mRNA_L-elsbetiae_contig10239.286.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10239.286.1
Unique NamemRNA_L-elsbetiae_contig10239.286.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10239.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10239contigL-elsbetiae_contig10239:977..2231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size434
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815254.0666854-CDS-L-elsbetiae_contig10239:976..11981622815254.0666854-CDS-L-elsbetiae_contig10239:976..1198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10239 977..1198 +
1691682798.2277777-CDS-L-elsbetiae_contig10239:976..11981691682798.2277777-CDS-L-elsbetiae_contig10239:976..1198Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10239 977..1198 +
1622815254.079801-CDS-L-elsbetiae_contig10239:2020..22301622815254.079801-CDS-L-elsbetiae_contig10239:2020..2230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10239 2021..2230 +
1691682798.238035-CDS-L-elsbetiae_contig10239:2020..22301691682798.238035-CDS-L-elsbetiae_contig10239:2020..2230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10239 2021..2230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10239.286.1prot_L-elsbetiae_contig10239.286.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10239 977..2230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10239.286.1

>prot_L-elsbetiae_contig10239.286.1 ID=prot_L-elsbetiae_contig10239.286.1|Name=mRNA_L-elsbetiae_contig10239.286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
KQASGPPRTVSPASLAASWRREAAGRPFVCTLCRRVAGSVVDRGPVFGRA
GGLLRARLKEAAPCRRRRWRSIKQGAAARKRAKLPPSLLRLRAPFPPPPG
RPGGGTSRSTGRRTASSTAWGARWPSTPRRSPPWPCLASCCAVR
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mRNA from alignment at L-elsbetiae_contig10239:977..2231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10239.286.1 ID=mRNA_L-elsbetiae_contig10239.286.1|Name=mRNA_L-elsbetiae_contig10239.286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1255bp|location=Sequence derived from alignment at L-elsbetiae_contig10239:977..2231+ (Laminarionema elsbetiae ELsaHSoW15)
AAGCAGGCATCAGGCCCCCCTCGCACCGTATCCCCGGCTTCTTTGGCTGC
CTCGTGGCGGCGTGAAGCAGCCGGGCGGCCCTTCGTTTGCACCTTGTGCC
GCCGGGTGGCTGGGTCGGTTGTTGATCGCGGGCCGGTTTTTGGGCGGGCG
GGCGGATTGCTGCGCGCGCGCTTAAAAGAGGCTGCACCATGTCGGCGGCG
GCGATGGAGGTCGATCAAACAAGTGAGAGAAGTGTTGCTCTCTCGTGGAG
GTGCACGCAAGATATACGAAATGGGTTTGAATGGATGTACATACTTTAGG
CAACAACGCATTCCAGTCTGAAACCCAGGCATGGGTTTGTGGCCAAACGC
GAGAACTGAACCGGCGGCCGAGGACGCATCTCAACGTTTTCGACACGGCG
GTACCTGCTGTTCATGGGTTGTGGAGGAGGGAAAGATGTTCTCCAGGATC
ACCGCAGTGCCAGTTCGTCCCACATCAGTTTTGGATTGTTTCTACATAGG
ATCCTTACCTTCGTGTCTTGCGTTTTGTTTTGCTTCTTCCTCGGCCCTGC
GCCATTTCCTTTGATTCATCTCCCTAAACCTCCGGTTCGGTCGAGCGTGA
GCAACCATCGTCTGATCCACGCACGACCAGTAGATTCACGTGGTGGGACT
GTTATATTCGGTCGGGAGGGGGAAAGCTGCGCGTTTTCCGGGGCCCTCAG
GCGGAACATGTTGATGGCTTGGGCTCAAATCCCCGCCAGCCCTTTGTTTT
GGTCGCTATTTGCCTTGTGAGACGACCCACTAAAGAAGGCACCCTGCACT
AAGTAGGATAGCAGTGCCGAGGATATAATGTCTTTGCGGGAGAACCGCGA
AGTGCCGTTCCCACGACACCGAAACCGGTGCACCTCGTTCTCTGCGATGC
TCAGCAAAACACACCTCCCCTGTGTCTAACTAACTACAAACCTCTGTTTA
ATCTCGCGCATTGCCCCCGTTCCCTCTGTACGGCCTTTGTTTCCCCCCTC
CTCTGCTTTTTTTTACCCAACGAAACTTTTTAACTTTCGCGCAGGGGGCG
GCGGCAAGAAAGAGGGCAAAGTTGCCCCCATCCCTTCTCCGTCTGCGTGC
TCCCTTCCCTCCGCCACCCGGCCGTCCCGGCGGTGGCACGTCGAGATCAA
CCGGGCGGCGGACGGCTTCTTCTACCGCCTGGGGCGCCAGGTGGCCCTCA
ACCCCAAGAAGGTCGCCGCCCTGGCCCTGCTTGGCGTCTTGCTGTGCTGT
TCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10239:977..2231+

>mRNA_L-elsbetiae_contig10239.286.1 ID=mRNA_L-elsbetiae_contig10239.286.1|Name=mRNA_L-elsbetiae_contig10239.286.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig10239:977..2231+ (Laminarionema elsbetiae ELsaHSoW15)
AAGCAGGCATCAGGCCCCCCTCGCACCGTATCCCCGGCTTCTTTGGCTGC
CTCGTGGCGGCGTGAAGCAGCCGGGCGGCCCTTCGTTTGCACCTTGTGCC
GCCGGGTGGCTGGGTCGGTTGTTGATCGCGGGCCGGTTTTTGGGCGGGCG
GGCGGATTGCTGCGCGCGCGCTTAAAAGAGGCTGCACCATGTCGGCGGCG
GCGATGGAGGTCGATCAAACAAAAGCAGGCATCAGGCCCCCCTCGCACCG
TATCCCCGGCTTCTTTGGCTGCCTCGTGGCGGCGTGAAGCAGCCGGGCGG
CCCTTCGTTTGCACCTTGTGCCGCCGGGTGGCTGGGTCGGTTGTTGATCG
CGGGCCGGTTTTTGGGCGGGCGGGCGGATTGCTGCGCGCGCGCTTAAAAG
AGGCTGCACCATGTCGGCGGCGGCGATGGAGGTCGATCAAACAAGGGGCG
GCGGCAAGAAAGAGGGCAAAGTTGCCCCCATCCCTTCTCCGTCTGCGTGC
TCCCTTCCCTCCGCCACCCGGCCGTCCCGGCGGTGGCACGTCGAGATCAA
CCGGGCGGCGGACGGCTTCTTCTACCGCCTGGGGCGCCAGGTGGCCCTCA
ACCCCAAGAAGGTCGCCGCCCTGGCCCTGCTTGGCGTCTTGCTGTGCTGT
TCGGGGGGCGGCGGCAAGAAAGAGGGCAAAGTTGCCCCCATCCCTTCTCC
GTCTGCGTGCTCCCTTCCCTCCGCCACCCGGCCGTCCCGGCGGTGGCACG
TCGAGATCAACCGGGCGGCGGACGGCTTCTTCTACCGCCTGGGGCGCCAG
GTGGCCCTCAACCCCAAGAAGGTCGCCGCCCTGGCCCTGCTTGGCGTCTT
GCTGTGCTGTTCGG
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