mRNA_L-elsbetiae_contig13778.2862.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13778.2862.1
Unique NamemRNA_L-elsbetiae_contig13778.2862.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13778.2862.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13778contigL-elsbetiae_contig13778:1858..2187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.5403235-CDS-L-elsbetiae_contig13778:1857..21871622815538.5403235-CDS-L-elsbetiae_contig13778:1857..2187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13778 1858..2187 +
1691682947.5691664-CDS-L-elsbetiae_contig13778:1857..21871691682947.5691664-CDS-L-elsbetiae_contig13778:1857..2187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13778 1858..2187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13778.2862.1prot_L-elsbetiae_contig13778.2862.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13778 1858..2187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13778.2862.1

>prot_L-elsbetiae_contig13778.2862.1 ID=prot_L-elsbetiae_contig13778.2862.1|Name=mRNA_L-elsbetiae_contig13778.2862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
AAATRRSRGPGRAGQPDDDRDSQACRADGEGQGGQGRVPAAAAAAAAAAT
PPPPAAATRGRKVAAAAAGGGGKQSDEERRVRGGEHQAVPRGGSVGGGRG
GEGSERRQGC
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mRNA from alignment at L-elsbetiae_contig13778:1858..2187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13778.2862.1 ID=mRNA_L-elsbetiae_contig13778.2862.1|Name=mRNA_L-elsbetiae_contig13778.2862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig13778:1858..2187+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCAGCAACGCGGAGGAGCCGAGGACCAGGGCGAGCGGGACAGCCAGA
CGACGACCGTGACAGCCAAGCTTGCAGGGCAGACGGAGAGGGCCAGGGAG
GCCAAGGACGTGTACCAGCAGCAGCAGCGGCTGCGGCGGCAGCAGCAACA
CCACCACCACCAGCAGCAGCAACCCGCGGCCGCAAAGTTGCAGCAGCTGC
AGCGGGCGGCGGCGGCAAACAAAGCGACGAAGAGAGGCGCGTCAGGGGAG
GGGAGCACCAGGCTGTCCCCCGTGGTGGCTCGGTGGGCGGCGGACGCGGC
GGTGAGGGCTCAGAAAGACGCCAAGGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13778:1858..2187+

>mRNA_L-elsbetiae_contig13778.2862.1 ID=mRNA_L-elsbetiae_contig13778.2862.1|Name=mRNA_L-elsbetiae_contig13778.2862.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig13778:1858..2187+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCAGCAACGCGGAGGAGCCGAGGACCAGGGCGAGCGGGACAGCCAGA
CGACGACCGTGACAGCCAAGCTTGCAGGGCAGACGGAGAGGGCCAGGGAG
GCCAAGGACGTGTACCAGCAGCAGCAGCGGCTGCGGCGGCAGCAGCAACA
CCACCACCACCAGCAGCAGCAACCCGCGGCCGCAAAGTTGCAGCAGCTGC
AGCGGGCGGCGGCGGCAAACAAAGCGACGAAGAGAGGCGCGTCAGGGGAG
GGGAGCACCAGGCTGTCCCCCGTGGTGGCTCGGTGGGCGGCGGACGCGGC
GGTGAGGGCTCAGAAAGACGCCAAGGCTGCGCGGCAGCAACGCGGAGGAG
CCGAGGACCAGGGCGAGCGGGACAGCCAGACGACGACCGTGACAGCCAAG
CTTGCAGGGCAGACGGAGAGGGCCAGGGAGGCCAAGGACGTGTACCAGCA
GCAGCAGCGGCTGCGGCGGCAGCAGCAACACCACCACCACCAGCAGCAGC
AACCCGCGGCCGCAAAGTTGCAGCAGCTGCAGCGGGCGGCGGCGGCAAAC
AAAGCGACGAAGAGAGGCGCGTCAGGGGAGGGGAGCACCAGGCTGTCCCC
CGTGGTGGCTCGGTGGGCGGCGGACGCGGCGGTGAGGGCTCAGAAAGACG
CCAAGGCTGC
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