mRNA_L-elsbetiae_contig13599.2734.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13599.2734.1
Unique NamemRNA_L-elsbetiae_contig13599.2734.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: D8LCL7_ECTSI (Flagellar associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCL7_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 2.460e-52
Identity = 187/198 (94.44%), Postives = 192/198 (96.97%), Query Frame = 1
Query:   19 QGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAREACSSLSMVLRKPGKKLATLDLSCNELQDDDVRLLCVALDRNASLTSIDLRMNDISADLEDLDKIEKMVHANELRAREA 612
            QGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKIT     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAREACSSLSMVLRKPGK LATLDLSCNELQDDD+RLLCVAL+RN+SLTSIDLRMND+SADLEDL+KIEKMVHANELRAREA
Sbjct:  315 QGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAREACSSLSMVLRKPGKVLATLDLSCNELQDDDIRLLCVALERNSSLTSIDLRMNDVSADLEDLEKIEKMVHANELRAREA 512          
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: A0A7S2S000_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S000_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.420e-21
Identity = 135/196 (68.88%), Postives = 152/196 (77.55%), Query Frame = 1
Query:   25 NLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAREACSSLSMVLRKPGKKLATLDLSCNELQDDDVRLLCVALDRNASLTSIDLRMN-DISADLED-LDKIEKMVHANELRAR 606
            NLIDDDL+RMLMTGLI+N +IT+LDVSHNKITNHG R          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  S+  E   +L+ VL++P   L+TLDLSCN+L   DV  L   L  N  +TSIDLRMN ++  D E+ LD I +MVH NE+ AR
Sbjct:  147 NLIDDDLLRMLMTGLIKNDSITHLDVSHNKITNHGVRLLAKLLGGQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSLGNETVGALAAVLQEPECPLSTLDLSCNDLDTQDVITLESVLSENRIMTSIDLRMNPNVGEDAEEALDSINRMVHFNEIDAR 342          
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: A0A835Z8G8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.260e-15
Identity = 107/219 (48.86%), Postives = 123/219 (56.16%), Query Frame = 1
Query:   19 QGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------SIAREACSSLSMVLRKPGKKLATLDLSCNELQDDDVRLLCVALDRN---------------ASLTSIDLRMNDISADLEDLDKIEKMVHANELRAR 606
            +G L+DDDL+RML  GL R +T+T+LD+SHN+I +HGAR        XXXXXXXXXX                             XXXXXXXXXXXXXXXXXXXXXXXXXXXXX        S+ RE    L  +LR PG  L  LDLS NEL DDD R L  AL+                 A + S+DLR N +SA LEDL+ IE  VHANEL  R
Sbjct:  231 RGGLVDDDLLRMLAAGLARAATLTHLDLSHNRIADHGARLLARLLCGXXXXXXXXXXALTALSLADNAIRAEGARHLGRALRENDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNSLGRETAVVLGALLRSPGHGLRVLDLSSNELTDDDARTLRAALEARPAGXXXXXXXXXXXGAPIVSLDLRANRLSAGLEDLEAIEARVHANELAER 449          
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: A0A482UXY9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UXY9_9ARCH)

HSP 1 Score: 68.6 bits (166), Expect = 8.220e-12
Identity = 31/36 (86.11%), Postives = 36/36 (100.00%), Query Frame = 1
Query:   28 LIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGAR 135
            +IDDDL+RMLMTGLI+N+TITYLD+SHNKITNHGAR
Sbjct:    1 MIDDDLLRMLMTGLIKNTTITYLDMSHNKITNHGAR 36          
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: F0YNH4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNH4_AURAN)

HSP 1 Score: 59.3 bits (142), Expect = 4.410e-7
Identity = 103/168 (61.31%), Postives = 124/168 (73.81%), Query Frame = 1
Query:   19 QGNLIDDDLMRMLMTGLIRNSTITYLD----VSHNKITNHGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAREACSSLSMVLRKPGKKLATLDLSCNELQDDDVRLLCVALDRNASL 510
            Q NLIDDDL+RMLMTGLI+   + + D    +SHNK+TNHG R                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS+  E+ ++L+ +L  P  +L++LDLSCN+L + D++ + +ALD N  L
Sbjct:   97 QSNLIDDDLLRMLMTGLIK---VLFHDFSIYLSHNKVTNHGVRLLSKLLGARSVLTNLNLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMGSESANALANILADPCSRLSSLDLSCNDLTEQDLKHVMIALDENKVL 261          
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: A0A1W0ABG7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ABG7_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.780e-6
Identity = 125/204 (61.27%), Postives = 148/204 (72.55%), Query Frame = 1
Query:    1 LSYIMRQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIAREACSSLSMVLRKPGKKLATLDLSCNELQDDDVRLLCVALDRNASLTSIDLRMNDISADLEDLDKIEKMVHANELRAREA 612
            LS ++   NL+DDDL+RM+MTGLI+NST+T LD+S          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX++ R+   +L  +L  P   L  LDLS N   + DV  L   L+RN  + + DLR N I  +   L +I +++  NE+  R A
Sbjct:  227 LSSLLLPSNLLDDDLLRMIMTGLIKNSTVTTLDLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALGRDTAEALCGLLFDPECPLTILDLSGNNFTESDVSALYEGLERNTKVVTFDLRQNQIPKEANVLIQIAQIIRRNEIEGRHA 430          
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: J9IB95_9SPIT (Flagellar associated protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IB95_9SPIT)

HSP 1 Score: 54.3 bits (129), Expect = 3.710e-5
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 LSYIMRQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGAR 135
            L Y+   GNLIDDDL+ +L+ GL+ N TI+ LD SHNKI+N GAR
Sbjct:  247 LIYLSLPGNLIDDDLISILIKGLMLNKTISQLDFSHNKISNSGAR 291          
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: A0A8J8NDT2_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NDT2_HALGN)

HSP 1 Score: 53.9 bits (128), Expect = 4.970e-5
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 LSYIMRQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGAR 135
            L ++   GNLIDDDL+ +L+ GL+ N TI+ LD+SHNKI+N GAR
Sbjct:  240 LIFLSMPGNLIDDDLISILIKGLMLNKTISQLDLSHNKISNSGAR 284          
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: A0A078A220_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A220_STYLE)

HSP 1 Score: 53.5 bits (127), Expect = 6.720e-5
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 LSYIMRQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGAR 135
            L Y+   GNLIDDDL+ +L+ GL+ N T++ LD SHNKI+N GAR
Sbjct:  243 LIYLSLPGNLIDDDLISILIKGLMLNKTLSQLDFSHNKISNSGAR 287          
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Match: A0A418B0C2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B0C2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 8.870e-5
Identity = 28/77 (36.36%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  376 EACSSLSMVLRKPGKKLATLDLSCNELQDDDVRLLCVALDRNASLTSIDLRMNDISADLEDLDKIEKMVHANELRAR 606
            E   +L  +   P   L+ +DLS N+LQ+ DV  L   L++N  + ++DLR N IS D   L +I ++V  NE+  R
Sbjct:  153 ETAEALCRLFLDPDSALSVIDLSGNQLQESDVISLYEGLEKNTRVVTLDLRQNQISKDTSALTQIAQIVRRNEIEGR 229          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13599.2734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LCL7_ECTSI2.460e-5294.44Flagellar associated protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2S000_9STRA1.420e-2168.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z8G8_9STRA2.260e-1548.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482UXY9_9ARCH8.220e-1286.11Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
F0YNH4_AURAN4.410e-761.31Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1W0ABG7_9STRA7.780e-661.27Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
J9IB95_9SPIT3.710e-560.00Flagellar associated protein n=1 Tax=Oxytricha tri... [more]
A0A8J8NDT2_HALGN4.970e-557.78Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
A0A078A220_STYLE6.720e-557.78Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
A0A418B0C2_9STRA8.870e-536.36Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13599contigL-elsbetiae_contig13599:407..2831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue1.7e-44
Seed eggNOG ortholog2880.D8LCL7
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Ec32 ortholog descriptionflagellar associated protein
Ec32 orthologEc-03_002410.1
Exons6
Model size618
Cds size606
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.2101455-UTR-L-elsbetiae_contig13599:406..4181622815526.2101455-UTR-L-elsbetiae_contig13599:406..418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13599 407..418 +
1691682940.6570992-UTR-L-elsbetiae_contig13599:406..4181691682940.6570992-UTR-L-elsbetiae_contig13599:406..418Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13599 407..418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815526.2232146-CDS-L-elsbetiae_contig13599:418..5331622815526.2232146-CDS-L-elsbetiae_contig13599:418..533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 419..533 +
1691682940.6721783-CDS-L-elsbetiae_contig13599:418..5331691682940.6721783-CDS-L-elsbetiae_contig13599:418..533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 419..533 +
1622815526.2364604-CDS-L-elsbetiae_contig13599:961..10321622815526.2364604-CDS-L-elsbetiae_contig13599:961..1032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 962..1032 +
1691682940.6828609-CDS-L-elsbetiae_contig13599:961..10321691682940.6828609-CDS-L-elsbetiae_contig13599:961..1032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 962..1032 +
1622815526.2508929-CDS-L-elsbetiae_contig13599:1348..15061622815526.2508929-CDS-L-elsbetiae_contig13599:1348..1506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 1349..1506 +
1691682940.6905706-CDS-L-elsbetiae_contig13599:1348..15061691682940.6905706-CDS-L-elsbetiae_contig13599:1348..1506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 1349..1506 +
1622815526.2630556-CDS-L-elsbetiae_contig13599:1789..18921622815526.2630556-CDS-L-elsbetiae_contig13599:1789..1892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 1790..1892 +
1691682940.6997335-CDS-L-elsbetiae_contig13599:1789..18921691682940.6997335-CDS-L-elsbetiae_contig13599:1789..1892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 1790..1892 +
1622815526.2765238-CDS-L-elsbetiae_contig13599:2185..22991622815526.2765238-CDS-L-elsbetiae_contig13599:2185..2299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 2186..2299 +
1691682940.711076-CDS-L-elsbetiae_contig13599:2185..22991691682940.711076-CDS-L-elsbetiae_contig13599:2185..2299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 2186..2299 +
1622815526.2862449-CDS-L-elsbetiae_contig13599:2786..28311622815526.2862449-CDS-L-elsbetiae_contig13599:2786..2831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 2787..2831 +
1691682940.7213035-CDS-L-elsbetiae_contig13599:2786..28311691682940.7213035-CDS-L-elsbetiae_contig13599:2786..2831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13599 2787..2831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13599.2734.1prot_L-elsbetiae_contig13599.2734.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13599 419..2831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13599.2734.1

>prot_L-elsbetiae_contig13599.2734.1 ID=prot_L-elsbetiae_contig13599.2734.1|Name=mRNA_L-elsbetiae_contig13599.2734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
MRQGNLIDDDLMRMLMTGLIRNSTITYLDVSHNKITNHGARLLSKLLGEN
SVLSTLNLADNQIHAEGGRYIGRALRSNTSLVSLNLRLNRLTDEGGRMLL
EGLHDNPTLACLNLSANSIAREACSSLSMVLRKPGKKLATLDLSCNELQD
DDVRLLCVALDRNASLTSIDLRMNDISADLEDLDKIEKMVHANELRAREA
A*
back to top

mRNA from alignment at L-elsbetiae_contig13599:407..2831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13599.2734.1 ID=mRNA_L-elsbetiae_contig13599.2734.1|Name=mRNA_L-elsbetiae_contig13599.2734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2425bp|location=Sequence derived from alignment at L-elsbetiae_contig13599:407..2831+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTCGTATATTATGCGCCAGGGCAATCTGATCGACGACGACCTTATGCG AATGCTGATGACCGGGCTTATAAGAAACTCTACTATCACCTACCTGGACG TGAGCCATAACAAGATCACCAACCATGGTAAGCAACACAACAGGACGAAG TGATGCCACCCGACATGACGAAGTCGCAGCGTGAGGTGTGGGGGTACAGA ACTGAACCGGTTTCCCACGAACTTGAGTGTACTAGATATATAGATTGATT TTCTTGCCTGCTTCGAACCGACGAGCTTACGAGCTTCAGGTTGCACATGA TCGTCAAAGACTGGTTGCGCCTGACGTTCCGTACCTTCTGCCACGGCGGG CTTTTGTTCCAGGAGGTTTCATAATCGAATCCGTCAGCCGCATCGGAAAA TGTGCCACCTTGTTCTGTATTCTTCGATGTACACGTATATGTTCTACTCA ATCTGCCAACACGTAAAACCTGTAGTTCAGTGTCTACTCGAAGGAGAACA ATCCCCCGCGGTGTCGATACCCGACACCCTCCGGGACGATATCTCTTCTC CCCAGGCGCCAGGCTGCTCTCCAAGCTACTCGGCGAGAACAGCGTGCTCT CCACCCTCAACCTTGCAGACAACCAGGTGAGGCCAACTAGGGTCTTTCAC ATACTTCGTATACATGGAGGGTCAAAGCGCTCTTCCCCATGATAGCCAAC GGGGTGAAAGAGGGTGGGTACTCGGGGAGTTATTTAGTGCTAGGGCGATC ACGTCCCCCAGTTCCAGCCCCATCAATCATGTAGAACTGCTACATATTAT TTTACACTTTTAGCGATGTCGTGCGTAGTCGCCCTGGCCGCCAAGAACGC TGTCCCATTAGAGGTGTACCCATTATACGGTTGGTTGTTGCCGAACCTTC GCCCCTCGTGTTTATCGTCGCGCGCGCGTCGTTGTGCCGCAGATCCACGC GGAGGGGGGAAGGTACATCGGGAGGGCTCTTCGGAGCAACACCTCCCTGG TCAGCCTGAACCTCCGCTTGAACCGCTTGACGGACGAGGGTGGCAGGATG CTCTTGGAAGGGCTACACGACAACCCAACGCTTGCCTGCTTAAACCTCAG GTAGGCTCGGGCGACGCTACTTCCGCGGCAAGCTTTGGGATCAGAATGGC CTGGGATGGGTTCGAATCGAGCCTACCAGCGTGGCGAAAGTTGGGTGCTC TAAGTAGCAGCGAGGCAGGCTTCACCCTGTCACGGTTTCTGAGGGTACAC CTCTACTGTAGCAATGCATATCGTCGAGTGGCAACACAAGCTTTGCGGCC AGCGGTACCAACGACATGAGCTCCAAACGACAACCCGACCTATTGCCCCC CCTCGAACTGGTATTCAACATTCGACTTCAAAGCGCTAACTCCATTGCTC GAGAGGCGTGCTCTTCGCTGAGCATGGTGCTAAGAAAACCCGGGAAAAAG CTCGCGACGCTGGACCTCAGCTGCAACGAGCTGCAGGTATTTACGAATGT CTTAAACACGCTCTTCGAATAATCGTTTTAGCTCCGTATTTGTCACGTAC GACATTACCGATGTATCATAACCGTCTCTTTTACGAAAATGGGGATGAAC GAGCTTGTCCACGTCGTAGCGGTCGAGCCCCGCCCACGCATAGATAGTAC ATAAAAATGGTGTTTCGGTGCTATTGCGCGGACCACGATCCCCCCGAGAG AAGACATATTGTGAAGATTTCTGGTTTTCGTGGAAGTGAAGTGAAAAGAA GGTGTGTGCTCCGTCTCTCATCCTTTCAGGATGACGATGTACGACTGTTG TGCGTGGCGCTGGATAGAAACGCCTCCTTGACGTCCATCGACCTTCGCAT GAACGATATCTCGGCCGACCTGGAGGACCTTGACAAAATTGAGGTGCGAA AAACAGCAACTACTCTGTAGCTGTGACTGACTGAATATACCACAACTTGG CCTTTGTTACAGTACATAGTGCCCCCACGGTACATATTGCGGCAGGCGAC GAAAGAGCCCAACGGCAACTGATATGGAACCAGTTTCAGATTCAGATTAT AAGTGCTCCGAAAACGCTGCACGTTGAAGAAGCATTTGGGTTTGTGGAGT ACAAATACAACACGTTCTGATATTTAGCACAGAACTGAAGTGGAACAAAC AAGTGTAATTGAACGTATTTTTGTGTTCGGCATGCCTTCGGGGTTCTCAC GGGGATGGGCTATCGTTCAGGGACCATCTAAATAGTGGTAGCGCTTGCTT GCTGCGCCCCAGGACGACTTCATGAAAATCACGAACTGTCGGAGCCCCCT GGAACCGGACGCCTCGCTTTACTTTGGCATCTCGACCACCATGTATCGGC TCCCGATTTCCCTCCCACCCATATCTGCAGAAAATGGTGCACGCTAACGA GCTGCGCGCGCGCGAAGCAGCATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13599:407..2831+

>mRNA_L-elsbetiae_contig13599.2734.1 ID=mRNA_L-elsbetiae_contig13599.2734.1|Name=mRNA_L-elsbetiae_contig13599.2734.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig13599:407..2831+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCCAGGGCAATCTGATCGACGACGACCTTATGCGAATGCTGATGAC
CGGGCTTATAAGAAACTCTACTATCACCTACCTGGACGTGAGCCATAACA
AGATCACCAACCATGATGCGCCAGGGCAATCTGATCGACGACGACCTTAT
GCGAATGCTGATGACCGGGCTTATAAGAAACTCTACTATCACCTACCTGG
ACGTGAGCCATAACAAGATCACCAACCATGGCGCCAGGCTGCTCTCCAAG
CTACTCGGCGAGAACAGCGTGCTCTCCACCCTCAACCTTGCAGACAACCA
GGCGCCAGGCTGCTCTCCAAGCTACTCGGCGAGAACAGCGTGCTCTCCAC
CCTCAACCTTGCAGACAACCAGATCCACGCGGAGGGGGGAAGGTACATCG
GGAGGGCTCTTCGGAGCAACACCTCCCTGGTCAGCCTGAACCTCCGCTTG
AACCGCTTGACGGACGAGGGTGGCAGGATGCTCTTGGAAGGGCTACACGA
CAACCCAACGCTTGCCTGCTTAAACCTCAGATCCACGCGGAGGGGGGAAG
GTACATCGGGAGGGCTCTTCGGAGCAACACCTCCCTGGTCAGCCTGAACC
TCCGCTTGAACCGCTTGACGGACGAGGGTGGCAGGATGCTCTTGGAAGGG
CTACACGACAACCCAACGCTTGCCTGCTTAAACCTCAGCGCTAACTCCAT
TGCTCGAGAGGCGTGCTCTTCGCTGAGCATGGTGCTAAGAAAACCCGGGA
AAAAGCTCGCGACGCTGGACCTCAGCTGCAACGAGCTGCAGCGCTAACTC
CATTGCTCGAGAGGCGTGCTCTTCGCTGAGCATGGTGCTAAGAAAACCCG
GGAAAAAGCTCGCGACGCTGGACCTCAGCTGCAACGAGCTGCAGGATGAC
GATGTACGACTGTTGTGCGTGGCGCTGGATAGAAACGCCTCCTTGACGTC
CATCGACCTTCGCATGAACGATATCTCGGCCGACCTGGAGGACCTTGACA
AAATTGAGGATGACGATGTACGACTGTTGTGCGTGGCGCTGGATAGAAAC
GCCTCCTTGACGTCCATCGACCTTCGCATGAACGATATCTCGGCCGACCT
GGAGGACCTTGACAAAATTGAGAAAATGGTGCACGCTAACGAGCTGCGCG
CGCGCGAAGCAGCATGAAAAATGGTGCACGCTAACGAGCTGCGCGCGCGC
GAAGCAGCATGA
back to top