mRNA_L-elsbetiae_contig13589.2727.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13589.2727.1
Unique NamemRNA_L-elsbetiae_contig13589.2727.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13589.2727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13589contigL-elsbetiae_contig13589:1067..1426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13589.2727.1prot_L-elsbetiae_contig13589.2727.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13589 1085..1405 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.6055176-UTR-L-elsbetiae_contig13589:1066..10841622815525.6055176-UTR-L-elsbetiae_contig13589:1066..1084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13589 1067..1084 +
1691682940.281639-UTR-L-elsbetiae_contig13589:1066..10841691682940.281639-UTR-L-elsbetiae_contig13589:1066..1084Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13589 1067..1084 +
1622815525.6280448-UTR-L-elsbetiae_contig13589:1405..14261622815525.6280448-UTR-L-elsbetiae_contig13589:1405..1426Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13589 1406..1426 +
1691682940.2991962-UTR-L-elsbetiae_contig13589:1405..14261691682940.2991962-UTR-L-elsbetiae_contig13589:1405..1426Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13589 1406..1426 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.6171608-CDS-L-elsbetiae_contig13589:1084..14051622815525.6171608-CDS-L-elsbetiae_contig13589:1084..1405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13589 1085..1405 +
1691682940.29071-CDS-L-elsbetiae_contig13589:1084..14051691682940.29071-CDS-L-elsbetiae_contig13589:1084..1405Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13589 1085..1405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13589.2727.1

>prot_L-elsbetiae_contig13589.2727.1 ID=prot_L-elsbetiae_contig13589.2727.1|Name=mRNA_L-elsbetiae_contig13589.2727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MCVCVCVFLSKGYLRYVWSICLHFSARVLRNLYTAVAVLQSLPLLTSSLS
PTATEQHARADQRTHRRLDTPSPLAHSSPETQPPCSKDYLYSCVRLAPWH
LPQFYL*
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mRNA from alignment at L-elsbetiae_contig13589:1067..1426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13589.2727.1 ID=mRNA_L-elsbetiae_contig13589.2727.1|Name=mRNA_L-elsbetiae_contig13589.2727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig13589:1067..1426+ (Laminarionema elsbetiae ELsaHSoW15)
GTGATTCACGGCACCCCTATGTGTGTGTGTGTGTGTGTGTTCCTTTCCAA
AGGATACCTGCGTTATGTATGGAGTATTTGTCTGCACTTTTCAGCTCGCG
TGCTCCGTAACTTGTACACAGCAGTAGCAGTATTGCAGTCACTACCGCTG
TTAACCTCATCGCTCTCCCCCACTGCAACAGAACAGCACGCCAGAGCGGA
CCAACGCACGCACCGCCGCTTGGACACGCCATCTCCTCTCGCCCATTCTT
CCCCCGAAACCCAACCTCCATGTAGCAAGGACTACCTTTACTCGTGTGTT
AGATTGGCACCCTGGCATTTGCCACAGTTTTACCTATAAAGCGCGCACTG
AGCCCCCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13589:1067..1426+

>mRNA_L-elsbetiae_contig13589.2727.1 ID=mRNA_L-elsbetiae_contig13589.2727.1|Name=mRNA_L-elsbetiae_contig13589.2727.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig13589:1067..1426+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGTGTGTGTGTGTGTGTGTTCCTTTCCAAAGGATACCTGCGTTATGT
ATGGAGTATTTGTCTGCACTTTTCAGCTCGCGTGCTCCGTAACTTGTACA
CAGCAGTAGCAGTATTGCAGTCACTACCGCTGTTAACCTCATCGCTCTCC
CCCACTGCAACAGAACAGCACGCCAGAGCGGACCAACGCACGCACCGCCG
CTTGGACACGCCATCTCCTCTCGCCCATTCTTCCCCCGAAACCCAACCTC
CATGTAGCAAGGACTACCTTTACTCGTGTGTTAGATTGGCACCCTGGCAT
TTGCCACAGTTTTACCTATAAATGTGTGTGTGTGTGTGTGTGTTCCTTTC
CAAAGGATACCTGCGTTATGTATGGAGTATTTGTCTGCACTTTTCAGCTC
GCGTGCTCCGTAACTTGTACACAGCAGTAGCAGTATTGCAGTCACTACCG
CTGTTAACCTCATCGCTCTCCCCCACTGCAACAGAACAGCACGCCAGAGC
GGACCAACGCACGCACCGCCGCTTGGACACGCCATCTCCTCTCGCCCATT
CTTCCCCCGAAACCCAACCTCCATGTAGCAAGGACTACCTTTACTCGTGT
GTTAGATTGGCACCCTGGCATTTGCCACAGTTTTACCTATAA
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