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Homology
BLAST of mRNA_L-elsbetiae_contig10243.290.1 vs. uniprot
Match: A0A6H5JA82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA82_9PHAE) HSP 1 Score: 54.7 bits (130), Expect = 7.350e-5 Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1
Query: 496 STCGTAPRQRNQATEQRKRTAEMLAEEAKQAEARAEVLRRRNNPEAKVEREAXXXXXXXXXAPRENRVDDPRPGLVV 726
S+ TA + RN+ EQRK TAE LA+E + +ARAE LRRRN+PE K +R+A A E V + PGLVV
Sbjct: 1343 SSVSTALQHRNEMREQRKHTAEALADETRAKKARAEALRRRNDPEVKAKRKAAAKAAAAEVA--ERAVTEACPGLVV 1417
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 749 |
| Cds size | 729 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815254.39301-UTR-L-elsbetiae_contig10243:4981..4999 | 1622815254.39301-UTR-L-elsbetiae_contig10243:4981..4999 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10243 4982..4999 - |
| 1691682798.4620004-UTR-L-elsbetiae_contig10243:4981..4999 | 1691682798.4620004-UTR-L-elsbetiae_contig10243:4981..4999 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig10243 4982..4999 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815254.4025936-CDS-L-elsbetiae_contig10243:4999..5485 | 1622815254.4025936-CDS-L-elsbetiae_contig10243:4999..5485 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10243 5000..5485 - |
| 1691682798.4733233-CDS-L-elsbetiae_contig10243:4999..5485 | 1691682798.4733233-CDS-L-elsbetiae_contig10243:4999..5485 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10243 5000..5485 - |
| 1622815254.419516-CDS-L-elsbetiae_contig10243:6329..6465 | 1622815254.419516-CDS-L-elsbetiae_contig10243:6329..6465 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10243 6330..6465 - |
| 1691682798.4838626-CDS-L-elsbetiae_contig10243:6329..6465 | 1691682798.4838626-CDS-L-elsbetiae_contig10243:6329..6465 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10243 6330..6465 - |
| 1622815254.429555-CDS-L-elsbetiae_contig10243:6686..6793 | 1622815254.429555-CDS-L-elsbetiae_contig10243:6686..6793 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10243 6687..6793 - |
| 1691682798.4997184-CDS-L-elsbetiae_contig10243:6686..6793 | 1691682798.4997184-CDS-L-elsbetiae_contig10243:6686..6793 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10243 6687..6793 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10243.290.1 >prot_L-elsbetiae_contig10243.290.1 ID=prot_L-elsbetiae_contig10243.290.1|Name=mRNA_L-elsbetiae_contig10243.290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=243bp
ATALLDENARISRQTGKQETPIKTLDHVQLFEVRTRTFAAAAQVQTVTWA
LLAHARREEIRRSKKKCALKTQNKQSQAADQVGTADHRDARKAGNVSGTP
ARLVVAAAAAARDDKGCRRKKHRDGGVNSPAPKVAAVAAAAAAAGGDGDG
DGDGNRDGSAAAAASSTCGTAPRQRNQATEQRKRTAEMLAEEAKQAEARA
EVLRRRNNPEAKVEREAAAKAAAAAAAPRENRVDDPRPGLVV* back to topmRNA from alignment at L-elsbetiae_contig10243:4982..6793- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10243.290.1 ID=mRNA_L-elsbetiae_contig10243.290.1|Name=mRNA_L-elsbetiae_contig10243.290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1812bp|location=Sequence derived from alignment at L-elsbetiae_contig10243:4982..6793- (Laminarionema elsbetiae ELsaHSoW15)
GCGACCGCTTTATTGGATGAGAATGCACGAATCAGTCGACAAACCGGGAA
GCAAGAAACCCCCATCAAAACTTTGGACCACGTGCAACTGTTCGAAGTTC
GAACAAGGTACGGATCGTCAAGCCTTGGGGGGAAATGGTCCTGTATGTGA
GTAGGGGACAGAGTTCGGACGGAAGAGTTTCACATGCCGTGTAAAACGTA
CACAACTCTGGCCACAATTGGATCAGGTTCGATCGGTTGGTTGGTTCGCT
GCCTTCGTTTCTGCGCTTCCTAAACAGAAGCGTTTTATTGGATTTTTCGT
GCGATATTGGCCTGTTTGCTCTGCCCAGGACATTTGCTGCTGCTGCACAG
GTCCAGACCGTGACGTGGGCGCTCCTTGCGCACGCTCGGCGCGAGGAAAT
ACGGCGGAGCAAGAAAAAGTGCGCTTTGAAGACGCAGAACAAACAATCGC
AAGCGGCCGATCAGGTGCGACAGCCTAACTAGCTGCTTAGCTACGAGTAG
GCGACGAACGACATGAATAAAGCAGAGAGGAGATCGTTTGGCGCGGGGGA
GAGTCAATGATTGCCGACCTTGGAGACAGTTTATCCTTTTGTCCAACTTA
TCCATCAGCCGGCATCAACGACGTGGCAACGAAGCCGACCGAATTACTCG
CAACAACCGTACAGATCGACGGGAGTCATTCGGTGGGAGTAGTTGCTGGC
TCTTTCGTCCAGTCGCGGGGCGTTCATGGCTGTTGCTCGCTTTGGTTTCG
TTTGTGGTTTTCTTCCTCGAAGCTTCTTTTTCCGCTATTCCTTTCTGAAG
GGCAGATGTCTAGATGTTCATGGTTTCACGGGGGGTAACATTCAGTGGCG
CTACGGTAAATAGCACCCGATCCCCTATACGCTGGGGCGTCTACGCGGCA
GTGTTGTTTGTGTTGACCGAAATCGGCCCCCGTGCAGATTTAGCCTCTTG
GGAAGGTGGCAAGCGTCTATAGGCGAGGCCCGACATGTGTATGAGGGCAA
GACGCAAGGCTTCTCTGGCCCTCGTGCGGTGGTAGGCTCAAACGTGTTGG
CTCTCGCTTTCGAGCGCATCATGTCCCACTCGACAGTCCAAGATCTTGGG
GCGAGTTTTCCATTCGTGCACCACCAATCTAGCTTTTCCGCGCGAGCACA
CACGGCTACTGCCTTGCTTTTGCCTGCTCGCTCACCATCGATGGCACGGC
TGAGTTGTCATCAGGCCAATGCTGAAGACGCCTTGCCCACGCCAACCGGT
GGACGTGGCTAACCCCAAAGCCTATATCTCTGCCTGTTCCCTGCCTGTGC
TCATTCAGGTCGGTACTGCTGATCATCGAGACGCAAGAAAGGCGGGCAAT
GTTTCGGGCACACCAGCACGGCTCGTGGTGGCGGCGGCAGCGGCGGCCAG
AGATGACAAAGGCTGCCGCAGAAAGAAACACAGAGACGGCGGCGTAAATA
GTCCCGCGCCGAAAGTCGCCGCCGTCGCCGCAGCAGCAGCAGCAGCCGGC
GGCGATGGCGATGGTGATGGCGATGGCAACAGGGATGGCAGCGCGGCCGC
GGCAGCTTCCAGCACTTGCGGCACCGCGCCCCGGCAGCGCAACCAGGCGA
CAGAGCAGCGCAAGCGGACGGCGGAGATGCTCGCGGAGGAAGCCAAGCAA
GCAGAGGCCCGGGCAGAGGTGCTTCGCCGGCGGAACAACCCGGAGGCGAA
AGTGGAGCGCGAGGCCGCTGCCAAGGCCGCCGCCGCCGCCGCCGCCCCGA
GGGAGAACAGGGTCGACGACCCGCGCCCCGGACTGGTTGTCTAGGCGGTG
CTCGAAAGCAGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10243:4982..6793- >mRNA_L-elsbetiae_contig10243.290.1 ID=mRNA_L-elsbetiae_contig10243.290.1|Name=mRNA_L-elsbetiae_contig10243.290.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1458bp|location=Sequence derived from alignment at L-elsbetiae_contig10243:4982..6793- (Laminarionema elsbetiae ELsaHSoW15)
GCGACCGCTTTATTGGATGAGAATGCACGAATCAGTCGACAAACCGGGAA
GCAAGAAACCCCCATCAAAACTTTGGACCACGTGCAACTGTTCGAAGTTC
GAACAAGGCGACCGCTTTATTGGATGAGAATGCACGAATCAGTCGACAAA
CCGGGAAGCAAGAAACCCCCATCAAAACTTTGGACCACGTGCAACTGTTC
GAAGTTCGAACAAGGACATTTGCTGCTGCTGCACAGGTCCAGACCGTGAC
GTGGGCGCTCCTTGCGCACGCTCGGCGCGAGGAAATACGGCGGAGCAAGA
AAAAGTGCGCTTTGAAGACGCAGAACAAACAATCGCAAGCGGCCGATCAG
GACATTTGCTGCTGCTGCACAGGTCCAGACCGTGACGTGGGCGCTCCTTG
CGCACGCTCGGCGCGAGGAAATACGGCGGAGCAAGAAAAAGTGCGCTTTG
AAGACGCAGAACAAACAATCGCAAGCGGCCGATCAGGTCGGTACTGCTGA
TCATCGAGACGCAAGAAAGGCGGGCAATGTTTCGGGCACACCAGCACGGC
TCGTGGTGGCGGCGGCAGCGGCGGCCAGAGATGACAAAGGCTGCCGCAGA
AAGAAACACAGAGACGGCGGCGTAAATAGTCCCGCGCCGAAAGTCGCCGC
CGTCGCCGCAGCAGCAGCAGCAGCCGGCGGCGATGGCGATGGTGATGGCG
ATGGCAACAGGGATGGCAGCGCGGCCGCGGCAGCTTCCAGCACTTGCGGC
ACCGCGCCCCGGCAGCGCAACCAGGCGACAGAGCAGCGCAAGCGGACGGC
GGAGATGCTCGCGGAGGAAGCCAAGCAAGCAGAGGCCCGGGCAGAGGTGC
TTCGCCGGCGGAACAACCCGGAGGCGAAAGTGGAGCGCGAGGCCGCTGCC
AAGGCCGCCGCCGCCGCCGCCGCCCCGAGGGAGAACAGGGTCGACGACCC
GCGCCCCGGACTGGTTGTCTAGGTCGGTACTGCTGATCATCGAGACGCAA
GAAAGGCGGGCAATGTTTCGGGCACACCAGCACGGCTCGTGGTGGCGGCG
GCAGCGGCGGCCAGAGATGACAAAGGCTGCCGCAGAAAGAAACACAGAGA
CGGCGGCGTAAATAGTCCCGCGCCGAAAGTCGCCGCCGTCGCCGCAGCAG
CAGCAGCAGCCGGCGGCGATGGCGATGGTGATGGCGATGGCAACAGGGAT
GGCAGCGCGGCCGCGGCAGCTTCCAGCACTTGCGGCACCGCGCCCCGGCA
GCGCAACCAGGCGACAGAGCAGCGCAAGCGGACGGCGGAGATGCTCGCGG
AGGAAGCCAAGCAAGCAGAGGCCCGGGCAGAGGTGCTTCGCCGGCGGAAC
AACCCGGAGGCGAAAGTGGAGCGCGAGGCCGCTGCCAAGGCCGCCGCCGC
CGCCGCCGCCCCGAGGGAGAACAGGGTCGACGACCCGCGCCCCGGACTGG
TTGTCTAG back to top
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