mRNA_L-elsbetiae_contig1393.2951.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1393.2951.1 vs. uniprot
Match: D8LES5_ECTSI (UVR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES5_ECTSI) HSP 1 Score: 424 bits (1091), Expect = 1.260e-139 Identity = 286/438 (65.30%), Postives = 307/438 (70.09%), Query Frame = 1 Query: 1 APSLYVPSQAPARPHSPLRSRPRRALTRGHGCXXXXXXXXXXXXXXXGFAGEPRAGRRLSRPPTSASSSSSPTSPRRGQGLAMTVAGGEGGCEMEGEVVGDGAESAPVARTEEDGCRDADVVAGXXXXXXXXXXXGTEADQSATSIAEXXXXXXXXXXXXXXXXXXXXXXXXXGGP----------SRRREAPLTEREGFAVAKKVLPAGGEGLEMDLEGLRVMRSQVNKLKRSMRQAVVEEDYKKAGVLRNEVAAIRAKDPLYVVSDLLGIAVSKEKFKRAARLRDAKDWLLRESRGSVFEVDRLVCLGNKASNIITTDPEGATVRRFLRNDQAR*ISRTGQIQLPVWSPDGRMVAFSVLKAGSGGAPIESAKIVVYREGGSLVLDVAVPRAPFLLMXXXXXXXXXXXXXXXXXXXXXIRLSEILVAAATSPYKTKS 1284 APSL+ PS+ A +P +R R L+ HG FA +PR GRRL P SS R + M AG GGCEMEGEVVGDG ESAPVARTE++G RDA GTEADQSA A GGP RRREAPLTEREGFA+ KKVLP GGEGLEMDLEGLR MRS VNK+KRSMR+AV EEDYK AG LRNE+AAIRAKDPLYVVSDLLG+AVSKEKFKRAARLRDAKDW+LRESRGSVFEVDRLVCLG+KASNIITTDPEGATVRRFLRNDQ ISRTGQIQLPVWSPDG+MVAFSVLKAGSGGAPIESAKI+VYRE GSLVLDV VPRAPFLLMXXXXXXXXXXXXXXXXXXXXX LVAAA +PY+TK+ Sbjct: 29 APSLHAPSKPAA---APAAARSCRVLSSRHGGGNGAGT----------FASQPRVGRRL---PYRTSSVG------RLAMMMMAAAGEGGGCEMEGEVVGDGGESAPVARTEDEGARDA---------------GGTEADQSAPVTASSEGQGGGVRSSINSASSSVPGS---GGPVGEVGGRGIVGRRREAPLTEREGFAMVKKVLPGGGEGLEMDLEGLRDMRSNVNKIKRSMRRAVEEEDYKTAGDLRNEMAAIRAKDPLYVVSDLLGVAVSKEKFKRAARLRDAKDWILRESRGSVFEVDRLVCLGDKASNIITTDPEGATVRRFLRNDQVAEISRTGQIQLPVWSPDGKMVAFSVLKAGSGGAPIESAKILVYRESGSLVLDVGVPRAPFLLMXXXXXXXXXXXXXXXXXXXXXXXXXXXLVAAAKTPYRTKT 426
BLAST of mRNA_L-elsbetiae_contig1393.2951.1 vs. uniprot
Match: A0A6H5KNT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT6_9PHAE) HSP 1 Score: 126 bits (317), Expect = 1.340e-30 Identity = 104/227 (45.81%), Postives = 114/227 (50.22%), Query Frame = 1 Query: 1 APSLYVPSQAPARPHSPLRSRPRRALTRGHGCXXXXXXXXXXXXXXXGFAGEPRAGRRLSRPPTSASSSSSPTSPRRGQGLAMTVAGGEGGCEMEGEVVGDGAESAPVARTEEDGCRDADVVAGXXXXXXXXXXXGTEADQSA----TSIAEXXXXXXXXXXXXXXXXXXXXXXXXXGGPS---RRREAPLTEREGFAVAKKVLPAGGEGLEMDLEGLRVMRSQVNK 660 APSL+ P + A P +P +R R L HG FA +PRAGRRL P SS R + M AG GGCEMEGEVVGDGAESAPVARTE++G RDA GTEADQ A +S + GG RRRE PLTEREGFAV KKVLP GGEGLEMDLEGLR MRS VNK Sbjct: 16 APSLHAPGKPAAAP-APAAARSCRVLLSRHGGGNGAGT----------FASQPRAGRRL---PYHTSSVG------RLAMMMMAAAGEGGGCEMEGEVVGDGAESAPVARTEDEGARDA---------------GGTEADQPAPVPASSEEQGGGVRSSISSASSSVPGSGDPVEEVGGRGIIGRRREVPLTEREGFAVVKKVLPGGGEGLEMDLEGLRNMRSNVNK 207 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1393.2951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1393.2951.1 >prot_L-elsbetiae_contig1393.2951.1 ID=prot_L-elsbetiae_contig1393.2951.1|Name=mRNA_L-elsbetiae_contig1393.2951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=245bp MTVAGGEGGCEMEGEVVGDGAESAPVARTEEDGCRDADVVAGAGAGAGASback to top mRNA from alignment at L-elsbetiae_contig1393:17236..26377+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1393.2951.1 ID=mRNA_L-elsbetiae_contig1393.2951.1|Name=mRNA_L-elsbetiae_contig1393.2951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9142bp|location=Sequence derived from alignment at L-elsbetiae_contig1393:17236..26377+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1393:17236..26377+ >mRNA_L-elsbetiae_contig1393.2951.1 ID=mRNA_L-elsbetiae_contig1393.2951.1|Name=mRNA_L-elsbetiae_contig1393.2951.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1470bp|location=Sequence derived from alignment at L-elsbetiae_contig1393:17236..26377+ (Laminarionema elsbetiae ELsaHSoW15)back to top |