mRNA_L-elsbetiae_contig1367.2792.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1367.2792.1
Unique NamemRNA_L-elsbetiae_contig1367.2792.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1367.2792.1 vs. uniprot
Match: D7FTX7_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX7_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 4.680e-66
Identity = 230/410 (56.10%), Postives = 267/410 (65.12%), Query Frame = 2
Query:  398 MGAVLAGTCGPRNREDQVFRAAEC------EPLPDLDAWVNHSTTPDLPAIVADMHRNSSRESWLKFLGSGLLEASSDGNLLAVKQLLAGGAPRHARDAEGRTPLHRASIAGHAHVVGFLLHEEGDXXXXXXXXXXXXXXXX----PRLVWQASKEGPVLVPSVSLQKRVTVDARDDLRSCPAHLAAARGHAHVVRLLVQHGADVSSVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEATTTISGXXXXXXXXXXXXXXXXXXXXXXXXS-EMAVDTDERTPRAMVGERVSDEERVVDPGCSEREERIHRLLDDAPKDRLWRRRXXXPLXXXXXXXPAYDDS-----ALDDGLDRPLAGVLAGLQEGIVRIIVSYL 1579
            MGA L G+CG R +E      +EC      E  P+LDAW++HST P L +IV + ++ SSRE W KFLG+GLL+A+SDGNL  V+QLLA GAP HARD EG TPLHRAS+AGHA V   LL   GD                    P L WQAS EGPVLVPSVSL KR T+DARD   SCP HLAAA GHA VV++L+QHGADVS  N                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXX+ E AVD D+ TP  MV ER+++E++  DP  +   E I R+L DAP+DRLWRRR   PL       PA+D        +D G  + +  ++   +EGI+R IVSYL
Sbjct:    1 MGAALGGSCGGRTKE---VAGSECDGPPPGEQPPELDAWIDHSTWPGLRSIVTEAYQISSRERWSKFLGAGLLDAASDGNLAGVRQLLAAGAPLHARDLEGHTPLHRASVAGHAGVAEQLL-SSGDGRAPPLGGASPSSSGMVPEPPSLKWQASMEGPVLVPSVSLVKRTTLDARDHSGSCPIHLAAACGHADVVQVLLQHGADVSGSNGVAQSPLHTAAAGLDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADERAVDIDDLTPENMVCERMTEEQKAADPTIAPVGETICRMLADAPQDRLWRRRRLLPLLHWRQPPPAFDTGPGTAVTVDAGSGQSIFELVVCEEEGIMRNIVSYL 406          
BLAST of mRNA_L-elsbetiae_contig1367.2792.1 vs. uniprot
Match: A0A813LKL6_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LKL6_POLGL)

HSP 1 Score: 60.8 bits (146), Expect = 3.410e-6
Identity = 46/129 (35.66%), Postives = 60/129 (46.51%), Query Frame = 2
Query:  593 LLEASSDGNLLAVKQLLAGGAPRHARDAEGRTPLHRASIAGHAHVVGFLLHEEGDXXXXXXXXXXXXXXXXPRLVWQASKEGPVLVPSVSLQKRVTVDARDDLRSCPAHLAAARGHAHVVRLLVQHGAD 979
            L +AS  G+   V++LL+  A  +  D +GR PLH A+ AG   V+  LL    D                    WQ   E   L+    L  R  V+A D+    P   AA++GHA VVRLLVQ GAD
Sbjct:   59 LTDASMSGDQARVQELLSENADPNMSDEQGRLPLHAATFAGATAVLSSLLDARADANLREQGDGNRSLQIA---AWQGHLEATELL----LDNRADVEAVDERGWSPLCSAASQGHASVVRLLVQKGAD 180          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1367.2792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTX7_ECTSI4.680e-6656.10Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTX7... [more]
A0A813LKL6_POLGL3.410e-635.66Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1367contigL-elsbetiae_contig1367:21333..24691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score239.2
Seed ortholog evalue3.3e-60
Seed eggNOG ortholog2880.D7FTX7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2651
Cds size1185
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1367.2792.1prot_L-elsbetiae_contig1367.2792.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1367 22846..24294 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.883269-UTR-L-elsbetiae_contig1367:21332..223851622815531.883269-UTR-L-elsbetiae_contig1367:21332..22385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1367 21333..22385 -
1691682944.0390773-UTR-L-elsbetiae_contig1367:21332..223851691682944.0390773-UTR-L-elsbetiae_contig1367:21332..22385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1367 21333..22385 -
1622815531.8934398-UTR-L-elsbetiae_contig1367:22829..228451622815531.8934398-UTR-L-elsbetiae_contig1367:22829..22845Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1367 22830..22845 -
1691682944.0490046-UTR-L-elsbetiae_contig1367:22829..228451691682944.0490046-UTR-L-elsbetiae_contig1367:22829..22845Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1367 22830..22845 -
1622815531.9312563-UTR-L-elsbetiae_contig1367:24294..246911622815531.9312563-UTR-L-elsbetiae_contig1367:24294..24691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1367 24295..24691 -
1691682944.0842898-UTR-L-elsbetiae_contig1367:24294..246911691682944.0842898-UTR-L-elsbetiae_contig1367:24294..24691Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1367 24295..24691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.903477-CDS-L-elsbetiae_contig1367:22845..239851622815531.903477-CDS-L-elsbetiae_contig1367:22845..23985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1367 22846..23985 -
1691682944.0597577-CDS-L-elsbetiae_contig1367:22845..239851691682944.0597577-CDS-L-elsbetiae_contig1367:22845..23985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1367 22846..23985 -
1622815531.9150832-CDS-L-elsbetiae_contig1367:24249..242941622815531.9150832-CDS-L-elsbetiae_contig1367:24249..24294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1367 24250..24294 -
1691682944.0736086-CDS-L-elsbetiae_contig1367:24249..242941691682944.0736086-CDS-L-elsbetiae_contig1367:24249..24294Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1367 24250..24294 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1367.2792.1

>prot_L-elsbetiae_contig1367.2792.1 ID=prot_L-elsbetiae_contig1367.2792.1|Name=mRNA_L-elsbetiae_contig1367.2792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=395bp
MGAVLAGTCGPRNREDQVFRAAECEPLPDLDAWVNHSTTPDLPAIVADMH
RNSSRESWLKFLGSGLLEASSDGNLLAVKQLLAGGAPRHARDAEGRTPLH
RASIAGHAHVVGFLLHEEGDDESPPPGASPAGVPPPPRLVWQASKEGPVL
VPSVSLQKRVTVDARDDLRSCPAHLAAARGHAHVVRLLVQHGADVSSVNG
LLQTPLHAAAAGGSSESMHVLLGAGGDVMARDNAGRAPLHVAASLGHPSA
VSTLVEGGADTEATTTISGRTALHEACASLRPETVKQLLDRGASEMAVDT
DERTPRAMVGERVSDEERVVDPGCSEREERIHRLLDDAPKDRLWRRRRLL
PLLLRRQPPPAYDDSALDDGLDRPLAGVLAGLQEGIVRIIVSYL*
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mRNA from alignment at L-elsbetiae_contig1367:21333..24691-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1367.2792.1 ID=mRNA_L-elsbetiae_contig1367.2792.1|Name=mRNA_L-elsbetiae_contig1367.2792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3359bp|location=Sequence derived from alignment at L-elsbetiae_contig1367:21333..24691- (Laminarionema elsbetiae ELsaHSoW15)
GCTGCTGCTGCTGCATCGTTTCTGCCGCTCTCTGCGTCGTCGGCCTTGCG CCAGGCCTCATAGTAAACCGCTGCCGTCGTTTGAACTCGAGCTGAATATA TGTAGCCGGCGGCTTGCAAAAGGAGGGTATCACGGGCAACGCCCCTGCTG CAAAATGGATGCTGCTTGGAAATGAACCTACCACTGCTACCGTCAGGTAG GCCGCTACTGCCATCGCCGCGAAGAGCAGCCCTGTTGTCTCTGTCCGTCC GGGGGCTACGCGCACGTACCAAGGCCAAACCAATCACGGAGGGCGGTTTT TGGTTCCAGAATTCACGAGACCCCCGGGACAGCTGCGGAGTTTTAGGAGT TTTTGTCTGTCCATGTGCGCCACGCTCTCCCTAGTGCCGGGAAGTTAATG GGGGCAGTGCTAGCTGGAACATGTGGGCCAAGGAATAGAGAGGTGCGTGC GTTGCTTGAAAGGGGCACGCGCCAGAAAAAGAGAGTGCAGTGTGCAGTAG CAGCATGTAGTCTACATCACTGTTGTGTGTTTCCCCTCACGCACGAGGGG CGTGCACCTGAGAACTCTGCTTTAAAACCCAGAGGGTGCTTGATCACGGC AGTGGAAGGTTCGGCCATACGATAGCGCACCACCAGTATCTTGTCCGGTG CCTGCGTGTTGTCAACTCCGCGGGTGCAACCCACCGCTCCTTTCATCACT CCGCAGGACCAGGTTTTCCGGGCCGCCGAGTGCGAACCGCTGCCGGATTT GGATGCATGGGTCAACCACAGCACCACGCCGGACCTTCCCGCCATCGTGG CCGACATGCACCGGAACTCCAGCCGCGAGAGCTGGTTGAAGTTCCTTGGG TCAGGCCTGCTAGAGGCGTCATCAGACGGCAACCTTTTGGCCGTCAAGCA GCTCCTCGCCGGCGGAGCGCCCCGCCACGCCCGTGACGCGGAAGGACGCA CCCCTCTGCACCGCGCTTCGATCGCGGGGCACGCGCACGTAGTTGGGTTT CTTCTCCACGAAGAGGGAGACGACGAATCGCCCCCTCCCGGCGCGAGCCC TGCTGGCGTGCCCCCCCCGCCGCGGCTCGTGTGGCAGGCCAGCAAAGAAG GCCCGGTCCTGGTGCCCTCCGTGTCTCTCCAGAAGCGGGTCACGGTGGAT GCCAGGGACGACTTGCGCTCCTGCCCAGCGCACCTGGCCGCGGCGCGCGG GCACGCGCACGTAGTGCGGCTGCTGGTCCAGCACGGCGCCGACGTCTCCA GCGTGAACGGCCTGCTGCAGACGCCCCTCCACGCCGCGGCCGCCGGGGGC TCAAGCGAGAGCATGCACGTTTTGCTCGGCGCTGGCGGGGACGTGATGGC GAGGGACAACGCCGGCAGGGCGCCCCTGCACGTTGCGGCCTCCTTGGGGC ACCCGTCCGCGGTGTCGACCCTGGTGGAGGGCGGGGCAGATACGGAGGCC ACGACAACCATCAGCGGCCGGACCGCTCTGCACGAGGCCTGCGCGAGCCT GAGACCAGAAACCGTGAAGCAGCTGCTCGATCGCGGCGCGAGTGAGATGG CGGTCGACACGGACGAACGGACCCCGAGAGCCATGGTCGGAGAGAGGGTT TCAGACGAGGAGAGGGTAGTAGACCCTGGCTGCTCCGAGAGGGAGGAGCG GATCCATCGCTTGTTGGACGACGCCCCGAAAGACAGGCTGTGGCGGCGCC GGCGCCTGCTGCCGCTGCTGCTCCGGCGACAACCGCCGCCTGCGTACGAC GACTCGGCGCTGGATGACGGTTTGGATCGCCCTCTGGCGGGCGTTCTAGC AGGCCTGCAAGAGGGCATCGTGCGCATCATCGTGTCCTATTTGTGACGGA TTCCGTCCGAAGGTGGGCGAGCGGTACAAGTTGTGATGCGCTGGTTTTGG AAGAGCGGAGGGCAGAAATTACCTGAAAGTTACGTACAAGAGTGGGCGGC AGGGCAATACGTTCAGCCGTGCGCCAGGCCACGGGGGCTTGGTGCACGGT TTGGTGGTGTGTTTAGTGCTGGTTGGCTACTCAGAACGTTTGTCCGCCGT CGCCTCGCTTGAACTGCCGCATGGAAGATGCGAAGAACTTATTTCGAGGG TGTCTTTTGTCTTTTGGGGGTTCGAGTAGCCAAGCCTTGGATTGGCGACG CTCTCTTGGTTTCCTGTTCTACGCTTTACTGCGTTTGGGGGGTTATCATG GGAGACCGCACTGAAACTCTCGTCTCGTTTTGACGACAACCACCATTCCG TTCGCGATGCGTGTGATGTTCCTCTTGAAACCCTGTGTCCTCTTTTGTTC GGCCAGGAATGTGTGCCATCGCAAGCGTTGGACGGGCGTTTCATGATGTG TGGCAAGAGAGGAAACTCTGTGCTGATTATTCTCCTTCAAGTGCTGGTAT TCTGTGTGCTGGCGGCGTGTACGTCGTGGTGCAGCTGCCTGTGGCAAACG AGTGGGCCGTCCTGCGCGCGGCCCCGCACTGGTGATCGGTGCAGAACCTT CTGTATTTGACCGCGCGGTGCATTTATTTTTTCGTGCATACATACCGTAA TCATGCGGAGGTTCGCACCCCCGTGTTAGCGTTTTATTATAGCGTATTTC TCCACAACCAGAAGGGTACCGCTGCCGAAAAGGGTGGTTTTCGAAACGTC TCATCGGGGGCTTTTCAGAGAGGTATCAGTTAGTGTTCGCACCCTCCTGA TTGTTGAGAAATACGCTTTAGAAAAATGCTAACACGGGGGTGCGAACCTT CGCATGATTAAGGTACTTGGAAGTACATATGTATGGTACATGAGAAGGAG ATCCCCCCCCCCCCCCGCATAAATAATTTTTTTGTGTATGCTTTGTATTT GTATACTAAACTGGACATAATAGCAAGCTGTTCCCGCCCCCCATAAGTTC GTTTGTATATCAATATAGTTTCGTTCTGTAACATCACACATAGCTCACTA TCGTAGCTGCGCGGTCAGTGGGTGTATCAGCATGTAGTATGGGTAGCGTT GTTCGTATGTATGTATGTTCCCAATCGACGGACGTATCAGGATTGTGTAA CGAAAATGTAGTTATATAGTCTAGACTTTTAAGTTGTTTTACGGAGAGTG GAATCTAGGATCGTTGCGAATAGTGTGTGAGAGTGCGACACCTCAAATAC CTAGATTTTTTCATCTGACCTTTGACGATGCGGGGCGCTTTCTCTCAGAA ACCCCAACTTTGTGGAAAGCTCTGATTGGCTTCGGTGTGTGGTCGTGCGA CTGTGCGTCAAGTATTGTAACTGCTTGGCGCCGGGTGCGCGCTCTAAATT GTCGAGATTATTAATTTTGCTCGCTGTTGCCCGTCTTTTTTTGGTATTTT TGAAAGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1367:21333..24691-

>mRNA_L-elsbetiae_contig1367.2792.1 ID=mRNA_L-elsbetiae_contig1367.2792.1|Name=mRNA_L-elsbetiae_contig1367.2792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2370bp|location=Sequence derived from alignment at L-elsbetiae_contig1367:21333..24691- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGCAGTGCTAGCTGGAACATGTGGGCCAAGGAATAGAGAGATGGG
GGCAGTGCTAGCTGGAACATGTGGGCCAAGGAATAGAGAGGACCAGGTTT
TCCGGGCCGCCGAGTGCGAACCGCTGCCGGATTTGGATGCATGGGTCAAC
CACAGCACCACGCCGGACCTTCCCGCCATCGTGGCCGACATGCACCGGAA
CTCCAGCCGCGAGAGCTGGTTGAAGTTCCTTGGGTCAGGCCTGCTAGAGG
CGTCATCAGACGGCAACCTTTTGGCCGTCAAGCAGCTCCTCGCCGGCGGA
GCGCCCCGCCACGCCCGTGACGCGGAAGGACGCACCCCTCTGCACCGCGC
TTCGATCGCGGGGCACGCGCACGTAGTTGGGTTTCTTCTCCACGAAGAGG
GAGACGACGAATCGCCCCCTCCCGGCGCGAGCCCTGCTGGCGTGCCCCCC
CCGCCGCGGCTCGTGTGGCAGGCCAGCAAAGAAGGCCCGGTCCTGGTGCC
CTCCGTGTCTCTCCAGAAGCGGGTCACGGTGGATGCCAGGGACGACTTGC
GCTCCTGCCCAGCGCACCTGGCCGCGGCGCGCGGGCACGCGCACGTAGTG
CGGCTGCTGGTCCAGCACGGCGCCGACGTCTCCAGCGTGAACGGCCTGCT
GCAGACGCCCCTCCACGCCGCGGCCGCCGGGGGCTCAAGCGAGAGCATGC
ACGTTTTGCTCGGCGCTGGCGGGGACGTGATGGCGAGGGACAACGCCGGC
AGGGCGCCCCTGCACGTTGCGGCCTCCTTGGGGCACCCGTCCGCGGTGTC
GACCCTGGTGGAGGGCGGGGCAGATACGGAGGCCACGACAACCATCAGCG
GCCGGACCGCTCTGCACGAGGCCTGCGCGAGCCTGAGACCAGAAACCGTG
AAGCAGCTGCTCGATCGCGGCGCGAGTGAGATGGCGGTCGACACGGACGA
ACGGACCCCGAGAGCCATGGTCGGAGAGAGGGTTTCAGACGAGGAGAGGG
TAGTAGACCCTGGCTGCTCCGAGAGGGAGGAGCGGATCCATCGCTTGTTG
GACGACGCCCCGAAAGACAGGCTGTGGCGGCGCCGGCGCCTGCTGCCGCT
GCTGCTCCGGCGACAACCGCCGCCTGCGTACGACGACTCGGCGCTGGATG
ACGGTTTGGATCGCCCTCTGGCGGGCGTTCTAGCAGGCCTGCAAGAGGGC
ATCGTGCGCATCATCGTGTCCTATTTGTGAGACCAGGTTTTCCGGGCCGC
CGAGTGCGAACCGCTGCCGGATTTGGATGCATGGGTCAACCACAGCACCA
CGCCGGACCTTCCCGCCATCGTGGCCGACATGCACCGGAACTCCAGCCGC
GAGAGCTGGTTGAAGTTCCTTGGGTCAGGCCTGCTAGAGGCGTCATCAGA
CGGCAACCTTTTGGCCGTCAAGCAGCTCCTCGCCGGCGGAGCGCCCCGCC
ACGCCCGTGACGCGGAAGGACGCACCCCTCTGCACCGCGCTTCGATCGCG
GGGCACGCGCACGTAGTTGGGTTTCTTCTCCACGAAGAGGGAGACGACGA
ATCGCCCCCTCCCGGCGCGAGCCCTGCTGGCGTGCCCCCCCCGCCGCGGC
TCGTGTGGCAGGCCAGCAAAGAAGGCCCGGTCCTGGTGCCCTCCGTGTCT
CTCCAGAAGCGGGTCACGGTGGATGCCAGGGACGACTTGCGCTCCTGCCC
AGCGCACCTGGCCGCGGCGCGCGGGCACGCGCACGTAGTGCGGCTGCTGG
TCCAGCACGGCGCCGACGTCTCCAGCGTGAACGGCCTGCTGCAGACGCCC
CTCCACGCCGCGGCCGCCGGGGGCTCAAGCGAGAGCATGCACGTTTTGCT
CGGCGCTGGCGGGGACGTGATGGCGAGGGACAACGCCGGCAGGGCGCCCC
TGCACGTTGCGGCCTCCTTGGGGCACCCGTCCGCGGTGTCGACCCTGGTG
GAGGGCGGGGCAGATACGGAGGCCACGACAACCATCAGCGGCCGGACCGC
TCTGCACGAGGCCTGCGCGAGCCTGAGACCAGAAACCGTGAAGCAGCTGC
TCGATCGCGGCGCGAGTGAGATGGCGGTCGACACGGACGAACGGACCCCG
AGAGCCATGGTCGGAGAGAGGGTTTCAGACGAGGAGAGGGTAGTAGACCC
TGGCTGCTCCGAGAGGGAGGAGCGGATCCATCGCTTGTTGGACGACGCCC
CGAAAGACAGGCTGTGGCGGCGCCGGCGCCTGCTGCCGCTGCTGCTCCGG
CGACAACCGCCGCCTGCGTACGACGACTCGGCGCTGGATGACGGTTTGGA
TCGCCCTCTGGCGGGCGTTCTAGCAGGCCTGCAAGAGGGCATCGTGCGCA
TCATCGTGTCCTATTTGTGA
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