mRNA_L-elsbetiae_contig1377.2860.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1377.2860.1
Unique NamemRNA_L-elsbetiae_contig1377.2860.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1377.2860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1377contigL-elsbetiae_contig1377:21501..23249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size777
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1377.2860.1prot_L-elsbetiae_contig1377.2860.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1377 21819..23222 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.129088-UTR-L-elsbetiae_contig1377:21500..218181622815538.129088-UTR-L-elsbetiae_contig1377:21500..21818Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1377 21501..21818 -
1691682947.3039472-UTR-L-elsbetiae_contig1377:21500..218181691682947.3039472-UTR-L-elsbetiae_contig1377:21500..21818Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1377 21501..21818 -
1622815538.18385-UTR-L-elsbetiae_contig1377:23222..232491622815538.18385-UTR-L-elsbetiae_contig1377:23222..23249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1377 23223..23249 -
1691682947.3430457-UTR-L-elsbetiae_contig1377:23222..232491691682947.3430457-UTR-L-elsbetiae_contig1377:23222..23249Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1377 23223..23249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.1428044-CDS-L-elsbetiae_contig1377:21818..220911622815538.1428044-CDS-L-elsbetiae_contig1377:21818..22091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1377 21819..22091 -
1691682947.3135936-CDS-L-elsbetiae_contig1377:21818..220911691682947.3135936-CDS-L-elsbetiae_contig1377:21818..22091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1377 21819..22091 -
1622815538.15535-CDS-L-elsbetiae_contig1377:22630..227651622815538.15535-CDS-L-elsbetiae_contig1377:22630..22765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1377 22631..22765 -
1691682947.3220694-CDS-L-elsbetiae_contig1377:22630..227651691682947.3220694-CDS-L-elsbetiae_contig1377:22630..22765Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1377 22631..22765 -
1622815538.1697161-CDS-L-elsbetiae_contig1377:23198..232221622815538.1697161-CDS-L-elsbetiae_contig1377:23198..23222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1377 23199..23222 -
1691682947.3314898-CDS-L-elsbetiae_contig1377:23198..232221691682947.3314898-CDS-L-elsbetiae_contig1377:23198..23222Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1377 23199..23222 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1377.2860.1

>prot_L-elsbetiae_contig1377.2860.1 ID=prot_L-elsbetiae_contig1377.2860.1|Name=mRNA_L-elsbetiae_contig1377.2860.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MGEKAWSTKYPSVGLEVCPEIPSTNKRDERWGVALLEEIANFVTTVPDAK
GFEDITFKGYSPRAFDYWRKHILVNVEARLARDPDYVSDASLWVYPGSYR
TIYKWVESQKQQYSDAHNTHHTSGSEANPYVPATALQKAQDKV*
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mRNA from alignment at L-elsbetiae_contig1377:21501..23249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1377.2860.1 ID=mRNA_L-elsbetiae_contig1377.2860.1|Name=mRNA_L-elsbetiae_contig1377.2860.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1749bp|location=Sequence derived from alignment at L-elsbetiae_contig1377:21501..23249- (Laminarionema elsbetiae ELsaHSoW15)
GCCACGAAGATCGCGTCCAAGAAGCGCATGGGGGAAAAGGCATGGTCCAC
GGTGAGTCCGCGAAATAGAGAGTTCGATACTCGTGGGTTTTTCCATCCCT
TCCCGCGACTGCCGGTGGTCCGTCTGCTAGTGGTGGTAGGTCTGCTAGTT
TTCGGTCTGGTGGCGTATCTGTGGTGGGACCACCCCAGAGGGTTGTCGAC
CTTTGTGTATCGGGCGATACCAACGGACGGTTAGCCCCCCTCCTCCCTTC
ATGCTTCTTGGAAGTCGCTCAACGTAGGGTTAGGTTATGACGCGGAGGCA
TGTCGGAGATTCTAAACGTCCCCTCGCCCCGGGTTACCCTCGTATGGTGT
TTGCGCTACTCCGCAGCGCCAGATTTCCAATCACCCGGCGGCCGTAGTCG
GGCCCGCGCAAGGTATTCGCTTGTGTCGTGTTACCGTTCTTCCGTCTCAG
CTTATTTTTCCCTCCCTTTTCTGTGCGCCGACAGAAATATCCATCGGTCG
GTCTTGAAGTGTGCCCGGAGATACCGAGCACAAACAAGCGGGACGAGAGG
TGGGGTGTGGCGCTCTTGGAAGAGATTGCCAACTTCGTCACAACAGTGCC
CGACGCGAAGGGATTCGAGGTGCGTCTGCGAACAGCTAGGTTTCGTATTG
ACCCGCCCCCCCTCTAAACTCTTCGCTCGTCGGGGCTTATCCAGCGAAGT
AGCGCTTCATGTCAGTCACGGGCGTGCCTGTCACATGATTGTTTTCACCA
ACTATGAAGGCTCTTGTTCGGAAGTTAACTCACACCCAACGTACGCACAC
AAACTCCGTCGATAGCCGCTTTGGATAGAAGTATGCCCATCCTCCATCCT
GGTCACCTACACCTTTGTCGAGTGCAGCGCGTGGTTACCACCACCGCCTC
ACGTTGCTGAGCCCCTTCGTTGGAGTGTACTTGTTATGGCCACCACCGTG
CGCTTATCGGGTAACGTTTCAGGGTTAGGTGAAGATGTGGTCGAGTTGTG
GTATGTTGTCTCGCGGTTACCTTTCGATCAAATTTTGGGGCGGCGTATCG
CTGAACGCTTAGTCCACTGTATTTTGGTCTTAGCCAGTGCGTTGTTTTAA
TTATTTATTTCTTCGTGTGCCCCCGCGCCCTGCGCCTCCCTTGCCCTCCC
CGCATCAGGACATCACCTTCAAGGGGTACTCCCCCCGGGCCTTCGACTAC
TGGCGCAAGCACATCCTCGTCAACGTCGAGGCAAGGCTCGCCCGCGACCC
GGACTACGTAAGCGACGCGTCGCTCTGGGTCTACCCAGGGAGCTACCGCA
CCATCTACAAGTGGGTAGAGAGCCAGAAGCAGCAGTACTCCGACGCACAC
AACACCCACCACACCTCCGGTTCGGAAGCAAACCCGTACGTCCCTGCAAC
GGCCCTTCAGAAAGCCCAGGACAAGGTGTGATGTAACTTCCCGGTTACCT
GCATCGAGTCCTCCACTGCGGCCCAGAATACCTGGGCCGAGACGTCGAGT
AGGCCCCAGGAGCACTCCCCGTTCAGTGAGACGGCCAACCGCAACAGCGA
TGGGCGTGACATGTTCGGTGGGGGTGTCACCAAACTCTTCGGGGGTGGGG
CGGGCACCACGGACGACCGGAGCGACGCGGGCTCCACCAACTCGCAGGAT
GTGCAGGCCGAGTCAGACGACATCACCGACGACGACGCCGAGGCTGGCTT
CTCCCAGAACAGTCAGCCAATCGCCACCGGGAGCGGAGGTGGCGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1377:21501..23249-

>mRNA_L-elsbetiae_contig1377.2860.1 ID=mRNA_L-elsbetiae_contig1377.2860.1|Name=mRNA_L-elsbetiae_contig1377.2860.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig1377:21501..23249- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGAAAAGGCATGGTCCACGATGGGGGAAAAGGCATGGTCCACGAA
ATATCCATCGGTCGGTCTTGAAGTGTGCCCGGAGATACCGAGCACAAACA
AGCGGGACGAGAGGTGGGGTGTGGCGCTCTTGGAAGAGATTGCCAACTTC
GTCACAACAGTGCCCGACGCGAAGGGATTCGAGAAATATCCATCGGTCGG
TCTTGAAGTGTGCCCGGAGATACCGAGCACAAACAAGCGGGACGAGAGGT
GGGGTGTGGCGCTCTTGGAAGAGATTGCCAACTTCGTCACAACAGTGCCC
GACGCGAAGGGATTCGAGGACATCACCTTCAAGGGGTACTCCCCCCGGGC
CTTCGACTACTGGCGCAAGCACATCCTCGTCAACGTCGAGGCAAGGCTCG
CCCGCGACCCGGACTACGTAAGCGACGCGTCGCTCTGGGTCTACCCAGGG
AGCTACCGCACCATCTACAAGTGGGTAGAGAGCCAGAAGCAGCAGTACTC
CGACGCACACAACACCCACCACACCTCCGGTTCGGAAGCAAACCCGTACG
TCCCTGCAACGGCCCTTCAGAAAGCCCAGGACAAGGTGTGAGACATCACC
TTCAAGGGGTACTCCCCCCGGGCCTTCGACTACTGGCGCAAGCACATCCT
CGTCAACGTCGAGGCAAGGCTCGCCCGCGACCCGGACTACGTAAGCGACG
CGTCGCTCTGGGTCTACCCAGGGAGCTACCGCACCATCTACAAGTGGGTA
GAGAGCCAGAAGCAGCAGTACTCCGACGCACACAACACCCACCACACCTC
CGGTTCGGAAGCAAACCCGTACGTCCCTGCAACGGCCCTTCAGAAAGCCC
AGGACAAGGTGTGA
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