mRNA_L-elsbetiae_contig1377.2859.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1377.2859.1 vs. uniprot
Match: D8LDS9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS9_ECTSI) HSP 1 Score: 751 bits (1939), Expect = 1.360e-253 Identity = 468/868 (53.92%), Postives = 538/868 (61.98%), Query Frame = 1 Query: 1 MSRGNRAGRKSDAGSATDAATAYRHALQLCGEGTYGKALTLFNRAITFRVDCSHYFAARANCKQQAMGQYTDAYHDYVSAIRLNHRKCTYFSCRALCLIKMGKLDAALLDFSKACELEPTVAVYHYQKASLLHHRLARPGEAILPYAECLAKAGPGDTAMVLRCLQAKGACLFEEGRAAEAVADLSRAVEMSDASPASLHYLAKALKAMGREKRALAVLEEAIDKWEDTPRAAAKGG--------RHEAFFDRGVIRLQRGDDAGALSDFDQAVLLSGGAKGGYFVQRARARARVAMRSNSREEAMAGVQDIEKAMELESSNPEFLFTAGVLCSRMGEYERALGHLRLLLEFFEEKAAASREHKGRGRKEAVTSRAACEFEDFTASIAVHRRRPEGYLLRGRSLAGLSDHERAIKDFTTALALLGSENIENG-----LGEEGSRFREGSSAAWLQG--GEEKEXXXXXXXXXXXXXXXXXXTDDSSNANRGARQERCVPRVSNASDGYKGRENQPCFGEPGQKEESHGEERGGSKPNRSDSSSRRRSQGADGEDGMSEGGSVIGACHYARALSLQQLGRHADAASDFDAAIAEGPVSWQRLWHRAICLAELGEAFQLSAVMDLQACVSMAEKEEPPPEVRKLNFLFQVGLAYYRLGQSSTALGCFDRSRKEVLRRQLLQHDSSTEDPSLHYHRGLCLMKADELEEAEDAFSLAIECRKRRVRGKAPSTADGTDTRMQAAHHRERGRVRQLLRDFDGARADFTACLSRSRQQQQQTPATARGSSPSGGATGGCAPGSSSHDARTLFLRGWANKALRCLDQAAADFEAARRLEPLHPHLSVDYRNIFDTELVVVDDMEPLAQAPALFHSW 2559 M +G + K++ ATDAATAY L+LCGEG YGKAL F+RAI FRVDCSHYFAARANCKQ AMG++ DAYHDYVSAIRLN KCT CELEPTVAV+HYQ+ASLLHHRLARPG+A++ Y ECLA G D+AM LRCL AKGACLFEEGRA EAVADLSRAVEMSD SPASL YLAKALKA+G+EKRAL VL EA+ KWE AA GG RHEAFFDRGVIRL GDDAGAL DF++AV LS G +G YFVQRARARARVAMRS REEAMAGV+DIEKAMELES+NPEFLFTAGVLCSRMGEYERA+GHL+LLL F+++ AAS K + V SRAACEFE+FTASIAV+ +RPEG+LLRGRSLAGLS HE+AI+DFTTAL++LGS++ + LG R+ S + G+EKE T+ + E C PRV G E P + ESHG+E G ++S RR S+ + DGM EGGSV+GACHYARALSLQQLGRHADA +DFD AI+EGPVSWQR WHRA CL LGEA++ SAV DL+AC+SMAEK EPPPE+R NFLFQVGLAY RLG+ + AL FD++ KE +R Q D+ TE P TD SS A TLF RGWANKA+ L++AAADFEAAR L +PHLSV+YRN FDTELVVVDD +P Q PALFHSW Sbjct: 1 MGKGKQGASKTEGVCATDAATAYNQGLKLCGEGAYGKALCSFDRAIAFRVDCSHYFAARANCKQ-AMGKFVDAYHDYVSAIRLNASKCTXXXXXXXXXXXXXXXXXXXXXXXXXCELEPTVAVHHYQRASLLHHRLARPGQAVISYGECLANTGEFDSAMTLRCLHAKGACLFEEGRAEEAVADLSRAVEMSDPSPASLQYLAKALKAVGQEKRALTVLGEALKKWEHMAPAAQLGGGPSSDNTGRHEAFFDRGVIRLGHGDDAGALLDFNKAVELSNGGRGEYFVQRARARARVAMRSEGREEAMAGVEDIEKAMELESNNPEFLFTAGVLCSRMGEYERAMGHLQLLLRSFDKQEAASTREKTETGNKDVASRAACEFENFTASIAVNGQRPEGFLLRGRSLAGLSSHEQAIRDFTTALSILGSKSARSSRTTSLLGGADGCCRDDSVSQRKDEAKGDEKEVDARNAKPEQDGDTKGNRTNPEVMLS-----ETCSPRVEYNRAGTDPHEASPA---ETKHPESHGDE--GHLEESREASCRRDSRSGEVGDGMGEGGSVVGACHYARALSLQQLGRHADAVTDFDVAISEGPVSWQRFWHRATCLVGLGEAYRASAVRDLRACMSMAEKGEPPPEMR--NFLFQVGLAYLRLGRFALALELFDQAWKEEVRLPE-QRDTKTEGP--------------------------------------------TDL-------------------------------------------------------------GSSLQAHTLFRRGWANKAMGNLEEAAADFEAARLL---NPHLSVNYRNAFDTELVVVDDGKPFTQPPALFHSW 746
BLAST of mRNA_L-elsbetiae_contig1377.2859.1 vs. uniprot
Match: A0A2D4C8C9_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8C9_PYTIN) HSP 1 Score: 74.3 bits (181), Expect = 1.340e-9 Identity = 78/286 (27.27%), Postives = 124/286 (43.36%), Query Frame = 1 Query: 1660 ARALSLQQLGRHADAASDFDAAIAEGPVSWQRLWHRAICLAELGEAFQLSAVMDLQACVSMAEKEEPPPEVRKLNFLFQVGLAYYRLGQSSTALGCFDRSRKEVLRRQLLQHDSSTEDPSLHYHRGLCLMKADELEEAEDAFSLAIECRKRRVRGKAPSTADGTDTRMQAAHHRERGRVRQLLRDFDGARADFTACLSRSRQQQQQTPATARGSSPSGGATGGCAPGSSSHDARTLFLRGWANKALRCLDQAAADFEAARRLEPLHPHLSVDYRNIFDTELVVVDD 2517 ARA++ + LGR A D +A P + +HR +CL L + A V++ E + P+ + L+ +GL Y+R S+ + + + R +++ +HYH GL + A F+ A+E R P +DG T ++ H ER + QL R + A DFTA + R+ ++A F RG+A KAL L AA+DFE A+ L+P +P L+V Y+ + DTE V++ D Sbjct: 542 ARAMAHRGLGRLELAVEDLTICLALDPENDVFQYHRGLCL--------LESRRPEDALVNLHEAQRANPQ--DAHVLYLLGLCYFRARDPSSCVKYMTAALQSQPRAEIVA--------DIHYHIGLSHAIEGDNAGAIPHFTSALEHAGR------PDVSDGHAT-LRFLH--ERAKALQLERRYHDAIEDFTAVIRRN-----------------------------PNNAHAYFRRGFAWKALGELSAAASDFEKAKLLDPSNPKLAVKYKELRDTECVILCD 771
BLAST of mRNA_L-elsbetiae_contig1377.2859.1 vs. uniprot
Match: A0A5D6XF25_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XF25_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 4.200e-5 Identity = 62/208 (29.81%), Postives = 95/208 (45.67%), Query Frame = 1 Query: 1909 YYRLGQSSTALGCFDRSRKEVLRRQLLQHDSSTED-PSLHYHRGL-CLMKADELEEAEDAFSLAIECRKRRVRGKAPSTADGTDTRM-----QAAHHRERGRVRQLLRDFDGARADFTACLSRSRQQQQQTPATARGSSPSGGATGGCAPGSSSHDARTLFLRGWANKALRCLDQAAADFEAARRLEPLHPHLSVDYRNIFDTELVVV 2511 YY G++S SRK + R+ L+H + E P + YH GL C +++ + A ++F+ A+E +A S A R Q + ER + QL R +D A ADF+ L+ + ++A F RG+A+KA L AAADFEAA+ L+P + L V+Y + DTE V++ Sbjct: 603 YYHEGETS-------ESRKFM--RRALRHKPAPETLPDVFYHIGLSCALESRHMA-AIESFTAALE------HSRALSAASSASERAALLAAQLRYVHERAKALQLERYYDEAVADFSFVLAHN-----------------------------PNNAHACFRRGFAHKARGDLAAAAADFEAAKMLDPTNLQLVVNYHELRDTECVIL 765 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1377.2859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1377.2859.1 >prot_L-elsbetiae_contig1377.2859.1 ID=prot_L-elsbetiae_contig1377.2859.1|Name=mRNA_L-elsbetiae_contig1377.2859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=854bp MSRGNRAGRKSDAGSATDAATAYRHALQLCGEGTYGKALTLFNRAITFRVback to top mRNA from alignment at L-elsbetiae_contig1377:6400..20601+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1377.2859.1 ID=mRNA_L-elsbetiae_contig1377.2859.1|Name=mRNA_L-elsbetiae_contig1377.2859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=14202bp|location=Sequence derived from alignment at L-elsbetiae_contig1377:6400..20601+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1377:6400..20601+ >mRNA_L-elsbetiae_contig1377.2859.1 ID=mRNA_L-elsbetiae_contig1377.2859.1|Name=mRNA_L-elsbetiae_contig1377.2859.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5124bp|location=Sequence derived from alignment at L-elsbetiae_contig1377:6400..20601+ (Laminarionema elsbetiae ELsaHSoW15)back to top |