mRNA_L-elsbetiae_contig13790.2869.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13790.2869.1
Unique NamemRNA_L-elsbetiae_contig13790.2869.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: D7FRE1_ECTSI (TGc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE1_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 4.580e-30
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGKWVHVDPCE 183
            RY AVSKVL+T+RGRCGEYSVL +RLLEALGY+CRWVVDW+DHVWVEARV  +WVHVDPCE
Sbjct:  345 RYTAVSKVLDTQRGRCGEYSVLMLRLLEALGYTCRWVVDWADHVWVEARVDRRWVHVDPCE 405
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: A0A6H5K8G8_9PHAE (TGc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8G8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 6.960e-30
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    1 RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGKWVHVDPCE 183
            RY AVSKVL+T RGRCGEYSVL +RLLEALGY+CRWVVDW+DHVWVEARV  +WVHVDPCE
Sbjct:  367 RYTAVSKVLDTHRGRCGEYSVLMLRLLEALGYTCRWVVDWADHVWVEARVDRRWVHVDPCE 427
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: A0A7S2V382_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V382_9STRA)

HSP 1 Score: 108 bits (269), Expect = 3.350e-26
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGKWVHVDPCE 183
            R+  V +VL+TRRGRCGEYS+L +R LEALGY+CRWVVDW+DHVWVE ++ G+WVHVDPCE
Sbjct:  347 RFNNVDRVLDTRRGRCGEYSMLMLRFLEALGYTCRWVVDWADHVWVEVQLHGRWVHVDPCE 407
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: A0A7S0FTH4_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FTH4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.060e-23
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGKWVHVDPCE 183
            RY + S VL +RRGRCGEYS+L +R   ALG+  RWVVDWSDHVW E R+   W+HVDPCE
Sbjct:   19 RYNSASSVLRSRRGRCGEYSMLILRFFRALGHEARWVVDWSDHVWAEIRLFDGWIHVDPCE 79
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: A0A7S2WLC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLC0_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.890e-22
Identity = 41/62 (66.13%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 RYVAVSKVL-ETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGKWVHVDPCE 183
            RY  V KVL ET+RGRCGEYSV A+ LL++LGY  RW+VDW+DH+W E RV G+W+H+DPCE
Sbjct:  312 RYNDVVKVLSETKRGRCGEYSVAALALLDSLGYETRWIVDWADHLWTEVRVDGEWIHLDPCE 373
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: A0A7S2UHF0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHF0_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.550e-22
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGKWVHVDPCE 183
            R+ + + V++ +RGRCGEYS+L  R L ALG+  RWVVDW+DHVW E R+GG+WVH+DPCE
Sbjct:  221 RFNSATWVIDHKRGRCGEYSILCYRFLRALGHEARWVVDWADHVWAEVRIGGRWVHLDPCE 281
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: A0A7S0H9U2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0H9U2_9CRYP)

HSP 1 Score: 96.7 bits (239), Expect = 5.360e-22
Identity = 39/61 (63.93%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGKWVHVDPCE 183
            RY  VSKV+ETR+GRCGEYS+L   +++ALGY  RWVVDW+DHVWVE  + G W+H+D CE
Sbjct:  369 RYNTVSKVIETRKGRCGEYSMLMYHIMQALGYQTRWVVDWTDHVWVEVDMHGSWLHLDACE 429
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: A0A7S4U6J7_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4U6J7_GUITH)

HSP 1 Score: 94.4 bits (233), Expect = 3.360e-21
Identity = 36/61 (59.02%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGKWVHVDPCE 183
            RY  V+KV+ET++GRCGEYS+    ++++LGY  RWVVDW+DHVWVE  +GG W+H+D CE
Sbjct:  347 RYNTVNKVIETKKGRCGEYSMFMYHVMQSLGYETRWVVDWTDHVWVEVDLGGSWLHLDACE 407
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: W7UBJ5_9STRA (Peptide-n-(N-acetyl-beta-glucosaminyl)asparagine amidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBJ5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.460e-20
Identity = 42/62 (67.74%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:    1 RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGK-WVHVDPCE 183
            R V++  VL+TRRGRCGEYS L  +  EALGY  RWVVDW DHVWVE R+ GK WVH+DPCE
Sbjct:  465 RSVSLRHVLQTRRGRCGEYSRLFFKTTEALGYVSRWVVDWEDHVWVEVRLPGKGWVHLDPCE 526
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BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Match: K8ZCD2_NANGC (Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZCD2_NANGC)

HSP 1 Score: 89.7 bits (221), Expect = 1.920e-20
Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    1 RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARVGGK-WVHVDPCE 183
            R V++  VL+TRRGRCGEYS L  +  EALGY   WVVDW DHVWVE R+ GK WVH+DPCE
Sbjct:  152 RSVSLRHVLQTRRGRCGEYSRLFFKTTEALGYVSCWVVDWEDHVWVEVRLPGKGWVHLDPCE 213
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13790.2869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE1_ECTSI4.580e-3083.61TGc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K8G8_9PHAE6.960e-3083.61TGc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2V382_9STRA3.350e-2672.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0FTH4_9STRA4.060e-2363.93Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2WLC0_9STRA1.890e-2266.13Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2UHF0_9STRA2.550e-2260.66Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S0H9U2_9CRYP5.360e-2263.93Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4U6J7_GUITH3.360e-2159.02Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
W7UBJ5_9STRA1.460e-2067.74Peptide-n-(N-acetyl-beta-glucosaminyl)asparagine a... [more]
K8ZCD2_NANGC1.920e-2066.13Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13790contigL-elsbetiae_contig13790:4198..4380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue3.4e-25
Seed eggNOG ortholog2880.D7FRE1
Preferred namePNG1
KEGG koko:K01456
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000224,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006056,GO:0006058,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0016787,GO:0016810,GO:0016811,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0033554,GO:0034976,GO:0035966,GO:0035967,GO:0035977,GO:0036211,GO:0036503,GO:0042221,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0050896,GO:0051603,GO:0051716,GO:0051787,GO:0051788,GO:0070887,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0097466,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1904587
EggNOG free text desc.Specifically deglycosylates the denatured form of N- linked glycoproteins in the cytoplasm and assists their proteasome-mediated degradation. Cleaves the beta-aspartyl- glucosamine (GlcNAc) of the glycan and the amide side chain of Asn, converting Asn to Asp. Prefers proteins containing high- mannose over those bearing complex type oligosaccharides. Can recognize misfolded proteins in the endoplasmic reticulum that are exported to the cytosol to be destroyed and deglycosylate them, while it has no activity toward native proteins. Deglycosylation is a prerequisite for subsequent proteasome-mediated degradation of some, but not all, misfolded glycoproteins
EggNOG OGsKOG0909@1,KOG0909@2759
EC3.5.1.52
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.207375-CDS-L-elsbetiae_contig13790:4197..43801622815539.207375-CDS-L-elsbetiae_contig13790:4197..4380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13790 4198..4380 +
1691682948.0071075-CDS-L-elsbetiae_contig13790:4197..43801691682948.0071075-CDS-L-elsbetiae_contig13790:4197..4380Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13790 4198..4380 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13790.2869.1prot_L-elsbetiae_contig13790.2869.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13790 4198..4380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13790.2869.1

>prot_L-elsbetiae_contig13790.2869.1 ID=prot_L-elsbetiae_contig13790.2869.1|Name=mRNA_L-elsbetiae_contig13790.2869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
RYVAVSKVLETRRGRCGEYSVLAMRLLEALGYSCRWVVDWSDHVWVEARV
GGKWVHVDPCE
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mRNA from alignment at L-elsbetiae_contig13790:4198..4380+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13790.2869.1 ID=mRNA_L-elsbetiae_contig13790.2869.1|Name=mRNA_L-elsbetiae_contig13790.2869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig13790:4198..4380+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTACGTCGCCGTGTCGAAGGTGCTGGAGACCCGGCGGGGCCGCTGCGG
CGAGTACAGCGTGCTCGCGATGCGCCTGCTCGAGGCGCTGGGGTACTCGT
GCCGCTGGGTCGTGGACTGGTCGGACCACGTCTGGGTGGAGGCGAGGGTT
GGCGGGAAGTGGGTGCATGTCGACCCTTGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13790:4198..4380+

>mRNA_L-elsbetiae_contig13790.2869.1 ID=mRNA_L-elsbetiae_contig13790.2869.1|Name=mRNA_L-elsbetiae_contig13790.2869.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig13790:4198..4380+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTACGTCGCCGTGTCGAAGGTGCTGGAGACCCGGCGGGGCCGCTGCGG
CGAGTACAGCGTGCTCGCGATGCGCCTGCTCGAGGCGCTGGGGTACTCGT
GCCGCTGGGTCGTGGACTGGTCGGACCACGTCTGGGTGGAGGCGAGGGTT
GGCGGGAAGTGGGTGCATGTCGACCCTTGCGAGAGGTACGTCGCCGTGTC
GAAGGTGCTGGAGACCCGGCGGGGCCGCTGCGGCGAGTACAGCGTGCTCG
CGATGCGCCTGCTCGAGGCGCTGGGGTACTCGTGCCGCTGGGTCGTGGAC
TGGTCGGACCACGTCTGGGTGGAGGCGAGGGTTGGCGGGAAGTGGGTGCA
TGTCGACCCTTGCGAG
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