prot_L-elsbetiae_contig13904.2936.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig13904.2936.1
Unique Nameprot_L-elsbetiae_contig13904.2936.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length279
Homology
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BLAST of mRNA_L-elsbetiae_contig13904.2936.1 vs. uniprot
Match: A0A6H5K9D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9D2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.160e-8
Identity = 74/192 (38.54%), Postives = 85/192 (44.27%), Query Frame = 0 
Query:   58 VSRAATKTFRHATTTPAGRLSSRRLLFAAAYHRTPAFVALSLPHDGDAARARXXXXXXXXXXXXXXXXXXXXXXXXXXXNNVAGIGGRDPRPAVAAGSYRSVAPGAGLDGYHRRPGIPSEIFGGGGRGVVGGGVPA--------------------------------RGLS-YGPSTMCQQASAVPQTEDY 216
            +SRAA KTFRHATT PAGR SSRRLL ++ Y +TP FVAL  P  G A  A                              V G G R  R +     Y SVA GAG  G + RPG  +  F GGGR + G G  A                                RGLS Y  STMCQQASA+PQT ++
Sbjct:  184 LSRAAAKTFRHATT-PAGRRSSRRLLASSCY-KTPGFVALR-PLAGGAGGANDGHGRRQSTA-------------------VVGEGWRGLRISAPVARY-SVAQGAGT-GDNERPG--ASDFVGGGRVLTGSGAGAADGAWGRRRDWDDVIGXXXXXXXXXXXXXRIARGLSSYRSSTMCQQASALPQTAEH 349
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13904.2936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9D2_9PHAE7.160e-838.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13904contigL-elsbetiae_contig13904:2130..2966 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13904.2936.1mRNA_L-elsbetiae_contig13904.2936.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig13904 2130..2968 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig13904.2936.1 ID=prot_L-elsbetiae_contig13904.2936.1|Name=mRNA_L-elsbetiae_contig13904.2936.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=279bp
GAGAEAFRTRAAALGVAPAAPPAASPTVEVPSAATVTALVRRGGEAAAGA
AAAAGRVVSRAATKTFRHATTTPAGRLSSRRLLFAAAYHRTPAFVALSLP
HDGDAARARRLRASSGGGNANAGGGVGKRSSSSSSSNNVAGIGGRDPRPA
VAAGSYRSVAPGAGLDGYHRRPGIPSEIFGGGGRGVVGGGVPARGLSYGP
STMCQQASAVPQTEDYRPRNSQQQQQQRYQQQQQYQRPPQHSQQQYEQQY
EQQYQQHLGAPAPQERYRRAVAGGGAQQW
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