prot_L-elsbetiae_contig10243.290.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10243.290.1
Unique Nameprot_L-elsbetiae_contig10243.290.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length243
Homology
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BLAST of mRNA_L-elsbetiae_contig10243.290.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.770e-5
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 0 
Query:  166 STCGTAPRQRNQATEQRKRTAEMLAEEAKQAEARAEVLRRRNNPEAKVEREAXXXXXXXXXAPRENRVDDPRPGLVV 242
            S+  TA + RN+  EQRK TAE LA+E +  +ARAE LRRRN+PE K +R+A         A  E  V +  PGLVV
Sbjct: 1343 SSVSTALQHRNEMREQRKHTAEALADETRAKKARAEALRRRNDPEVKAKRKAAAKAAAAEVA--ERAVTEACPGLVV 1417
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10243.290.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JA82_9PHAE2.770e-548.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 176..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10243contigL-elsbetiae_contig10243:5000..6793 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10243.290.1mRNA_L-elsbetiae_contig10243.290.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10243 4982..6793 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10243.290.1 ID=prot_L-elsbetiae_contig10243.290.1|Name=mRNA_L-elsbetiae_contig10243.290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
ATALLDENARISRQTGKQETPIKTLDHVQLFEVRTRTFAAAAQVQTVTWA
LLAHARREEIRRSKKKCALKTQNKQSQAADQVGTADHRDARKAGNVSGTP
ARLVVAAAAAARDDKGCRRKKHRDGGVNSPAPKVAAVAAAAAAAGGDGDG
DGDGNRDGSAAAAASSTCGTAPRQRNQATEQRKRTAEMLAEEAKQAEARA
EVLRRRNNPEAKVEREAAAKAAAAAAAPRENRVDDPRPGLVV*
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