mRNA_L-elsbetiae_contig10225.275.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: D7FQI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQI6_ECTSI) HSP 1 Score: 108 bits (270), Expect = 9.320e-28 Identity = 51/62 (82.26%), Postives = 57/62 (91.94%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAA 186 G MEGEVRCSDGCIGGNMKAT+ ASKT+LIGKAAVVTGD+ Y SLQV+DG RLQGKLTHY++ Sbjct: 137 GQMEGEVRCSDGCIGGNMKATIIASKTLLIGKAAVVTGDMVYDSLQVLDGGRLQGKLTHYSS 198
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: A0A6H5JYZ3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ3_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.230e-24 Identity = 47/62 (75.81%), Postives = 57/62 (91.94%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAA 186 G MEGEVRCS+GCIGGNMKAT+ AS+T+LIGKAAVVTGD+ Y SLQV++G R+QGKLTHY++ Sbjct: 263 GQMEGEVRCSEGCIGGNMKATIIASETLLIGKAAVVTGDMVYDSLQVLEGGRIQGKLTHYSS 324
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI001E3BA90A (polymer-forming cytoskeletal protein n=1 Tax=Saccharospirillum sp. MSK14-1 TaxID=1897632 RepID=UPI001E3BA90A) HSP 1 Score: 58.5 bits (140), Expect = 8.490e-9 Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAAPPQKEPKPAAA 219 G +EGE+R + I G +K + +S+ I + K AVVTGDV Y ++++ GA++ GKL H A K+ KPAAA Sbjct: 50 GLVEGEIRAPNIVINGEVKGDVYSSEHIELAKKAVVTGDVHYVMMEMVMGAKVNGKLLHVATDKSKKAKPAAA 122
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI000D345703 (polymer-forming cytoskeletal protein n=2 Tax=Saccharospirillum mangrovi TaxID=2161747 RepID=UPI000D345703) HSP 1 Score: 54.3 bits (129), Expect = 3.900e-7 Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAAPPQKEPKPAAA 219 G +EGE+R + I G +K + +S+ I + K AVVTGDV Y ++++ GA++ GKL H A K+ KP + Sbjct: 57 GLVEGEIRAPNIVINGEVKGDVYSSEHIELAKKAVVTGDVHYVMMEMVMGAKVNGKLLHVATDKSKKAKPVTS 129
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI000400B92E (polymer-forming cytoskeletal protein n=2 Tax=Saccharospirillum TaxID=231683 RepID=UPI000400B92E) HSP 1 Score: 53.5 bits (127), Expect = 5.340e-7 Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAAPPQK-----EPKPAAAVKKEPM 237 G +EGE+R + I G +K + +S+ I + K AVVTGDV Y ++++ GA++ GKL H AA K EP A V + PM Sbjct: 57 GYVEGEIRAPNIVINGEVKGDVYSSEHIELAKKAVVTGDVHYVMMEMVMGAKVNGKLLHVAAEKGKKVSKPEPVDAKPVTEAPM 140
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI0018AB98B7 (polymer-forming cytoskeletal protein n=1 Tax=Reinekea sp. G2M2-21 TaxID=2788942 RepID=UPI0018AB98B7) HSP 1 Score: 52.0 bits (123), Expect = 1.820e-6 Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAAPPQKEPKPAAAVKKEPM 237 G +EGE+R I G +K + +S I + K A+VTGDV Y ++++ GA++ GKL H + K+ KP K P+ Sbjct: 57 GIVEGEIRAPHVVINGEVKGDVYSSDHITLNKNALVTGDVHYVMMEMVMGAKVNGKLLHVPSEKGKKSKPDLLTKPTPV 135
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: UPI001C085613 (polymer-forming cytoskeletal protein n=1 Tax=Reinekea forsetii TaxID=1336806 RepID=UPI001C085613) HSP 1 Score: 50.8 bits (120), Expect = 5.580e-6 Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTHYAA 186 G +EGE+R I G +K + +S I + K A+VTGDV Y ++++ GA++ GKL H AA Sbjct: 57 GIVEGEIRAPHVVINGEVKGDVYSSDHITLNKNALVTGDVHYVMMEMVMGAKVNGKLLHVAA 118
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: A0A2E8VHH4_9BACT (Uncharacterized protein n=2 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E8VHH4_9BACT) HSP 1 Score: 49.3 bits (116), Expect = 1.880e-5 Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLT 174 G G ++ SD IGG++K + S I++G + ++GD+TY SL + DGA+ QG + Sbjct: 51 GKXXGNIQASDAHIGGSIKGDIXVSNKIVLGSKSEISGDLTYRSLIIEDGAQFQGSCS 108
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: A0A2K8KU71_9GAMM (Cell shape-determining protein CcmA n=1 Tax=Reinekea forsetii TaxID=1336806 RepID=A0A2K8KU71_9GAMM) HSP 1 Score: 48.9 bits (115), Expect = 2.810e-5 Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKLTH 177 G +EGE+R I G +K + +S+ I + K A+VTGDV Y ++++ GA++ GKL H Sbjct: 57 GIVEGEIRAPHVVINGEVKGDVYSSEHITLNKNALVTGDVHYVMMEMVMGAKVNGKLLH 115
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Match: I0HV62_RUBGI (Uncharacterized protein n=3 Tax=Rubrivivax gelatinosus TaxID=28068 RepID=I0HV62_RUBGI) HSP 1 Score: 48.1 bits (113), Expect = 4.580e-5 Identity = 32/76 (42.11%), Postives = 44/76 (57.89%), Query Frame = 1 Query: 1 GDMEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARLQGKL--THYAAPPQKEPKPAAAV 222 G +EG + + I G + T+ A + I+I AVVTG VTY ++Q+ GAR+ G L + AAPP P PA AV Sbjct: 50 GRVEGSLSARNVDIRGEVGETIVAREQIVIRSTAVVTGTVTYQTIQIEGGARIDGHLRRSDTAAPP---PAPAPAV 122 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10225.275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10225.275.1 >prot_L-elsbetiae_contig10225.275.1 ID=prot_L-elsbetiae_contig10225.275.1|Name=mRNA_L-elsbetiae_contig10225.275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp MEGEVRCSDGCIGGNMKATLSASKTILIGKAAVVTGDVTYSSLQVMDGARback to top mRNA from alignment at L-elsbetiae_contig10225:6052..6288- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10225.275.1 ID=mRNA_L-elsbetiae_contig10225.275.1|Name=mRNA_L-elsbetiae_contig10225.275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=237bp|location=Sequence derived from alignment at L-elsbetiae_contig10225:6052..6288- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10225:6052..6288- >mRNA_L-elsbetiae_contig10225.275.1 ID=mRNA_L-elsbetiae_contig10225.275.1|Name=mRNA_L-elsbetiae_contig10225.275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig10225:6052..6288- (Laminarionema elsbetiae ELsaHSoW15)back to top |