mRNA_L-elsbetiae_contig1389.2925.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1389.2925.1
Unique NamemRNA_L-elsbetiae_contig1389.2925.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1389.2925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1389contigL-elsbetiae_contig1389:9266..11362 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size443
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815545.7842414-CDS-L-elsbetiae_contig1389:9266..94111622815545.7842414-CDS-L-elsbetiae_contig1389:9266..9411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1389 9267..9411 -
1691682951.4212759-CDS-L-elsbetiae_contig1389:9266..94111691682951.4212759-CDS-L-elsbetiae_contig1389:9266..9411Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1389 9267..9411 -
1622815545.8005447-CDS-L-elsbetiae_contig1389:11066..113621622815545.8005447-CDS-L-elsbetiae_contig1389:11066..11362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1389 11067..11362 -
1691682951.4302597-CDS-L-elsbetiae_contig1389:11066..113621691682951.4302597-CDS-L-elsbetiae_contig1389:11066..11362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1389 11067..11362 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1389.2925.1prot_L-elsbetiae_contig1389.2925.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1389 9267..11362 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1389.2925.1

>prot_L-elsbetiae_contig1389.2925.1 ID=prot_L-elsbetiae_contig1389.2925.1|Name=mRNA_L-elsbetiae_contig1389.2925.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
PLERKAVRRQLARSNTQGFRPFILPPKSVLSTRQGIGERARVFTKKASCR
PEARNQALSFTEASLGLVHWFFVMMSSQRNHALRADNQINSTYKRATHRG
AFGVVLGDKENAGSEARAAAAAKGKLAREIARHLEGPAPFAGARGKQ
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mRNA from alignment at L-elsbetiae_contig1389:9266..11362-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1389.2925.1 ID=mRNA_L-elsbetiae_contig1389.2925.1|Name=mRNA_L-elsbetiae_contig1389.2925.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2097bp|location=Sequence derived from alignment at L-elsbetiae_contig1389:9266..11362- (Laminarionema elsbetiae ELsaHSoW15)
CCACTGGAAAGGAAAGCGGTCCGCCGGCAGCTGGCCCGTTCAAACACGCA
AGGATTTCGACCGTTTATTCTCCCGCCGAAGAGTGTTTTATCTACTCGAC
AGGGAATTGGAGAGAGAGCCCGGGTTTTCACAAAAAAAGCCAGCTGTCGC
CCTGAAGCCAGAAATCAAGCGTTGTCGTTCACTGAAGCCAGCCTGGGATT
AGTTCACTGGTTTTTTGTGATGATGTCAAGCCAGCGGAATCACGCGTTGC
GTGCGGACAACCAGATCAACTCGACTTACAAAAGGGCGACACACCGGTGG
GTGCGGTTTATTTGCGGTTGTGTACAAGTGGGGCGTGTATGTCTGTACAT
AAGTGTGTGCCATTTGGTGTGCCATGTGCCTTGGGAGAAATAGATTCGAA
CACGCGCCCGCTGGCGGCAAGCGTTTGTGAGGTACGCACGCGTTCAACGC
TGTCGCGCGACTCCTCTCTCGACCCCTCGCCTACTCTGTCCTCTCCGTGG
GTGCGCAGTGTTGGTGCAGCCGCCGTCCTGGCCTGGCATCACAGGCTGCA
TTTTATTTGCAGCCTGTTGGCGGCTGCTGCGTGGTCCGAGCAAGCTGTAG
CTCCTTGCAGTTTCCGATCATGTTGCAACCTCTACCTTTTCGCGCCAAAT
CATGTTGCAACCGCAACCTTTTTCGTGGGGTGGCGAACGACGGGCGACAA
CAGTGGTCGTGTGCGCACCATATGTATATGTCAGGTGTCGGCCCGCCGCC
CATTGTTTCGATTCTCTCTCTAAACTTAAAATTACGGGGAAGAATGCGTG
CCCTCTTCAAAAAAACAATTTCCTTGTGGGCGCCAGATTTAAAAAAAACG
ATCCGGTATGCATACATAATATTTACAGTATATACTTGTAGTAGTACTCC
ATATTTAGTAGCCCCCACCTTCGCCGTTTCCACCGGTCTGCACCATGCAC
GGCGGTAGCTGGGTCAGTGAAGAATAGTTGTGGTGGAGACCGTAGACCCC
AAGCGCACGCCAAGATACGTTGCCCCGCTGTGCGTGTTGCCGTGTTTGTT
GGTTATTTAATACCGGTACTGTTGTATTACCTCGGGCGGTTGGCGCCTCC
GGTGGCGGCGGGAGAATCCCCGGAGCGCGTTGGGGGCCTGGCCACAAAGA
TACAGCCGTTGTAATTTCTCTACATAACTTTCCCGCCTCCTCGAAAATGA
GGAAATCTAATCTTGGGCTTTTTTTTCTCCATGGACGTTGTGTGTTCTTT
CATGCACAGCTTGCTCTCTGTACATTCCAGGCATGTTCATATTTAGGCAT
GCGATGGTTGTGGTATTCTACCTAGCAGTACCAACGCAGTTAGTGACTCA
GACAGATACCGCCGGGCGCGTATGAATGTACCATATTTTGTTTTCTTTTT
CTTCGGCGTCGTCGAGTGTGCCTTGTTTTGTGACCACGGGCCCCCAAGGA
TGTTTTGGGCTACAGAGCTAATGTGAGAAACGACAGCAACAACAACAACA
ACAACAACAACAACAACAGGGTGCTGTCTCTCTATTCCCAACACATTCAG
CGGGCATTTTTCTCTTGGGTATGTTTGGGCCTTCTCTCTTGATAACATAA
ATATTGACTTCTTCCACGCGTGCCTGACCAGCGCTAAGTGTGCAGAGATA
CCTTGCACAGCGTGCAGACCTAAAAGGAGGACGCTTTGCGACAACCCCTG
CCCCCTATAAATGAACTCGCGCATTCGAGTCGACAACACCCTGACTCCTT
CACTTCCGACCCTTTCAAAAGATAAATAAAAAATGCGGCCTAACTAAAGA
GTACTAGACTACACACGTGAAGGGTTTGAGGGCTCTCAAAGCAAAAGCAC
TGACTCCGATGCCTCCGTCCCCGCCTTCTCTCTTTCCACCGCCCCGCCGC
CGCACCGCACTCACCCCCCTCAATTTTCCCACAACACGCGCTCTCTCTCA
GCGGGGCATTCGGGGTGGTTCTCGGGGACAAGGAAAACGCCGGGTCTGAG
GCCCGCGCTGCCGCCGCCGCCAAAGGCAAGCTCGCACGAGAAATCGCGCG
CCATCTGGAAGGACCGGCCCCCTTCGCGGGCGCACGCGGCAAGCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1389:9266..11362-

>mRNA_L-elsbetiae_contig1389.2925.1 ID=mRNA_L-elsbetiae_contig1389.2925.1|Name=mRNA_L-elsbetiae_contig1389.2925.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig1389:9266..11362- (Laminarionema elsbetiae ELsaHSoW15)
CCACTGGAAAGGAAAGCGGTCCGCCGGCAGCTGGCCCGTTCAAACACGCA
AGGATTTCGACCGTTTATTCTCCCGCCGAAGAGTGTTTTATCTACTCGAC
AGGGAATTGGAGAGAGAGCCCGGGTTTTCACAAAAAAAGCCAGCTGTCGC
CCTGAAGCCAGAAATCAAGCGTTGTCGTTCACTGAAGCCAGCCTGGGATT
AGTTCACTGGTTTTTTGTGATGATGTCAAGCCAGCGGAATCACGCGTTGC
GTGCGGACAACCAGATCAACTCGACTTACAAAAGGGCGACACACCGCCAC
TGGAAAGGAAAGCGGTCCGCCGGCAGCTGGCCCGTTCAAACACGCAAGGA
TTTCGACCGTTTATTCTCCCGCCGAAGAGTGTTTTATCTACTCGACAGGG
AATTGGAGAGAGAGCCCGGGTTTTCACAAAAAAAGCCAGCTGTCGCCCTG
AAGCCAGAAATCAAGCGTTGTCGTTCACTGAAGCCAGCCTGGGATTAGTT
CACTGGTTTTTTGTGATGATGTCAAGCCAGCGGAATCACGCGTTGCGTGC
GGACAACCAGATCAACTCGACTTACAAAAGGGCGACACACCGCGGGGCAT
TCGGGGTGGTTCTCGGGGACAAGGAAAACGCCGGGTCTGAGGCCCGCGCT
GCCGCCGCCGCCAAAGGCAAGCTCGCACGAGAAATCGCGCGCCATCTGGA
AGGACCGGCCCCCTTCGCGGGCGCACGCGGCAAGCAGCGGGGCATTCGGG
GTGGTTCTCGGGGACAAGGAAAACGCCGGGTCTGAGGCCCGCGCTGCCGC
CGCCGCCAAAGGCAAGCTCGCACGAGAAATCGCGCGCCATCTGGAAGGAC
CGGCCCCCTTCGCGGGCGCACGCGGCAAGCAG
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