mRNA_L-elsbetiae_contig10229.276.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10229.276.1
Unique NamemRNA_L-elsbetiae_contig10229.276.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10229.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10229contigL-elsbetiae_contig10229:4282..4941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size660
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10229.276.1prot_L-elsbetiae_contig10229.276.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10229 4362..4691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815253.2391937-UTR-L-elsbetiae_contig10229:4281..43611622815253.2391937-UTR-L-elsbetiae_contig10229:4281..4361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10229 4282..4361 +
1691682797.7251475-UTR-L-elsbetiae_contig10229:4281..43611691682797.7251475-UTR-L-elsbetiae_contig10229:4281..4361Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10229 4282..4361 +
1622815253.2635415-UTR-L-elsbetiae_contig10229:4691..49411622815253.2635415-UTR-L-elsbetiae_contig10229:4691..4941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10229 4692..4941 +
1691682797.7455888-UTR-L-elsbetiae_contig10229:4691..49411691682797.7455888-UTR-L-elsbetiae_contig10229:4691..4941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10229 4692..4941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815253.2531762-CDS-L-elsbetiae_contig10229:4361..46911622815253.2531762-CDS-L-elsbetiae_contig10229:4361..4691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10229 4362..4691 +
1691682797.735412-CDS-L-elsbetiae_contig10229:4361..46911691682797.735412-CDS-L-elsbetiae_contig10229:4361..4691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10229 4362..4691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10229.276.1

>prot_L-elsbetiae_contig10229.276.1 ID=prot_L-elsbetiae_contig10229.276.1|Name=mRNA_L-elsbetiae_contig10229.276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MSDRLLSSDRHAPLMVLYKIRQSPLRYSAPEKKRSVMSIPGTVQQQQQYC
TTGPQKPGLNVTCMQNKGEHVTSPPPFVAKRARREQKKKITFLNTWVYPL
QKTCHAAYY*
back to top

mRNA from alignment at L-elsbetiae_contig10229:4282..4941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10229.276.1 ID=mRNA_L-elsbetiae_contig10229.276.1|Name=mRNA_L-elsbetiae_contig10229.276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig10229:4282..4941+ (Laminarionema elsbetiae ELsaHSoW15)
TAGACCCCCTCCTTGTATAGATAGACCCAGCTCCGACCGTCAGCTCAGCT
TTCCGATCATCGACTTAAACCCTTCCCTGAATGAGTGACCGACTGCTCAG
TAGTGACAGACATGCCCCACTTATGGTATTGTACAAGATCCGACAATCCC
CTTTAAGGTACTCAGCCCCCGAGAAGAAGCGGTCGGTCATGAGCATTCCT
GGCACGGTACAGCAGCAGCAGCAGTATTGTACCACGGGACCACAAAAGCC
CGGCTTGAACGTGACTTGCATGCAGAATAAAGGCGAACATGTTACTTCCC
CTCCCCCGTTCGTTGCGAAGCGTGCAAGAAGAGAACAAAAAAAAAAGATA
ACTTTTCTAAATACGTGGGTATATCCTCTCCAAAAAACGTGCCACGCTGC
ATACTATTAATCCGAAGGGCAGTTTCAAAGACGTATATATCTGACCTTGT
CACCTCTCTTCAAAATCCCGATCCTCGCTGTGAAGTGGCCTACATCTGTC
CGTAATCAGCCAAGCAGTGATGATATGCGGTGGAACCCCGTGCGGTTACA
CAGAGTAAAAAGCTTCCCCAAAGCCCTGACTCGTCAAGACCAAACTACGT
CCCCATGTGGAATAATACGTGCCGCTTAATTAAATCCCACGGGAGTCCCG
TTTCTACCGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10229:4282..4941+

>mRNA_L-elsbetiae_contig10229.276.1 ID=mRNA_L-elsbetiae_contig10229.276.1|Name=mRNA_L-elsbetiae_contig10229.276.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig10229:4282..4941+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTGACCGACTGCTCAGTAGTGACAGACATGCCCCACTTATGGTATT
GTACAAGATCCGACAATCCCCTTTAAGGTACTCAGCCCCCGAGAAGAAGC
GGTCGGTCATGAGCATTCCTGGCACGGTACAGCAGCAGCAGCAGTATTGT
ACCACGGGACCACAAAAGCCCGGCTTGAACGTGACTTGCATGCAGAATAA
AGGCGAACATGTTACTTCCCCTCCCCCGTTCGTTGCGAAGCGTGCAAGAA
GAGAACAAAAAAAAAAGATAACTTTTCTAAATACGTGGGTATATCCTCTC
CAAAAAACGTGCCACGCTGCATACTATTAAATGAGTGACCGACTGCTCAG
TAGTGACAGACATGCCCCACTTATGGTATTGTACAAGATCCGACAATCCC
CTTTAAGGTACTCAGCCCCCGAGAAGAAGCGGTCGGTCATGAGCATTCCT
GGCACGGTACAGCAGCAGCAGCAGTATTGTACCACGGGACCACAAAAGCC
CGGCTTGAACGTGACTTGCATGCAGAATAAAGGCGAACATGTTACTTCCC
CTCCCCCGTTCGTTGCGAAGCGTGCAAGAAGAGAACAAAAAAAAAAGATA
ACTTTTCTAAATACGTGGGTATATCCTCTCCAAAAAACGTGCCACGCTGC
ATACTATTAA
back to top