395 1825..2376 +
1691682952.962603-CDS-L-elsbetiae_contig1395:1824..23761691682952.962603-CDS-L-elsbetiae_contig1395:1824..2376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1395 1825..2376 +
1622815548.81652-CDS-L-elsbetiae_contig1395:4443..45901622815548.81652-CDS-L-elsbetiae_contig1395:4443..4590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1395 4444..4590 +
1691682952.970874-CDS-L-elsbetiae_contig1395:4443..45901691682952.970874-CDS-L-elsbetiae_contig1395:4443..4590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1395 4444..4590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1395.2958.1

>prot_L-elsbetiae_contig1395.2958.1 ID=prot_L-elsbetiae_contig1395.2958.1|Name=mRNA_L-elsbetiae_contig1395.2958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=233bp
MLLPPHAPRWVRQRRQRQQQRGVRGEIKTNASALLLSLALLADKPDVALG
WMHSARHVGGRQQAGGSRSATSLPAAVGTTSPNVARQRMLRLVAVTARRP
GRRSPSRLAGAAGTDPGKTFEAPVVEGAVAGQAATVSNRRSSGESAVVAS
DRRRVDQMKEWGAKGMWREAMEQLEKERRSERKPSLGAYERAILALAAGG
KHAKAVLMLGDVEAAGLVLREEIYSEVIRACGK
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mRNA from alignment at L-elsbetiae_contig1395:1078..4590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1395.2958.1 ID=mRNA_L-elsbetiae_contig1395.2958.1|Name=mRNA_L-elsbetiae_contig1395.2958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3513bp|location=Sequence derived from alignment at L-elsbetiae_contig1395:1078..4590+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAGGCACACCAGGCACGGCCAGGCTGGTCTGCTGCAAACCAAACCTCA
AGCAAGCCTTAAGTTACTCCTTCGTTTTCTCCGTTCTATCCTTCCGCGTG
TTCACCTGAAGTGAAACCGAAGGACGCCCTCCTGTGTGCCCAAACATCAA
CGCATTGCCTGTGGTGAGCGCATGTTTAGTGCTACAAACTGCTGTCTGCT
GTCCCCTGTGTGTGTCGAGGGTGTATTGTATGAGGTTAGCAGACGGAAGG
TCGACACGTGTGCTTCTGCTGTAAACATGTTACTGATCTGTGCGGCAAAG
TACGGCAGGTGTTGCTGGGCTCTATATAACTAGCCAGAATACATGTGGCA
CATTCAAGCTCACTCAAAACATGCGCGCTCTTTGACCATGACGTAACGGT
GAGAGAGAGCTGTGCCTCTCGCCCCTCGAAACCAGCTTGTACGACCGTAG
GTTTCGCTGCGGTTTCGATGGGTGTGGCGAAACCATGGGCCGGTTCTCGT
AGCCATTGTGTGGATTGTCAACTCTCTGCAGTCGGCGGATTTGAACATTT
GAAACCCTCTTGTGACCCACCTCCCTCCCCCACACCAACGCCTGCGCCCC
CCTTCCCCGCGCTGCGGTGATCTCTAGTATCAGACACGGGGATAGAACCA
GGGGCCGCTCGCTTCCCTTCCGCACAGAGCTGAGGCGATGTTCCCGTGAG
AGCTAGAAGTAAACTCTTTTCAGCAGCGTATTTATCTAAGCGTCTTGATG
CTGTTACCACCGCACGCACCCCGATGGGTGCGGCAGCGACGGCAACGCCA
GCAGCAGCGCGGGGTCCGCGGCGAAATCAAGACCAACGCGTCGGCGCTAC
TCCTCTCGCTGGCTCTCCTCGCCGACAAACCGGACGTCGCGCTCGGGTGG
ATGCACAGCGCGCGGCACGTTGGCGGGCGGCAGCAAGCCGGCGGAAGCCG
CAGCGCGACCTCGCTTCCAGCAGCAGTGGGGACGACGAGCCCGAACGTGG
CTAGACAACGGATGCTCCGCTTGGTAGCAGTCACGGCGCGGCGACCAGGG
CGCCGTTCTCCTTCTCGGTTGGCGGGCGCGGCCGGCACCGACCCCGGAAA
AACTTTCGAGGCCCCCGTCGTCGAAGGCGCCGTTGCCGGACAGGCAGCGA
CCGTCAGCAATAGAAGAAGCTCGGGCGAATCGGCGGTGGTCGCGAGCGAT
AGGAGAAGGGTAGATCAGATGAAGGAGTGGGGAGCGAAAGGAATGTGGAG
AGAAGCAATGGAGCAGCTGGAGAAGGAGAGGAGGAGCGAGCGGAAACCGG
TGAGCGGGCTGTTGTGAGGTCTTGCAGTAGCGGACAGGTGCTTTATAGAA
AGGAAAAACAGTTATTGTAATAAAAAATGGAACCTAACCCACATTGAGAC
GAGACTCCGTGAGATTCAATCGGTATTCCATACAAGATCACCCTTCGGAG
CGAGCTCATGAGAACACAGCGGCAGGGGGTGATACAAGACGAAAGAAAAA
AAGGATCTCGAGTTTTGAGCCCAGATCTTTGAACCAAATATTTTGAACTC
AAACTCCTCTTTTCCCGCGAAAAGCAGCTGTGGTCCTTAAGGTTGCGCCG
CTTGGGAAACGATTCGGGGAACGGAGTGTTGGTTCTAAATATTACGCCTC
AAAAACCAGTACAATAAGAACATGTGTTTGGCATCGTAATTTCTAGGGGT
GCCCCACCCCGTTCGGCTGTCCTCAATGCCCTTATCTTGAAGATAATTGT
CTTGGCTTCTTCGTCCGTCTGCTGTTTGGGCTGGTTCGCACGGTGTGCGT
GTTCTTTTCCGCGAAGCAAAACACGACCAGTTTGAGAGAAAATTGAGTCA
TTTGAGAGAGTTTGAAACCACAAAGTTGGCCAGATCGAAAGCTACAACAG
TGCACGGCTCCTGCTGTGGTCCGACTATGTTCCTCCACGGTCCATACAAG
GTGTGCTCAGCCGAAGACCCCGTCTCCAAAGAACGCGAGCGCCCCGTGGG
CGACCCTCGCTGCTGACTACCGCAGGCGTGTACGCAGCAAGGGTTACAGA
CACACAAAAATGCAGTTTTCTCTCACCTCTTTCTGGGGGCACCCCCGCAT
ATTGCTCTCTGTTCTGCTGGTACCAGTGCGAGCTACCCCAAGATAGTCAA
CTCCAAGGACAGACCGAGCGATTCACGATACCATTCTGGATTTGCAGAGT
TTTTCTTTCAAAAGGTCATTTTCGCGGCGAGATAAGCCACCTGGAGTGAC
ATCTACGTAATTTTTTTGTGGGAAGTGGCTCCAGGTGTCGTTTCGGGCTC
TCTGCTGTAATCTTTCCCCCTATTTTCTCGGGATTTGAAACGTGGGAAAA
ACGGACCAACCTTAATCGTCTCGTAATATTGTAGATCACAGCTGCTGTCT
GTAATCGGAAACAGCTCCCTCCAAAACACAGCAATATTACTGAACCGGGT
GCTTCTGTGCGGACGCTCCGCCCTTGTCAACACAGCTGGTGCAGGTCTGT
GCCCCTCAGCAGTGTGCTTATCAGCTTTTTGTTCAACCGAAAAAGAGAGC
TGCTGACGACGTTTTTTTCTTCAACTGAAAAGAGACAGCTGCTGCCATAC
TGACGTTTGTTTGGGCTGTTGGGCGTTTTTTTCTTCAACTGAAAAGAGAC
AGCTGCTGCCATACTGACGTTTGTTTGGGCTGTTGGGAGCCGACAGCCCA
CAGATTCAGAATCGGAACATAAGTTCCCAAGACTCATCTGTAGTTAGTCC
TACAGTGACGTAATATTGGGCCGGCCAAGTAGAAAAACACCTGAAATATA
AGAACAATTCACCGTTCCCCCTGCAAGTCTCTGCCAGGTCAAACAACATG
TGCTTTCGGTATTCGAAGCGTGAGCTCTACGGAGATACTGCTGTATTTAT
ACCTAAGTGAACCCGAAAATACGCAGGTGCTCTCAGGTGAAGCTTGTGCC
ACCCCGGGAAGAGCAATCGGTTGTTAAGCACGCTCATGCAAAGGTTGTTG
CGTTTCGGGTGAAATACCAGCACACGCAGTCACTCCCTCTTTCTCTTCGC
CGTTCCTTCTCGTCTCCGTAGACTTGACTATAAACGTAGATGAAGGACTT
GGAGTATCATGCCATACCGGCGTGCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGCGCGGCGGCGCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNCCTTCCCT
TCCGCCTCCGTAGACTTGACTTTAAACAGGAAAAAAGGGGTTGGAGGATA
ATGCCCATCGGGCGGGCCCCCCCCCCCCCCCCCTTTAACCTAACCTACCG
TCGCGGTCTTCCCCAGAGCTTGGGGGCGTACGAAAGGGCGATACTGGCAT
TGGCAGCGGGCGGCAAGCATGCGAAGGCTGTGTTGATGCTGGGCGACGTC
GAGGCGGCAGGGCTCGTTTTGCGAGAGGAGATCTACAGCGAGGTCATCAG
AGCTTGCGGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1395:1078..4590+

>mRNA_L-elsbetiae_contig1395.2958.1 ID=mRNA_L-elsbetiae_contig1395.2958.1|Name=mRNA_L-elsbetiae_contig1395.2958.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1398bp|location=Sequence derived from alignment at L-elsbetiae_contig1395:1078..4590+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGTTACCACCGCACGCACCCCGATGGGTGCGGCAGCGACGGCAACG
CCAGCAGCAGCGCGGGGTCCGCGGCGAAATCAAGACCAACGCGTCGGCGC
TACTCCTCTCGCTGGCTCTCCTCGCCGACAAACCGGACGTCGCGCTCGGG
TGGATGCACAGCGCGCGGCACGTTGGCGGGCGGCAGCAAGCCGGCGGAAG
CCGCAGCGCGACCTCGCTTCCAGCAGCAGTGGGGACGACGAGCCCGAACG
TGGCTAGACAACGGATGCTCCGCTTGGTAGCAGTCACGGCGCGGCGACCA
GGGCGCCGTTCTCCTTCTCGGTTGGCGGGCGCGGCCGGCACCGACCCCGG
AAAAACTTTCGAGGCCCCCGTCGTCGAAGGCGCCGTTGCCGGACAGGCAG
CGACCGTCAGCAATAGAAGAAGCTCGGGCGAATCGGCGGTGGTCGCGAGC
GATAGGAGAAGGGTAGATCAGATGAAGGAGTGGGGAGCGAAAGGAATGTG
GAGAGAAGCAATGGAGCAGCTGGAGAAGGAGAGGAGGAGCGAGCGGAAAC
CGATGCTGTTACCACCGCACGCACCCCGATGGGTGCGGCAGCGACGGCAA
CGCCAGCAGCAGCGCGGGGTCCGCGGCGAAATCAAGACCAACGCGTCGGC
GCTACTCCTCTCGCTGGCTCTCCTCGCCGACAAACCGGACGTCGCGCTCG
GGTGGATGCACAGCGCGCGGCACGTTGGCGGGCGGCAGCAAGCCGGCGGA
AGCCGCAGCGCGACCTCGCTTCCAGCAGCAGTGGGGACGACGAGCCCGAA
CGTGGCTAGACAACGGATGCTCCGCTTGGTAGCAGTCACGGCGCGGCGAC
CAGGGCGCCGTTCTCCTTCTCGGTTGGCGGGCGCGGCCGGCACCGACCCC
GGAAAAACTTTCGAGGCCCCCGTCGTCGAAGGCGCCGTTGCCGGACAGGC
AGCGACCGTCAGCAATAGAAGAAGCTCGGGCGAATCGGCGGTGGTCGCGA
GCGATAGGAGAAGGGTAGATCAGATGAAGGAGTGGGGAGCGAAAGGAATG
TGGAGAGAAGCAATGGAGCAGCTGGAGAAGGAGAGGAGGAGCGAGCGGAA
ACCGAGCTTGGGGGCGTACGAAAGGGCGATACTGGCATTGGCAGCGGGCG
GCAAGCATGCGAAGGCTGTGTTGATGCTGGGCGACGTCGAGGCGGCAGGG
CTCGTTTTGCGAGAGGAGATCTACAGCGAGGTCATCAGAGCTTGCGGCAA
GAGCTTGGGGGCGTACGAAAGGGCGATACTGGCATTGGCAGCGGGCGGCA
AGCATGCGAAGGCTGTGTTGATGCTGGGCGACGTCGAGGCGGCAGGGCTC
GTTTTGCGAGAGGAGATCTACAGCGAGGTCATCAGAGCTTGCGGCAAG
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