mRNA_L-elsbetiae_contig13946.2956.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig13946.2956.1 vs. uniprot
Match: D7FUX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX0_ECTSI) HSP 1 Score: 664 bits (1714), Expect = 3.530e-222 Identity = 530/981 (54.03%), Postives = 630/981 (64.22%), Query Frame = 1
Query: 1 IQLVVLDHADIKVEDIPPDFVFPEPPXXXXXXXXXXXXXXXXXXXXXXPLRLTSTALAGGALLV------TAVWLGHCSRSRHRSFSHRVLQFSAATERALAEERSARGGRQCNSSGSSGGGTSSVRSLSSSSCGSLRGRAEEAEQQLAGLQELIADGLDIGRQFPWEAARR--GGKESRRLQACARGLSRRLAKVEQAAEELRVMVEVERLLARLDSGGGGXXGVLDGXXFXXXXXXXXXXXXDVGVRSASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGDDT--AARYVPGCVFREELKRWCHRLSEKEQDAVDWLKLGLQRWDLEMVDRALAQLRLLELPEIVKEFQQKREDVRSKRFRLQADLKSANELAAKGDPSRLRKECVKAETFSATDLKEYQSAKRSLKKACATELEVKARRILSAHGVLAHQSYNVCLDLASGPTLLLRDFPDDAELVGGGCAGGDSGGLFIGAGASSCAAAELGVGRQLALQSEGEDGEPCRP------GDATAR---------GVSGGDVMSGAHDCGSPLAQ----------GGDSSIATWGQPPRRGGTEEGEVKRSQRRVQELMLVRRSAKRDFLACVTKQEEEHRRACDKDHAALEARDAEEAHRQEYIARLDMRCVHEEKRLAVERDRLXXXXXXXXXXXXXXXXXXXADRLKRLWSSDGNFLRLLSAADVALTAATVAFKKGFSLAPGAVLNAAWGLVVAECAEGGGDGFGTEAGALGTAPPLCTSSAAIHASSSASVCGMGEALAGYDRACGCADGVWSEGAAAGSGXXXXXSESTLWWAWSTAGSTAGAVIRAGYASAGWLLGQTLGLVTPDVQCEIRVVLSLGAWLLSLVLVMKIIGGLLGRGDGGGIAA---QWVLLAAWVWGRFHDWVLHASHELVLFFAPAPALVLAYGSALRYFEQHRKPDGFWWVNGWDVRFLWSRALPALVSGALSCFLGAQVS 2829
+ LV LDH DIK+ED+PPDFVFPEP XXXXXXXXXXXXXXXXX TA WLG + +R RSFS R+ + A + AL EERS RQ +SS S TS +RSL SSS GSLR RA EAE+Q A LQEL+ +GL++GR++PWEAARR GG+ESRRL++CAR LS+RLAKVE+AA+EL VM EVE+LLARL XX XX XXXXXXXXXXXX XXXX XXXXXXXXXXXXXXXXXX A R CVFREEL RWC RL+E+EQ+AVDWLKLGL+ WDLEM DRALAQLRLLELPEIV+EF++KREDVR KR+RLQ +LK+A ELA +G+PSRLR CVKAETFS DL EY+ AKRSL+ A A LEVKARRILS +G+ A NV LD A GP LLLRD P LV G AG LF GA +S + VGR+L L S + P GDA+ R G G V+ G C SP Q G+S +ATW + GG E + S+R+ + ++ RRSA+ DF+ACVTK EEEHRRAC+++ ++L+ARDAEE++RQ YIARLD R V E+ RL +E+ RL XXXXXXXXXXXXXXXXXX + L + DG+F LSA +V L AA A+KKG SLAPGA+L+AAW L+VAECA+GG G PP C + A ++ S+ G + CG A X SES LWWA S AGSTAGAV+RAGY+S GWLLGQTLG VTP V+CE+R V SL AWLLSL L KI+GGLL GGG A +W+LLA WVW RF WV+ A+ ++L APAPALVLAYG + Y E+HRKPDG WWV GWDVR +W R LPA+V+ L+ FLG + S
Sbjct: 8 VPLVRLDHQDIKIEDVPPDFVFPEPDWLSPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAWLGRRTLARRRSFSLRLRRLCDAADLALEEERSLASARQGSSSSS----TSRLRSLGSSS-GSLRERAAEAERQRAALQELVEEGLELGRRYPWEAARRRRGGEESRRLESCARELSQRLAKVERAAQELGVMAEVEQLLARLAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRPQCTPRRARLSXXXXXXXXXXXXXXXXXXXXXXXXXXARRTDSRCVFREELARWCDRLAEREQEAVDWLKLGLETWDLEMADRALAQLRLLELPEIVQEFEKKREDVRGKRWRLQQELKTAEELAKEGNPSRLRNACVKAETFSCEDLDEYRPAKRSLENAHAARLEVKARRILSIYGIPADPRCNVRLDSAGGPALLLRDVP---RLVDDGGAG-----LFTGADTASPS-----VGRRLVLDSVKREAGEKHPSGAPDNGDASDRRMDVSEENCGRGGNGVVRGEFSC-SPRRQPPADAPAVGVDGNSDVATWARSSAGGG----ETQLSRRQQELVVAARRSAETDFMACVTKLEEEHRRACEREASSLKARDAEESYRQAYIARLDERSVREDARLVMEKKRLQXXXXXXXXXXXXXXXXXXXXXREGLQARDGDFWLALSAFEVCLAAAAAAYKKGISLAPGAILDAAWRLLVAECADGGXXXVVV----TGAMPPFCQNPFGAAAPAATSLEGGTAGALDNNGECG-AGXXXXXXXXXXXXXPSDGSESALWWALSYAGSTAGAVVRAGYSSGGWLLGQTLGRVTPGVRCEVRAVFSLVAWLLSLALAQKIVGGLLLGPGGGGPATGVLRWLLLAVWVWARFQGWVVSAARGMLLLLAPAPALVLAYGLVMGYVERHRKPDGCWWVRGWDVRPVWFRVLPAVVASGLAWFLGGRAS 960
BLAST of mRNA_L-elsbetiae_contig13946.2956.1 vs. uniprot
Match: A0A6H5L440_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L440_9PHAE) HSP 1 Score: 597 bits (1539), Expect = 2.240e-196 Identity = 465/980 (47.45%), Postives = 562/980 (57.35%), Query Frame = 1
Query: 4 QLVVLDHADIKVEDIPPDFVFPEPPXXXXXXXXXXXXXXXXXXXXXXP---LRLTSTA-LAGG--ALLVTAVWLGHCSRSRHRSFSHRVLQFSAATERALAEERSARGGRQCNSSGSSGGGTSSVRSLSSSSCGSLRGRAEEAEQQLAGLQELIADGLDIGRQFPWEAARRGGKESRRLQACARGLSRRLAKVEQAAEELRVMVEVERLLARLDSGGGGXXGVLDGXXFXXXXXXXXXXXXDVGVRSASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGDD----TAARYVPGCVFREELKRWCHRLSEKEQDAVDWLKLGLQRWDLEMVDRALAQLRLLELPEIVKEFQQKREDVRSKRFRLQADLKSANELAAKGDPSRLRKECVKAETFSATDLKEYQSAKRSLKKACATELEVKARRILSAHGVLAHQSYNVCLDLASGPTLLLRDFPDDAELVGGGCAGGDSGGLFIGAGASSCAAAELGVGRQLALQS-EGEDGEPCRPG-----DATAR---------GVSGGDVMSGAHDCGSP---------LAQGGDSSIATWGQPPRRGGTEEGEVKRSQRRVQELMLVRRSAKRDFLACVTKQEEEHRRACDKDHAALEARDAEEAHRQEYIARLDMRCVHEEKRLAVERDRLXXXXXXXXXXXXXXXXXXXADRLKRLWSSDGNFLRLLSAADVALTAATVAFKKGFSLAPGAVLNAAWGLVVAECAEGGGDGFGTEAGAL-GTAPPLCTSSAAIHASSSASVCGMGEALAGYDRACGCADGVWSEGAAAGSGXXXXXSESTLWWAWSTAGSTAGAVIRAGYASAGWLLGQTLGLVTPDVQCEIRVVLSLGAWLLSLVLVMKIIGGLLGRGDGGGIAA---QWVLLAAWVWGRFHDWVLHASHELVLFFAPAPALVLAYGSALRYFEQHRKPDGFWWVNGWDVRFLWSRALPALVSGALSCFLGAQVS 2829
+LV LDH DIK+ED+PPDFVFPEP P LR+ +A LAGG A + TA LG + +R RSFS R+ + A + L EERS RQ NSS SSS G+ G G ESRRL++ A LS+RLAKVE+AA+EL VM EVE LLA L G XX XX XXXXXXXXXXXX G D+G + TA R CVFREEL RWC RL+E+EQ+AVDWLKLGL+ WDLEM DRALAQLRLLELPEIV+EF++KREDVR KR+RLQ +LK+A E A +G+PSRLR CVKAETFS DL EY+ AKRSL+ A A LEV+ARRILS +G+ A NV LD A GP LLLRD P A+ G G LFIGA A+S + VGR+L L S + E GE G DA+ R G G V+ G C P + G +ATW + GG E + S+R+ + ++ RRSA+ DF+A VTK EEEHRRAC+++ ++L+ARDAEE++RQ YIARLD R V E+ RL +E+ RL XXXXXXXXXXXXXXXXX + L + DG F LSA +V L AA A+KKG +LAPGA+L+AAWGL+VAECA+G A+ G PP C + A++ A+ G A D X SES LWWA S AGSTAGAV+RAGY+S GWLLGQTLGLVTPDV+CE+R VLSL AWLLSL L KI+GGLL GGG A +W+LLA WVW RF WV+ A+ ++L AP PALVLAYG + Y E+HRKPDG WWV GWDVR +W R LP +V+ L+ FLG + S
Sbjct: 2 KLVRLDHEDIKIEDVPPDFVFPEPDWLLPPTTPPPPAEGEAASPTPEPASPLRIPPSAGLAGGVFAAVATAACLGRRTLARRRSFSLRLRRLCDAADLVLEEERSLASARQGNSS--------------SSSTSVTLGKPLGGAXXXXGXXXXXXXXXXXG-------------ESRRLESYALELSQRLAKVERAAKELGVMAEVEHLLASL---AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGAAWQRRRNWPQCTPQRARLSTRAALLLSWRPSGSNDNGGEGGGTTARRADSRCVFREELARWCDRLAEREQEAVDWLKLGLETWDLEMADRALAQLRLLELPEIVQEFEKKREDVRGKRWRLQQELKAAEESAKEGNPSRLRNACVKAETFSCEDLDEYRPAKRSLENAHAARLEVQARRILSIYGIPADPRCNVRLDSAGGPALLLRDVPRLADDGGAG--------LFIGADAASPS-----VGRRLVLDSVKQEAGEKHPRGAPDDDDASDRRMDVSEETCGREGNGVVGGEFSCSPPWQPPADAPAVGVNGSGDVATWARSSAGGG----ETQLSRRQQELVLAARRSAETDFMAYVTKLEEEHRRACEREASSLKARDAEESYRQAYIARLDERSVREDARLVMEKKRLQDXXXXXXXXXXXXXXXXXXXXXQELQARDGGFWLALSAFEVCLAAAGAAYKKGINLAPGAILDAAWGLLVAECADGXXXXXXXXXVAVTGAVPPFCENP--FGAAAPAATPLEGGAAGVLDXXXXXXXXXXXXXXXXXXXXRSDGSESALWWALSYAGSTAGAVVRAGYSSGGWLLGQTLGLVTPDVRCEVRAVLSLVAWLLSLALAQKIVGGLLLGPGGGGPATGVLRWLLLAVWVWARFQGWVVSAARGMLLLLAPVPALVLAYGLVMGYVERHRKPDGCWWVRGWDVRPVWFRVLPTVVASGLAWFLGGRAS 932
BLAST of mRNA_L-elsbetiae_contig13946.2956.1 vs. uniprot
Match: D7FU79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU79_ECTSI) HSP 1 Score: 538 bits (1386), Expect = 2.210e-173 Identity = 412/982 (41.96%), Postives = 520/982 (52.95%), Query Frame = 1
Query: 22 HADIKVEDIPP----DFVFPEP-----PXXXXXXXXXXXXXXXXXXXXXXPLRLT-STALAGG--ALLVTAVW---LGHCSRSRHRSFSHRVLQFSAATERALAEERSARGGRQCNSSGSSGGGTSSVRSLSSSSCGSLRGRAEEAEQQLAGLQELIADGLDIGRQFPWEAARRGGKESRRLQACARGLSRRLAKVEQAAEELRVMVEVERLLARLDSGGGGXXGVLDGXXFXXXXXXXXXXXXDVGVRSASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGDDTAARYVPGCVFREELKRWCHRLSEKEQDAVDWLKLGLQRWDLEMVDRALAQLRLLELPEIVKEFQQKREDVRSKRFRLQADLKSANELAAKGDPSRLRKECVKAETFSATDLKEYQSAKRSLKKACATELEVKARRILSAHGVLAHQSYNVCLDLASGPTLLLRDFPDDAELVGGGCAGG--DSGGLFIGAGASSCAAAELGVGRQLALQSEGEDGEPCRPGDATARGVSG--------GDVMSGAHDCG------------------SPLAQGG-DSSIATWGQPPRRGGTEEGEVKRSQRRVQELMLVRRSAKRDFLACVTKQEEEHRRACDKDHAALEARDAEEAHRQEYIARLDMRCVHEEKRLAVERDRLXXXXXXXXXXXXXXXXXXXADRLKRLWSSDGNFLRLLSAADVALTAATVAFKKGFSLAPGAVLNAAWGLVVAECAEGG-GDGFGTEAGALGTAPPLCTSSAAIHASSSASVCGMGEALAGYDR-ACGC--ADGVWSEGAAAGSGXXXXXSESTLWWAWSTAGSTAGAVIRAGYASAGWLLGQTLGLVTPDVQCEIRVVLSLGAWLLSLVLVMKIIGGLLGRGDGGGIAAQWVLLAAWVWGRFHDWVLHASHELVLFFAPAPALVLAYGSALRYFEQHRKPDGFWWVNGWDVRFLWSRALPALVSGALSCFLGAQ 2823
H IK+ P DFVFPEP P PL S LAGG A++ A W + HC+ +R RSFS ++ + AA + AL EERS Q SS SGGG+ +RSL S S GSLR RAEEAE+Q A L+EL+A G ++GR+ PWEAA R SRRL++ AR LS+RLAKVE+AA+EL VM E+E+LL RL S GGG D+ G D+ + GCVFREEL +WC RL+ +E++A DW KLGL+ WDL M DR + QLRLL+ PE V EFQ+KRE VR R+ ++ +LK A + A +GDPS LRK CVKAETFS L EYQ+AK+ LK A A +LE +ARRILS HG+ AH NV D ASGP LLLRD + +L GG G + G G A+ C + R+ L S ++ R G GV D G + G +P +G S +ATW +P G GE S R +EL++VRRSA+ +F VTK +E+H+RAC+K+ + L+A AEE++RQ Y +RLD R E ++A+E R+ RL++L + DG+F LSA +V L AA A+ KG L P VL+AA ++VAECA+GG G E G G AL GYD ACG ADG W AA GS E LWWA S AGSTAGAV+RAGY+S WLLG+TLGLV PDV+CE R V +L A L L L +I+GGLLG G +A +W LL AWVW RF VL A EL++ AP PALV+AYG L Y E++RKP G WWV G DVR +W R LP +VS AL+ FLGA+
Sbjct: 30 HTIIKIPRTDPIIKADFVFPEPLKPVLPPTTPTAAEEASSTTSTKLARASPLITPLSVCLAGGVFAVVAAAAWVRVIRHCTPARRRSFSRKLSRLCAAADLALKEERSPVSAPQGGSS--SGGGSGRLRSLGSDS-GSLRDRAEEAERQQAKLKELLAKGFELGRRVPWEAAWRREDVSRRLESYARELSQRLAKVERAAKELNVMAEIEQLLDRLASDGGGVRSA-----------------RDLSAGGNGGEALDDRSEINDGGRGVIPHRARLSSRAASPLSRRSSGRSDSHSGENTGCVFREELTQWCDRLAVREKEAEDWFKLGLKIWDLNMADRGIEQLRLLQRPETVHEFQEKREIVRHNRWEVEEELKKAVKFAKEGDPSTLRKACVKAETFSGESLDEYQTAKQLLKNAQAAQLEKEARRILSNHGIFAHPRCNVRFDSASGPALLLRDVSGEEKLGDGGDGGSGLEEPGADCGGTAAPC------MCRRHVLDSVKQEAGDHRGGAPDFGGVIARKHRRVDRADESCGRQEEGVARVKCSCSLRRQPMTSAAPAVEGSVGSDVATWARPSG-GAVAGGETLLS--RQEELLVVRRSAETEFKTHVTKLQEDHKRACEKEASRLKAWYAEESYRQAYFSRLDERSFLEASKIAMEMKRMQDEEAHRRREEVDAKRRRDDRRLEKLQARDGDFWLALSALEVCLVAAVAAYNKG--LTPRVVLDAAREVLVAECADGGVGVVVTLEGGTTG-------------------------ALEGYDDGACGARDADGGWWRDAADGS-------EGALWWALSYAGSTAGAVVRAGYSSGRWLLGKTLGLVIPDVRCEARTVFALVASLFFLALASRIVGGLLGSGRAHVVARRW-LLVAWVWARFQGSVLRAVWELLMLLAPTPALVMAYGYVLGYVERYRKPGGRWWVRGRDVRPVWFRVLPTVVSSALAWFLGAR 947 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13946.2956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig13946.2956.1 >prot_L-elsbetiae_contig13946.2956.1 ID=prot_L-elsbetiae_contig13946.2956.1|Name=mRNA_L-elsbetiae_contig13946.2956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=944bp IQLVVLDHADIKVEDIPPDFVFPEPPKPEPSPQEPPATTPTAPTMGTPPLback to top mRNA from alignment at L-elsbetiae_contig13946:879..4215- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig13946.2956.1 ID=mRNA_L-elsbetiae_contig13946.2956.1|Name=mRNA_L-elsbetiae_contig13946.2956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3337bp|location=Sequence derived from alignment at L-elsbetiae_contig13946:879..4215- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig13946:879..4215- >mRNA_L-elsbetiae_contig13946.2956.1 ID=mRNA_L-elsbetiae_contig13946.2956.1|Name=mRNA_L-elsbetiae_contig13946.2956.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5664bp|location=Sequence derived from alignment at L-elsbetiae_contig13946:879..4215- (Laminarionema elsbetiae ELsaHSoW15)back to top |