mRNA_L-elsbetiae_contig1390.2932.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1390.2932.1
Unique NamemRNA_L-elsbetiae_contig1390.2932.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 7.220e-22
Identity = 74/168 (44.05%), Postives = 102/168 (60.71%), Query Frame = 2 
Query:  905 TPLHMAARRAAEATVTAGDHDKVVDILLRWGADETIVDEEGTAPIDLLEANVDGPHSMQE-AERARKLLVNAPADRAWRRRGFLVLCRAYPKRV-QRRQESRLSDANMARKTRSRARLARAGAGASINCGSAVGNTLTVRNGDDLGSVAVRVVGLEEDDLFRTIVGYL 1402
            TPL  A R+A           +VV+ LLR GADETI + +G   +D++  +V+    + E  ER R+LL NAPADRAWRRRG+L++CRA P RV +RR  S     N+AR+TRSRA++ARA        G A  +T+    G +   V  +V+ L+E+ +FRTIV YL
Sbjct:  245 TPLMKAGRQAGRQGAA-----EVVNSLLRAGADETIANVQGNKAVDMIGEDVEEEDRLTEDVERVRELLANAPADRAWRRRGYLIMCRAQPDRVPERRMTSGTHYTNVARRTRSRAKMARAR-------GIAGESTVDESTGGNWAVVVSKVISLQEEGIFRTIVEYL 400
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BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: D7FYD0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.500e-17
Identity = 70/155 (45.16%), Postives = 92/155 (59.35%), Query Frame = 2 
Query:  968 KVVDILLRWGADETIVDEEGTAPIDLLEANVDGPHSMQ--------EAERARKLLVNAPADRAWRRRGFLVLCRAYPKRVQRRQESRLSD-ANMARKTRSRARLARAGA-GASINCGSAVGNTLTVRNGDDLGSVAVRVVGLEEDDLFRTIVGYL 1402
            ++VD+LLR GADET  D  G  P D +       H M+        E     +LL NAPADRAWRRRG LVLCRA+ +R + RQE        ++R+TRSRA+LAR+ A GA    G+  G T     GD+  S + RVV LEE+ +FR++VG+L
Sbjct:  279 ELVDLLLRRGADETTPDRNGQQPADRV------GHCMELGDVLLGHEVVLVHELLANAPADRAWRRRGLLVLCRAWLRRSRLRQEDGGDTRGGLSRRTRSRAKLARSDAVGAGCRRGTPEGGT-----GDEWRSASKRVVELEEEGIFRSVVGFL 422
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BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: D7G0W2_ECTSI (Ankyrin repeat domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W2_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.930e-17
Identity = 81/204 (39.71%), Postives = 112/204 (54.90%), Query Frame = 2 
Query:  818 QERGLVAVL-ALLRNGAEVNAASRRFLVGQTPLHMAARRAAEATVTAGDHDKVVDILLRWGADETIVDEEGTAPIDLLEANVDGPH----SMQEAERARKLLVNAPADRA---WRRRGFLVLCRAYPKRVQRRQESRLSDANMARKTRSRARLARAGAGASINCGSAVGNTLTVRNGDDLGSVAVR-VVGLEEDDLFRTIVGYL 1402
            ++ G  AV+ AL R+GA+V+A  +    G TPLH+AA+       T     + VD LL+ GADET +D +G  P+D+LEA +        S+ EAER R +LVNAP DRA   W RR F V+CRA+P RV      RL+  +    T  RA+   A A  ++  G    N    R+  D    A+R ++ L+ED LFR IV +L
Sbjct:   92 RQAGNAAVIEALARHGADVHA--QETPSGNTPLHVAAQNC-----TTESSWETVDALLKAGADETRLDCQGQTPLDVLEARIAAGDLMGASVNEAERTRSVLVNAPKDRAQRAWSRRSFFVMCRAHPDRV------RLTVVDDTT-TSPRAKKTMAAAATAVGSGRRGAN----RDSADNFQRAMRSLIRLKEDGLFRKIVAFL 277
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BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: D7G981_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G981_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.070e-16
Identity = 67/155 (43.23%), Postives = 89/155 (57.42%), Query Frame = 2 
Query:  950 TAGDHD--KVVDILLRWGADETIVDEEGTAPIDLLEANVDGPHSM-QEAERARKLLVNAPADRAWRRRGFLVLCRAYPKRVQRRQE-SRLSDANMARKTRSRARLARAGAGASINCGSAVGNTLTVRNGDDLGSVAVRVVGLEEDDLFRTIVGYL 1402
            +AGD    +VVD+LLRW ADET  D  G  P +++        SM    +R  KLL  AP DRAWRRRG LVLCRA+P+R+  RQ  S + ++ + R TRSR +L        +  GS  G     R   +  ++  RV+GL+E  +FRTIVGYL
Sbjct:  249 SAGDEGAVEVVDLLLRWNADETDDDAYGHTPGNIVGCMTPETDSMFVNVQRVWKLLQYAPQDRAWRRRGMLVLCRAHPERLGLRQNASHVQESTVLRVTRSRTKLVER---EQVAGGSGEGAAADGRTAREWSNMVYRVLGLDEG-IFRTIVGYL 399
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BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.750e-16
Identity = 56/122 (45.90%), Postives = 76/122 (62.30%), Query Frame = 2 
Query:  815 CQERGLVAVLALLRNGAEVNAASRRFLVGQTPLHMAARRAAEATVTAGDHDKVVDILLRWGADETIVDEEGTAPIDLLEANVDG---PHSMQEAERARKLLVNAPADRAWRRRGFLVLCRAY 1171
            C      A LAL ++GA + A   R   G+TPL +AAR+A    VTA     +VD+LLR GADET ++ +G    +++  +++    P + Q+ ER R LL NAPADRAWRRRG LVLCRA+
Sbjct:  229 CSNHCHEAALALFKHGANIEARDMR---GETPLIIAARQAGRQGVTA-----IVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRAWRRRGLLVLCRAF 342
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BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.560e-15
Identity = 71/192 (36.98%), Postives = 102/192 (53.12%), Query Frame = 2 
Query:  839 VLALLRNGAEVNAASRRFLVGQTPLHMAARRAAEATVTAGDHDKVVDILLRWGADETIVDEEGTAPIDL---LEAN-VDGPHSMQEAERARKLLVNAPADRAWRRRGFLVLCRAYPKRVQRRQESRLSDANMARKTRSRARLARAGAGASINCGSAVGNTLTVRNGDDLGSVAVRVVGLEEDDLFRTIVGYL 1402
            + ALL  GA +NA   R     TPLH+A  R             VV++LLRWGADE + + +G  P D+   LE N +D      + +R  ++L  APADR+WRRRG+LVL R+ P RV     S  S ++++R   + A++AR     S        + + V    DL  +  R+VGLE + LFR +VG+L
Sbjct:  337 ICALLEGGANINA---RTAGDDTPLHIACTRL---------RGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSS-SSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMV----DLRDLVGRLVGLEAEGLFRLVVGFL 511
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BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.880e-15
Identity = 54/115 (46.96%), Postives = 76/115 (66.09%), Query Frame = 2 
Query:  836 AVLALLRNGAEVNAASRRFLVGQTPLHMAARRAAEATVTAGDHDKVVDILLRWGADETIVDEEGTAPIDLLEANVDG---PHSMQEAERARKLLVNAPADRAWRRRGFLVLCRAY 1171
            A LAL ++G+ + A   R + G+TPL +AAR+A    VTA     +VD+LLR GADET ++ +G    +++  +++    P + Q+ ER R LL NAP DRAWRRRGFLVLCRA+
Sbjct:  187 AALALYKHGSNIEA---RDIRGETPLIIAARQAGRQGVTA-----IVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAF 293
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BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: A0A6H5JHY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.970e-15
Identity = 79/199 (39.70%), Postives = 110/199 (55.28%), Query Frame = 2 
Query:  818 QERGLVAVLALLRNGAEVNAASRRFLVGQTPLHMAARRAAEATVTAGDHDKVVDILLRWGADETIVDEEGTAPIDLLEANVDGPHSMQE-AERARKLLVNAPADRAWRRRGFLVLCRA-YPK-RVQ-RRQESRLSDANMARKTRSRARLARAGAGASINCGSAVGNTLTVRNGDDLGSVAVRVVGLEEDDLFRTIVGYL 1402
            QE  L A +ALLR+GA V    ++    QTPLH+ A +A           ++VD+LLR GADET V E G    D++    +   S+ E  +R RKLL  APADRAWRRRGFL+L RA YP  RVQ   + S+   A +A++TRS    +RA     I+    V  ++ + +G D     + ++G   + +F  IVGYL
Sbjct:  598 QEGRLAAGIALLRHGASVG---KKNAAAQTPLHLVAAKAGSPGTA-----EMVDLLLRRGADETAVSENGHTAADMVVLKTEESDSLAEDVDRVRKLLARAPADRAWRRRGFLILSRAHYPGGRVQFGHRTSQAPAAGVAKRTRSSEEPSRA----EIDWAGVV--SMLMGDGVD----PISLMGDGANLIFEKIVGYL 778
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BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: Q8QNP0_ESV1K (EsV-1-21 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP0_ESV1K)

HSP 1 Score: 90.1 bits (222), Expect = 3.840e-15
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 2 
Query:  842 LALLRNGAEVNAASRRFLVGQTPLHMAARRAAEATVTAGDHDKVVDILLRWGADETIVDEEGTAPIDLLEANVDGPHSMQEAERARKLLVNAPADRAWRRRGFLVL 1159
            L LLR GA+VNA+   F  G + LH A +            + +VD+LLRWGADET+VD+ G  P+D+  +      + +  ER RKLLVNAPADR WRRRG+LV+
Sbjct:  379 LLLLRYGADVNASGGLF--GSSALHNAIKNRDNT-------EAMVDLLLRWGADETVVDDRGRTPLDVFTSGTRFQRTAETKERVRKLLVNAPADRTWRRRGWLVM 475
[Close]
BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Match: D8LP53_ECTSI (EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP53_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 6.690e-15
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = 2 
Query:  842 LALLRNGAEVNAASRRFLVGQTPLHMAARRAAEATVTAGDHDKVVDILLRWGADETIVDEEGTAPIDLLEANVDGPHSMQEAERARKLLVNAPADRAWRRRGFLVL 1159
            L LLR GA+VN  +R +L G + LH        A     + + +VD+LLRWGADET+VD  G  P++ L  +    HS +  ++ RKLLVNAPADR WRRRG+LV+
Sbjct:  321 LLLLRYGADVN--TRCYLFGSSVLH-------NACTNRDNTEALVDLLLRWGADETVVDSSGRTPMNHLTEDRFTRHSAETKDKVRKLLVNAPADRTWRRRGWLVM 417
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1390.2932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXK5_9PHAE7.220e-2244.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYD0_ECTSI1.500e-1745.16Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
D7G0W2_ECTSI2.930e-1739.71Ankyrin repeat domain protein n=1 Tax=Ectocarpus s... [more]
D7G981_ECTSI7.070e-1643.23Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5KNU3_9PHAE9.750e-1645.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQN0_ECTSI1.560e-1536.98Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D7G6X8_ECTSI1.880e-1546.96Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JHY9_9PHAE2.970e-1539.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QNP0_ESV1K3.840e-1547.17EsV-1-21 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP53_ECTSI6.690e-1547.17EsV-1-21 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1390contigL-elsbetiae_contig1390:16646..19729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue3.4e-18
Seed eggNOG ortholog2880.D7FYD0
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size2210
Cds size1299
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1390.2932.1prot_L-elsbetiae_contig1390.2932.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1390 16752..18050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.598251-UTR-L-elsbetiae_contig1390:16645..167511622815546.598251-UTR-L-elsbetiae_contig1390:16645..16751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1390 16646..16751 +
1691682951.8493931-UTR-L-elsbetiae_contig1390:16645..167511691682951.8493931-UTR-L-elsbetiae_contig1390:16645..16751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1390 16646..16751 +
1622815546.6201382-UTR-L-elsbetiae_contig1390:18050..180581622815546.6201382-UTR-L-elsbetiae_contig1390:18050..18058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1390 18051..18058 +
1691682951.8723092-UTR-L-elsbetiae_contig1390:18050..180581691682951.8723092-UTR-L-elsbetiae_contig1390:18050..18058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1390 18051..18058 +
1622815546.6307209-UTR-L-elsbetiae_contig1390:18932..197291622815546.6307209-UTR-L-elsbetiae_contig1390:18932..19729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1390 18933..19729 +
1691682951.8830347-UTR-L-elsbetiae_contig1390:18932..197291691682951.8830347-UTR-L-elsbetiae_contig1390:18932..19729Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1390 18933..19729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.6095626-CDS-L-elsbetiae_contig1390:16751..180501622815546.6095626-CDS-L-elsbetiae_contig1390:16751..18050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1390 16752..18050 +
1691682951.8608007-CDS-L-elsbetiae_contig1390:16751..180501691682951.8608007-CDS-L-elsbetiae_contig1390:16751..18050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1390 16752..18050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1390.2932.1

>prot_L-elsbetiae_contig1390.2932.1 ID=prot_L-elsbetiae_contig1390.2932.1|Name=mRNA_L-elsbetiae_contig1390.2932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=433bp
MDRSDNSPLEALRGDAEHIFELVFESGTDRQVAEMLRAPLECAVLRGEYD
MVQKLLGAGASMGGSVHAAVTSGREQMVDYLLMHGGSVRDTDAPEKGTPL
HAAAQSGQLVIARSLLLRGAKVNAKDYNQGTPLFRAARHGHVAVVEALLA
AGADDTLRLYGLTRPLETAARHGHTDVMRALIENGSDVNFYGIDGRTALQ
GAALSQKAEAVDVLVEAGANLEVRCVMGRTALHVAACQERGLVAVLALLR
NGAEVNAASRRFLVGQTPLHMAARRAAEATVTAGDHDKVVDILLRWGADE
TIVDEEGTAPIDLLEANVDGPHSMQEAERARKLLVNAPADRAWRRRGFLV
LCRAYPKRVQRRQESRLSDANMARKTRSRARLARAGAGASINCGSAVGNT
LTVRNGDDLGSVAVRVVGLEEDDLFRTIVGYL*
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mRNA from alignment at L-elsbetiae_contig1390:16646..19729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1390.2932.1 ID=mRNA_L-elsbetiae_contig1390.2932.1|Name=mRNA_L-elsbetiae_contig1390.2932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3084bp|location=Sequence derived from alignment at L-elsbetiae_contig1390:16646..19729+ (Laminarionema elsbetiae ELsaHSoW15)
GGCAAACGACACCTGCTGCTGGCTCAGGGCTGACTGCGCACGTCCACATC
CATCCGCAAGAAGTGGGGGGCGAAAGACGCACCACTTCCCCTAATTCGTG
GTGATCATGGATCGCAGTGATAACAGCCCGCTCGAAGCTCTCCGAGGAGA
TGCGGAGCATATTTTTGAGCTCGTGTTCGAAAGTGGCACCGATCGACAAG
TGGCCGAGATGCTTCGGGCTCCACTCGAGTGCGCGGTGTTGCGTGGAGAA
TATGACATGGTGCAGAAGCTTCTTGGGGCTGGTGCCAGTATGGGGGGCTC
GGTGCATGCCGCTGTTACAAGCGGCCGTGAACAGATGGTGGATTATCTTC
TGATGCACGGAGGGTCTGTCCGGGACACGGATGCCCCCGAAAAAGGTACC
CCTCTCCACGCTGCTGCCCAAAGTGGTCAACTGGTGATTGCGCGTTCATT
GTTACTCAGGGGTGCTAAAGTAAACGCGAAGGACTATAACCAAGGTACAC
CACTGTTCCGGGCAGCCAGGCACGGGCATGTGGCCGTGGTAGAAGCTCTC
TTGGCTGCCGGTGCCGACGACACCCTTCGTTTGTACGGCTTAACGCGGCC
GCTCGAGACTGCCGCACGGCACGGTCATACGGATGTCATGAGGGCTTTGA
TCGAGAACGGTTCCGACGTGAACTTTTATGGCATCGACGGCAGAACAGCT
CTTCAGGGGGCCGCGCTTAGCCAAAAGGCGGAGGCGGTCGATGTACTTGT
CGAGGCTGGAGCCAACCTCGAAGTCAGGTGTGTTATGGGACGCACAGCTC
TGCACGTTGCTGCTTGCCAGGAGCGTGGTCTCGTTGCCGTTCTCGCCCTG
TTAAGGAATGGTGCAGAGGTCAACGCAGCGTCCAGGCGGTTCTTGGTAGG
ACAAACACCGTTGCACATGGCAGCGCGCAGGGCCGCAGAGGCGACGGTGA
CAGCCGGCGACCACGACAAGGTGGTGGACATCCTGCTCCGATGGGGAGCC
GATGAGACGATCGTCGACGAAGAGGGCACAGCCCCCATCGATTTACTGGA
AGCTAACGTCGACGGACCGCACAGCATGCAGGAGGCTGAGCGCGCACGGA
AGCTGCTGGTCAACGCCCCGGCCGACAGGGCGTGGCGTCGCCGGGGCTTT
CTGGTGTTGTGCCGTGCATACCCGAAGCGGGTGCAGCGTAGACAGGAGAG
CCGCTTGTCGGACGCCAATATGGCCCGGAAGACCCGCAGCCGCGCTCGGC
TGGCAAGGGCAGGGGCGGGTGCAAGCATCAACTGCGGAAGCGCCGTTGGC
AACACCCTGACTGTGCGGAATGGTGACGACTTGGGCAGTGTGGCGGTGAG
GGTGGTGGGGCTGGAGGAGGACGACCTATTTCGGACGATCGTGGGGTACC
TATGAAGCTGCCGGTGAGACGAGTTTGTTGTAAATAGCGTCATCAATTTT
CTTTTAAGCGTGTGGAATGCCTATGGTACATGCCACACGATGTTGTAAAG
CATGAGAGATTTCGAATACTGAAATTATCGGCGTTGGTTTTATCCAGTTG
TGTTGCACCACGCACCCCTTTTGCTCTACAACCTCCCTGCCCGAGGTCGA
GCGCCTGGTGAGCAGGCCCCTCAAATCACCCACGAACGACACCGTATGTG
CGCGAGTTTCATGTTATGATCTGAACCTTGTTCTCTCGTCTGACTGTGCT
AAGTACTAAGTACGCGCCTTGGAAGTTCGGTACAGCACCACTCCACTTCG
AGTACTCTGTGTCACAGGGATTGCTAGCGCTCTCGGCGGTTGGTCGATGT
TGCTTTTGAATATATTCACGATAGCAGCGAGCTGCACAGGCACGACTACA
ATACCTTGGAAGTCCTGTCTACGCGTACTCTCGTTGTTCCTTGCGCCCGC
GCAAACCTCGTGACTACACCAAAACGACAAGAGCAGATGTCAGTCCAGGC
CTAACGCTTGGATTCAAATGATTCGCTAGCATTGCAGTCGCCAGCAAAAA
TGTTCTTGTTACTCCTTTTGTTTCAAAATCAGAGAGTAATATCGGTGAGA
AGTTGCCGAGCTTGTATTATATTCCAAGAGGCGAAGTCAACATCACCGGC
TACACTTCACACTAGTTGGGTTCATGCGCTGGCCCACCATCAGTGGTCTT
TCATGGATAGGCCTTATTTACCTGTATACCGGCTTTCCCAGACTCCCGGT
GCTCTAGCCTCCTAACCAGGCATTTGGTTGATTCATCCGCCGTGCCTTTA
TACCCTGCTTCCCCCCCTCCCCTTGCCCCACCGCCAGGACCGAAGCCTCC
GACAACGGTGGAAGCTTTTTGAGCTACGGGGGATTCCTTGAGCCAGATAA
TTTCACCTGTGCGGTTGTACTACGTAGATGCGCCGGTAGACAGCGGAGTG
GCGATTTGATATTTCAGGCACAGGTAGCAGACGTACCTAGATAGAGGTAT
AACCCTAGAGACTCTGTGTGATACTGTCGTGTCTGTGGGCTGTATTTCAG
GCACGAGTGGTAGACCTACAGAGCGACACCGTACGATAATGTCATGTCGG
TGGCTGCGCCGTGGTGGCTGCCCCTAGGTTTTGTCTTGGGCTGGAAATGA
AGCTTGGCGGCGGAGGCGATCGTGAAGGTGATGTTGTAGCCACAACGTAA
GCGAGAAGGTGTGGACGTGGCGCAAGGATTTTTTCTGTGGTTGGTTGTCA
TGGCAGTAACAAGAGAGGCAGAGTGAACGATGGATCAAGAGCGCTGCGTA
ATAATGATGAAGATCGACCGTATGACGCGCACGCCTGATGGTGGTCTTTG
TTTGTATGTATCATAACTGTAGGCTGGGCATCCTGGGGCATCTGATCGCC
AGCCATGAAACATTTCGTGCCGGGGAGGAAATTCGTGTACCTAGTTCAGT
CACGCTTGATTAACGAGGCGCCTTTTTATAGGCCGATCGTGTGTACCATC
CCTGCTCCGCATTCTGGCAGGTATGCAGCTGGTTTTATTTTTGTGGTCGT
ATCGCTGTGCGTCGACAAGTGTATCCGTCTTGTAATACATCCATACTTAA
CATATGTATGACGAAATCCAAACGGTTGGTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1390:16646..19729+

>mRNA_L-elsbetiae_contig1390.2932.1 ID=mRNA_L-elsbetiae_contig1390.2932.1|Name=mRNA_L-elsbetiae_contig1390.2932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2598bp|location=Sequence derived from alignment at L-elsbetiae_contig1390:16646..19729+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATCGCAGTGATAACAGCCCGCTCGAAGCTCTCCGAGGAGATGCGGA
GCATATTTTTGAGCTCGTGTTCGAAAGTGGCACCGATCGACAAGTGGCCG
AGATGCTTCGGGCTCCACTCGAGTGCGCGGTGTTGCGTGGAGAATATGAC
ATGGTGCAGAAGCTTCTTGGGGCTGGTGCCAGTATGGGGGGCTCGGTGCA
TGCCGCTGTTACAAGCGGCCGTGAACAGATGGTGGATTATCTTCTGATGC
ACGGAGGGTCTGTCCGGGACACGGATGCCCCCGAAAAAGGTACCCCTCTC
CACGCTGCTGCCCAAAGTGGTCAACTGGTGATTGCGCGTTCATTGTTACT
CAGGGGTGCTAAAGTAAACGCGAAGGACTATAACCAAGGTACACCACTGT
TCCGGGCAGCCAGGCACGGGCATGTGGCCGTGGTAGAAGCTCTCTTGGCT
GCCGGTGCCGACGACACCCTTCGTTTGTACGGCTTAACGCGGCCGCTCGA
GACTGCCGCACGGCACGGTCATACGGATGTCATGAGGGCTTTGATCGAGA
ACGGTTCCGACGTGAACTTTTATGGCATCGACGGCAGAACAGCTCTTCAG
GGGGCCGCGCTTAGCCAAAAGGCGGAGGCGGTCGATGTACTTGTCGAGGC
TGGAGCCAACCTCGAAGTCAGGTGTGTTATGGGACGCACAGCTCTGCACG
TTGCTGCTTGCCAGGAGCGTGGTCTCGTTGCCGTTCTCGCCCTGTTAAGG
AATGGTGCAGAGGTCAACGCAGCGTCCAGGCGGTTCTTGGTAGGACAAAC
ACCGTTGCACATGGCAGCGCGCAGGGCCGCAGAGGCGACGGTGACAGCCG
GCGACCACGACAAGGTGGTGGACATCCTGCTCCGATGGGGAGCCGATGAG
ACGATCGTCGACGAAGAGGGCACAGCCCCCATCGATTTACTGGAAGCTAA
CGTCGACGGACCGCACAGCATGCAGGAGGCTGAGCGCGCACGGAAGCTGC
TGGTCAACGCCCCGGCCGACAGGGCGTGGCGTCGCCGGGGCTTTCTGGTG
TTGTGCCGTGCATACCCGAAGCGGGTGCAGCGTAGACAGGAGAGCCGCTT
GTCGGACGCCAATATGGCCCGGAAGACCCGCAGCCGCGCTCGGCTGGCAA
GGGCAGGGGCGGGTGCAAGCATCAACTGCGGAAGCGCCGTTGGCAACACC
CTGACTGTGCGGAATGGTGACGACTTGGGCAGTGTGGCGGTGAGGGTGGT
GGGGCTGGAGGAGGACGACCTATTTCGGACGATCGTGGGGTACCTATGAA
TGGATCGCAGTGATAACAGCCCGCTCGAAGCTCTCCGAGGAGATGCGGAG
CATATTTTTGAGCTCGTGTTCGAAAGTGGCACCGATCGACAAGTGGCCGA
GATGCTTCGGGCTCCACTCGAGTGCGCGGTGTTGCGTGGAGAATATGACA
TGGTGCAGAAGCTTCTTGGGGCTGGTGCCAGTATGGGGGGCTCGGTGCAT
GCCGCTGTTACAAGCGGCCGTGAACAGATGGTGGATTATCTTCTGATGCA
CGGAGGGTCTGTCCGGGACACGGATGCCCCCGAAAAAGGTACCCCTCTCC
ACGCTGCTGCCCAAAGTGGTCAACTGGTGATTGCGCGTTCATTGTTACTC
AGGGGTGCTAAAGTAAACGCGAAGGACTATAACCAAGGTACACCACTGTT
CCGGGCAGCCAGGCACGGGCATGTGGCCGTGGTAGAAGCTCTCTTGGCTG
CCGGTGCCGACGACACCCTTCGTTTGTACGGCTTAACGCGGCCGCTCGAG
ACTGCCGCACGGCACGGTCATACGGATGTCATGAGGGCTTTGATCGAGAA
CGGTTCCGACGTGAACTTTTATGGCATCGACGGCAGAACAGCTCTTCAGG
GGGCCGCGCTTAGCCAAAAGGCGGAGGCGGTCGATGTACTTGTCGAGGCT
GGAGCCAACCTCGAAGTCAGGTGTGTTATGGGACGCACAGCTCTGCACGT
TGCTGCTTGCCAGGAGCGTGGTCTCGTTGCCGTTCTCGCCCTGTTAAGGA
ATGGTGCAGAGGTCAACGCAGCGTCCAGGCGGTTCTTGGTAGGACAAACA
CCGTTGCACATGGCAGCGCGCAGGGCCGCAGAGGCGACGGTGACAGCCGG
CGACCACGACAAGGTGGTGGACATCCTGCTCCGATGGGGAGCCGATGAGA
CGATCGTCGACGAAGAGGGCACAGCCCCCATCGATTTACTGGAAGCTAAC
GTCGACGGACCGCACAGCATGCAGGAGGCTGAGCGCGCACGGAAGCTGCT
GGTCAACGCCCCGGCCGACAGGGCGTGGCGTCGCCGGGGCTTTCTGGTGT
TGTGCCGTGCATACCCGAAGCGGGTGCAGCGTAGACAGGAGAGCCGCTTG
TCGGACGCCAATATGGCCCGGAAGACCCGCAGCCGCGCTCGGCTGGCAAG
GGCAGGGGCGGGTGCAAGCATCAACTGCGGAAGCGCCGTTGGCAACACCC
TGACTGTGCGGAATGGTGACGACTTGGGCAGTGTGGCGGTGAGGGTGGTG
GGGCTGGAGGAGGACGACCTATTTCGGACGATCGTGGGGTACCTATGA
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