prot_L-elsbetiae_contig13941.2955.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13941.2955.1
Unique Nameprot_L-elsbetiae_contig13941.2955.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length315
Homology
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 5.680e-77
Identity = 150/209 (71.77%), Postives = 171/209 (81.82%), Query Frame = 0
Query:    1 FCVNAALNACGRTGRMTEALELMKDARTSGIELDVVSYNSAIPACMSGGAWRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKPNVFNYNLAISTCADCGRWEEALELLHYMRDVGGVEXXXXXXXXXXXXXXXXXXXXXXXXIFREISEVGLK 209
            +CVNAAL+ACG+ GR+ EAL LM+DAR SGIELDVVS                    +REM++EYGIKPNHITYQAAIKVCGRCG+ADEAA LL++MKD G+ L T VYSAV NA+RR+DHWQ A +T+  IHDWPVKPNVFNYNLAI TC DCG WEEAL+LLH+MR+VGGVEXXXXXXXXXXXXXXXXXXXXXXXX FRE+SEVG+K
Sbjct:  160 YCVNAALDACGKAGRVQEALGLMRDARASGIELDVVSXXXXXXXXXXXXXXXXXXXXIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTCTDCGEWEEALDLLHFMREVGGVEXXXXXXXXXXXXXXXXXXXXXXXXXFREMSEVGIK 368          
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: A0A438EIQ9_VITVI (Pentatricopeptide repeat-containing protein, chloroplastic n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EIQ9_VITVI)

HSP 1 Score: 68.2 bits (165), Expect = 7.530e-10
Identity = 47/166 (28.31%), Postives = 79/166 (47.59%), Query Frame = 0
Query:    4 NAALNACGRTGRMTEALELMKDARTSGIELDVVSYNSAIPACMSGGAWRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKP-NVFNYNLAISTCADCGRWEEALELLHYMR 168
            NA ++A    G+  EAL L K  +  GIE D +++ S + AC   G   + L++  +M S++ + P    Y   + +  RCG+ DEA +L+L M     A    +  ++L A R  +H +  +      H + ++P N  NY    +  A  GRW E   +   M+
Sbjct:   11 NAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHKMNPIMEHYGCVVSLLSRCGDLDEALRLILTMPFQPDA---HILGSLLTACR--EHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMK 171          
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: A0A438JQ55_VITVI (Pentatricopeptide repeat-containing protein, chloroplastic n=3 Tax=Vitis TaxID=3603 RepID=A0A438JQ55_VITVI)

HSP 1 Score: 68.2 bits (165), Expect = 5.600e-9
Identity = 47/166 (28.31%), Postives = 78/166 (46.99%), Query Frame = 0
Query:    4 NAALNACGRTGRMTEALELMKDARTSGIELDVVSYNSAIPACMSGGAWRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKP-NVFNYNLAISTCADCGRWEEALELLHYMR 168
            NA ++A    G+  EAL L K  +  GIE D +++ S + AC   G   + L++  +M S++ + P    Y   + +  RCG  DEA +L+L M     A    +  ++L A R  +H +  +      H + ++P N  NY    +  A  GRW E   +   M+
Sbjct:  625 NAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFADMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDA---HILGSLLTACR--EHHEIELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMK 785          
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: A0A0A9NHL2_ARUDO (Uncharacterized protein n=3 Tax=Arundo donax TaxID=35708 RepID=A0A0A9NHL2_ARUDO)

HSP 1 Score: 62.4 bits (150), Expect = 1.190e-8
Identity = 30/111 (27.03%), Postives = 62/111 (55.86%), Query Frame = 0
Query:   52 RQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKPNVFNYNLAISTCADCGRWEEALE 162
            ++A+S++ EM+++ GI+P+ ++    +  CGRC +  +   +L   K  GI L T  Y++ + +Y  +  +++A+     +    VKP+   YN+ IS     G++ E+L+
Sbjct:    3 KEAISLLHEMETD-GIQPDVVSISTLLTACGRCRQPAKLGTILAAAKSRGIELNTVAYNSGIGSYLSLGDYEKALELYTLMRASNVKPDAVTYNILISGSCKLGKYAESLD 112          
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: A0A2I0XG48_9ASPA (Pentatricopeptide repeat-containing protein n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XG48_9ASPA)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-8
Identity = 41/120 (34.17%), Postives = 66/120 (55.00%), Query Frame = 0
Query:   32 ELDVVSYNSAIPACMSGGAWRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKPNVFNYNLAISTC 151
            E DV+S+N+ I A    G  ++AL + REM+   GIKPN +T+ AA+  C   G  +EA +L L+MKD GI+     Y+ +++   R  +  EA A I  +   P++P+   +   +  C
Sbjct:  617 ERDVISWNAMISAYGIHGDAKKALEVFREMEMS-GIKPNTVTFLAALSACCHVGLVEEARRLFLRMKDRGISPTLKHYTCMVDVLARSGNLLEAEAMILSM---PIQPDGGIWGALLGAC 732          
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: A0A2N9HE99_FAGSY (ABC transporter domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HE99_FAGSY)

HSP 1 Score: 67.0 bits (162), Expect = 1.580e-8
Identity = 51/171 (29.82%), Postives = 79/171 (46.20%), Query Frame = 0
Query:    4 NAALNACGRTGRMTEALELMKDARTSGIELDVVSYNSAIPACMSGGAWRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQM--KDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKP-NVFNYNLAISTCADCGRWEEALELLHYMRDVG 171
            NA + A    GR  EAL ++K     GIE D +++ S + AC   G   + L +   M S++ +KP    Y   + +  RCG  DEA +L+L M  K +G  L +     +L A R  D  +  +      H   ++P N  NY    +  A  GRW+E   + + M+  G
Sbjct: 1776 NAMICAYALHGRALEALAVLKQLEEEGIEPDNITFTSVLSACSHAGLVNEGLELFSHMVSKFHMKPTMEHYGCVVNLLSRCGNFDEALRLILTMPCKPDGHILGS-----LLAACR--DCHEIELGNYLSKHLLKLEPDNPGNYVALSNANAASGRWDEVSYMRNLMKQKG 1939          
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: UPI001CFA754E (pentatricopeptide repeat-containing protein At5g55740, chloroplastic n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFA754E)

HSP 1 Score: 66.6 bits (161), Expect = 1.780e-8
Identity = 47/169 (27.81%), Postives = 77/169 (45.56%), Query Frame = 0
Query:    4 NAALNACGRTGRMTEALELMKDARTSGIELDVVSYNSAIPACMSGGAWRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKP-NVFNYNLAISTCADCGRWEEALELLHYMRDVG 171
            NA ++     G+  EAL L K     GIE D +++ + + AC   G   + L +   M S++ I+P+   Y   + +  RCG  DEA K++L M     A       +    Y    H  + V  + + H + ++P N  NY    +  A  GRW+E L +   M++ G
Sbjct:  625 NALISGYALHGQAVEALALYKCLLNKGIEPDSITFTNILYACSHAGLVNEGLEIFVNMVSDHNIEPSMEHYGCVVNLLSRCGNLDEAFKVILTMPYKPDAQIIGSLISSCGVY----HETDLVEYLSK-HIFQLEPDNPGNYVALSNAYASAGRWKEVLTVRDLMKEKG 788          
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: A0A2N9HES6_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HES6_FAGSY)

HSP 1 Score: 66.2 bits (160), Expect = 2.330e-8
Identity = 48/169 (28.40%), Postives = 77/169 (45.56%), Query Frame = 0
Query:    4 NAALNACGRTGRMTEALELMKDARTSGIELDVVSYNSAIPACMSGGAWRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKP-NVFNYNLAISTCADCGRWEEALELLHYMRDVG 171
            NA + A    GR  EAL ++K     GIE D +++ S + AC   G   + L +   M S++ +KP    Y   + +  RCG  DEA +L+L +     A    +  ++L A R  D  +  +      H   ++P N  NY    +  A  GRW+E   + + M+  G
Sbjct:  562 NAMICAYALHGRALEALAVLKQLEEEGIEPDNITFTSVLSACSHAGLVNEGLELFSHMVSKFHVKPTMEHYGCVVNLLSRCGNFDEALRLILTLPCKPDA---HILGSLLAACR--DCHEIELGDYLSKHLLKLEPDNPGNYVALSNAYAASGRWDEVSYMRNLMKQKG 725          
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: UPI000CED7B25 (pentatricopeptide repeat-containing protein At5g55740, chloroplastic n=1 Tax=Morus notabilis TaxID=981085 RepID=UPI000CED7B25)

HSP 1 Score: 65.5 bits (158), Expect = 4.270e-8
Identity = 44/169 (26.04%), Postives = 82/169 (48.52%), Query Frame = 0
Query:    4 NAALNACGRTGRMTEALELMKDARTSGIELDVVSYNSAIPACMSGGAWRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKPNVFNYNLAISTC-ADCGRWEEALELLHYMRDVG 171
            NA ++     G+  +AL L       G E D +++ +A+ AC   G   + L +  EM S++ IKP+ + Y   + +  RCG  DEA +L+  M     A    ++ ++L A R  ++ + A     ++ +  ++PN     +A+S   A  G+W+E   + + M+  G
Sbjct:  630 NAMISGYALHGQAMDALALYSSLEEVGTEPDSITFTNALYACSHSGLVNEGLELFVEMVSKHNIKPSMVHYGCMVNLLSRCGNLDEAFRLITSMPYEPDA---HIFGSLLAACRENNNIELAEYLSKKLME--LEPNNSGNYVALSNAYAAAGKWDEVENVRYLMKGKG 793          
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Match: A0A812QRX2_9DINO (MRL1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QRX2_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 5.640e-8
Identity = 43/164 (26.22%), Postives = 78/164 (47.56%), Query Frame = 0
Query:    6 ALNACGRTGRMTEALELMKDARTSGIELDVVSYNSAIPACMSGGAWRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDNGIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVK---PNV--FNYNLAISTCADCGRWEEALELL 164
            A+ AC       EAL + K     G    +  +++      S G W+ A+ ++ +M   + I P+ +TY   + +C +  E     +LL  + + G  L T V  A   A  ++ HW+ A   + ++  W  +   P+    + NLA++TC +  +W++ALELL
Sbjct:   40 AVAACDVAHAWQEALAIAKVMLQQGYGRCLAGFHARAMQHRSVGKWKDAVGLLEDMKL-HQIWPSSVTYALIMTICRQSNEWRWPLQLLASLTEEGFPLDTRVCGAAAGACHQVGHWRWAAWALEKL--WQSRGQGPSADDISLNLALATCKEGRKWQQALELL 200          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13941.2955.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0M5_ECTSI5.680e-7771.77PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A438EIQ9_VITVI7.530e-1028.31Pentatricopeptide repeat-containing protein, chlor... [more]
A0A438JQ55_VITVI5.600e-928.31Pentatricopeptide repeat-containing protein, chlor... [more]
A0A0A9NHL2_ARUDO1.190e-827.03Uncharacterized protein n=3 Tax=Arundo donax TaxID... [more]
A0A2I0XG48_9ASPA1.340e-834.17Pentatricopeptide repeat-containing protein n=1 Ta... [more]
A0A2N9HE99_FAGSY1.580e-829.82ABC transporter domain-containing protein n=2 Tax=... [more]
UPI001CFA754E1.780e-827.81pentatricopeptide repeat-containing protein At5g55... [more]
A0A2N9HES6_FAGSY2.330e-828.40Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
UPI000CED7B254.270e-826.04pentatricopeptide repeat-containing protein At5g55... [more]
A0A812QRX2_9DINO5.640e-826.22MRL1 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 138..227
e-value: 3.5E-21
score: 77.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..137
e-value: 6.2E-33
score: 116.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 231..315
e-value: 9.9E-13
score: 49.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 74..212
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 5..169
e-value: 3.4E-14
score: 52.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 175..222
e-value: 2.2E-12
score: 47.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 178..212
e-value: 5.1E-9
score: 33.8
coord: 144..177
e-value: 1.7E-5
score: 22.6
coord: 2..35
e-value: 4.3E-5
score: 21.4
coord: 36..70
e-value: 5.4E-4
score: 17.9
coord: 264..291
e-value: 7.1E-4
score: 17.6
coord: 72..102
e-value: 7.8E-5
score: 20.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 250..292
e-value: 1.4E-4
score: 21.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..33
score: 8.879
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 70..104
score: 10.369
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 262..292
score: 8.32
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 34..64
score: 8.451
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 176..210
score: 12.704
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 105..139
score: 7.487
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 225..261
score: 5.064
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 140..174
score: 10.15
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 244..290
coord: 3..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13941contigL-elsbetiae_contig13941:307..4391 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13941.2955.1mRNA_L-elsbetiae_contig13941.2955.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13941 307..4391 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13941.2955.1 ID=prot_L-elsbetiae_contig13941.2955.1|Name=mRNA_L-elsbetiae_contig13941.2955.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=315bp
FCVNAALNACGRTGRMTEALELMKDARTSGIELDVVSYNSAIPACMSGGA
WRQALSMVREMDSEYGIKPNHITYQAAIKVCGRCGEADEAAKLLLQMKDN
GIALATPVYSAVLNAYRRIDHWQEAVATIHRIHDWPVKPNVFNYNLAIST
CADCGRWEEALELLHYMRDVGGVEPDVVTYNIVIAACGKAGEIARAIEIF
REISEVGLKPDVISFTTVISALGSSISSSSSGDAGSAELARAASEEAIAI
FHEMSLAGVPPNVITHNSVMAVCVAAGQWERALEIFAGLRDDDNADLLIA
GDSCSFNTALSACEV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat