mRNA_L-elsbetiae_contig13588.2726.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13588.2726.1
Unique NamemRNA_L-elsbetiae_contig13588.2726.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: D8LDE8_ECTSI (RNA pseudouridylate synthase domain-containing protein (C-terminal) RNA pseudouridylate synthase dom n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE8_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 7.060e-28
Identity = 68/106 (64.15%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  615 EDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKV------------------KGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            +DPS+MR SRRIARSG+ASRREAER+VEAGVV VNG  VQTPALNVG RDIVKV                  +G+ LERPE HT +LWM HK R ELVTRHD  GR
Sbjct:  108 KDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFQQPGNGTDCFTFVQGKVLERPESHTPKLWMVHKMRNELVTRHDPEGR 213          
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A6H5J9J6_9PHAE (S4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9J6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.320e-25
Identity = 67/126 (53.17%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  609 QMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVK------------------------------------GRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            +++DPS+MR SRRIARSG+ASRREAER+VEAGVV VNG  VQTPALNVG RDIVKV                                     G+ LERPE HT +LWM HK R ELVTR D  GR
Sbjct:  106 KIKDPSVMRLSRRIARSGIASRREAERMVEAGVVMVNGATVQTPALNVGPRDIVKVNVGLFLQLGNGADYRFFVQVDFDALLLCLSYLSDTALGKVLERPESHTPKLWMVHKMRNELVTRDDPEGR 231          
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A1H7NFQ5_9RHOB (Pseudouridine synthase n=2 Tax=Roseovarius azorensis TaxID=1287727 RepID=A0A1H7NFQ5_9RHOB)

HSP 1 Score: 77.8 bits (190), Expect = 5.790e-13
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  603 RLQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            R+ ++ PS  R ++ IAR+G+ASRREAERL+EAG VTVNG  +   ALNV   D + V GRAL+ PE     LW+ HK    + T  D  GR
Sbjct:   18 RMSIKPPSGERIAKVIARAGIASRREAERLIEAGRVTVNGRKIDRAALNVTPNDKIAVDGRALDAPEP--ARLWLYHKPVGRVTTSRDEQGR 107          
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A2M7F0C1_9RHOB (Pseudouridine synthase n=1 Tax=Rhodobacteraceae bacterium CG17_big_fil_post_rev_8_21_14_2_50_63_15 TaxID=1974082 RepID=A0A2M7F0C1_9RHOB)

HSP 1 Score: 76.6 bits (187), Expect = 1.290e-12
Identity = 45/92 (48.91%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  603 RLQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            R+  E  S  R ++ IAR+G+ASRR+AERL+EAG VTVNG  + +PALNV   D + V GR LE PE     LW+ HK    + T  D  GR
Sbjct:    4 RMSTEPSSGDRIAKVIARAGIASRRDAERLIEAGRVTVNGQKIVSPALNVTPADRITVDGRPLEAPEP--ARLWLYHKPAGRVTTSRDEQGR 93          
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A3M2ENI0_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2ENI0_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 3.160e-12
Identity = 43/91 (47.25%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  606 LQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            ++  D S  R +RR+AR+G+ASRR AERL+  G V VNG  + TPALNVG RD+++V GR L  PE   + LW  HK    + +  D  GR
Sbjct:    1 MEDRDDSAERIARRLARAGLASRRGAERLIAEGRVRVNGRLIDTPALNVGPRDLIEVDGRPLPAPEP--VRLWRYHKPAGLVTSAADEKGR 89          
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A350AJK0_9RHOB (Pseudouridine synthase (Fragment) n=2 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A350AJK0_9RHOB)

HSP 1 Score: 76.6 bits (187), Expect = 3.530e-12
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 3
Query:  648 IARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            IAR+G+ASRR+AE+LVE G VTVNG PV +PA NVG +D V V GR L+ PE     LW+ HK    + T  D  GR
Sbjct:   15 IARAGVASRRDAEKLVEEGAVTVNGKPVTSPATNVGPKDRVAVNGRVLDPPEP--TRLWLYHKPTGLVTTAKDEEGR 89          
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A0N7M8E9_9RHOB (Pseudouridine synthase n=2 Tax=Shimia thalassica TaxID=1715693 RepID=A0A0N7M8E9_9RHOB)

HSP 1 Score: 74.7 bits (182), Expect = 6.960e-12
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  606 LQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            +  E P   R ++ +AR+G+ASRREAER++EAG VTVNG  +Q+PALNV   D + V G+ L  PE     LW+ HK    + +  D  GR
Sbjct:    1 MTQETPKGDRIAKVLARAGVASRREAERMIEAGRVTVNGRKIQSPALNVTAEDKITVDGKPLSEPEPE--RLWLYHKPTGLVTSHKDEQGR 89          
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A6N8A6L7_9HYPH (Pseudouridine synthase n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A6N8A6L7_9HYPH)

HSP 1 Score: 74.7 bits (182), Expect = 8.140e-12
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 3
Query:  600 LRLQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            LR+    P   R ++ +AR+G+ASRREAER++EAG VTVNG  + +PALNV  RD + V G+ +  PE     LW+ HK    + T  D  GR
Sbjct:   20 LRMSNTPPPGDRIAKVLARAGIASRREAERMIEAGRVTVNGKAIDSPALNVTARDKITVDGKPVSEPEP--ARLWLYHKPVGLVTTTRDEKGR 110          
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A3W2L8_9RHOB (Pseudouridine synthase n=5 Tax=Roseovarius TaxID=74030 RepID=A3W2L8_9RHOB)

HSP 1 Score: 74.3 bits (181), Expect = 8.550e-12
Identity = 46/92 (50.00%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  603 RLQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            R+  + P   R ++ IAR+G+ASRREAERL+EAG VTVNG  V   ALNV   D V V GRAL+ PE     LW+ HK    + T  D  GR
Sbjct:    6 RMNTKTPEGERIAKVIARAGIASRREAERLIEAGRVTVNGQKVLRAALNVTPADKVVVDGRALDAPEP--ARLWLYHKPTGLVTTTRDEQGR 95          
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Match: A0A4Q2A4M9_9RHOB (Pseudouridine synthase n=2 Tax=unclassified Roseovarius TaxID=2614913 RepID=A0A4Q2A4M9_9RHOB)

HSP 1 Score: 74.3 bits (181), Expect = 8.550e-12
Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = 3
Query:  606 LQMEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLRDIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGR 878
            +    P   R ++ IAR+G ASRREAERL+EAG VTVNG  +   ALNV   D V V GRAL+ PE     LW+ HK R  + T  D  GR
Sbjct:    1 MDSNTPKGERIAKVIARAGRASRREAERLIEAGRVTVNGQKITRAALNVTPADRVTVDGRALDAPEPP--RLWLYHKPRGRVTTTSDEQGR 89          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13588.2726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDE8_ECTSI7.060e-2864.15RNA pseudouridylate synthase domain-containing pro... [more]
A0A6H5J9J6_9PHAE2.320e-2553.17S4 domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A1H7NFQ5_9RHOB5.790e-1348.91Pseudouridine synthase n=2 Tax=Roseovarius azorens... [more]
A0A2M7F0C1_9RHOB1.290e-1248.91Pseudouridine synthase n=1 Tax=Rhodobacteraceae ba... [more]
A0A3M2ENI0_9PROT3.160e-1247.25Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]
A0A350AJK0_9RHOB3.530e-1254.55Pseudouridine synthase (Fragment) n=2 Tax=Rhodobac... [more]
A0A0N7M8E9_9RHOB6.960e-1245.05Pseudouridine synthase n=2 Tax=Shimia thalassica T... [more]
A0A6N8A6L7_9HYPH8.140e-1245.16Pseudouridine synthase n=3 Tax=Alphaproteobacteria... [more]
A3W2L8_9RHOB8.550e-1250.00Pseudouridine synthase n=5 Tax=Roseovarius TaxID=7... [more]
A0A4Q2A4M9_9RHOB8.550e-1249.45Pseudouridine synthase n=2 Tax=unclassified Roseov... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13588contigL-elsbetiae_contig13588:3023..4218 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.9
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog89187.ISM_11490
Preferred namerluB
KEGG koko:K06178,ko:K06181,ko:K06182,ko:K06183
Hectar predicted targeting categoryother localisation
EggNOG free text desc.COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases
EggNOG OGs1MUCE@1224,2TQP2@28211,46PST@74030,COG1187@1,COG1187@2
EC5.4.99.19,5.4.99.20,5.4.99.21,5.4.99.22
COG Functional cat.J
Best tax levelRoseovarius
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons2
Model size881
Cds size270
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13588.2726.1prot_L-elsbetiae_contig13588.2726.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13588 3634..4218 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.5450983-UTR-L-elsbetiae_contig13588:3022..36331622815525.5450983-UTR-L-elsbetiae_contig13588:3022..3633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13588 3023..3633 +
1691682940.2476745-UTR-L-elsbetiae_contig13588:3022..36331691682940.2476745-UTR-L-elsbetiae_contig13588:3022..3633Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13588 3023..3633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815525.5570836-CDS-L-elsbetiae_contig13588:3633..38011622815525.5570836-CDS-L-elsbetiae_contig13588:3633..3801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13588 3634..3801 +
1691682940.2650368-CDS-L-elsbetiae_contig13588:3633..38011691682940.2650368-CDS-L-elsbetiae_contig13588:3633..3801Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13588 3634..3801 +
1622815525.5707686-CDS-L-elsbetiae_contig13588:4116..42181622815525.5707686-CDS-L-elsbetiae_contig13588:4116..4218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13588 4117..4218 +
1691682940.273573-CDS-L-elsbetiae_contig13588:4116..42181691682940.273573-CDS-L-elsbetiae_contig13588:4116..4218Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13588 4117..4218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13588.2726.1

>prot_L-elsbetiae_contig13588.2726.1 ID=prot_L-elsbetiae_contig13588.2726.1|Name=mRNA_L-elsbetiae_contig13588.2726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MEDPSMMRPSRRIARSGMASRREAERLVEAGVVTVNGTPVQTPALNVGLR
DIVKVKGRALERPEDHTLELWMAHKTRRELVTRHDSTGRW
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mRNA from alignment at L-elsbetiae_contig13588:3023..4218+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13588.2726.1 ID=mRNA_L-elsbetiae_contig13588.2726.1|Name=mRNA_L-elsbetiae_contig13588.2726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1196bp|location=Sequence derived from alignment at L-elsbetiae_contig13588:3023..4218+ (Laminarionema elsbetiae ELsaHSoW15)
CAATCGCGCGTCCACAAGCACGAGGGCCATGCCGGCGGCACGAGCCGCAA GCCGTGCGGGCGGCGGGACTGTCAGCAACCGCCGTGCCCGCCCGGCGCGC GGCTGCCGCAGGCCTTCACCTCCTCCCGCTTCTCCCCCCCCATGGTGTGG CGGCGGCTACAGCCGCACCATCCGCTAGAAGACCATCGCCGTTGCCGCAA GCGCTTTTACACTTGCGGCGCGATGATCGCCTTTCCTCGGGAGGAGCGGC AGGATTGATCCCTGCGCACGACGGGCGTTGGCGTCGTCGGCGACGGTCTG AGGCGCTGATAGCACGGAGGATAAAGCGGGGGAGTCAGGAATCAGAGGGC GGCAGCTAGAGGCGGCAGCTAGAGGAGGATAACGGCGGTGCTAGTGTTGC TTTCGGCGGCGCGGCTGAAGGGTGGGAGGAAGAAGAGCGCGAGCCAAAGG CAGAAGACGGCGGAGCTCCATTGGGCCTCCTCTCTGAGTTCAGCGACGAC GATGACGACGGTGCGGAGGGAGATGATTTCCTGGGGACGGAGGAGGAGGA GCACAGCGCACCCGGCGCGGACTAAGGCGAGGGGGGCGTGGACGAGATAC TGCGATTGCAGATGGAGGACCCTTCCATGATGCGCCCTTCTCGCCGCATC GCGAGGTCCGGCATGGCTTCCCGTCGAGAGGCCGAGCGCCTGGTGGAGGC GGGGGTGGTGACGGTGAACGGAACACCGGTGCAGACCCCGGCGCTGAACG TGGGGCTCCGAGACATCGTCAAAGTCAAGGTTAGGTTAGTTTCTTTGTTA TCGTTTTGATTTAGGCACAGTAGGCAGGGTACAGAGCGGGCCGGCACTCC GCTCAGTGGTATGCGCCCAATCAGATTGGATCAAGATCGATCCGTTGATC AGCCAAATGAAACATATATATATTTCAGTATAGGGTTTAAGCATCTACGC CAGCCAGGCTGTTGAGCAAATCCCGCCACCTTATTTGATTGGTTGCCTGT TTGCATGTTTGTGTGTCGGACCGTTCCGTGTTCGTTTTTTTGGCGTGTTT TTTGTTAATCGTTTGTTGTCGATTTGGATGTTGATGGCCACCAGGGGAGA GCACTGGAGCGGCCGGAGGACCACACGCTCGAACTGTGGATGGCGCACAA GACTAGGCGCGAGCTTGTCACGAGGCACGATTCGACAGGCCGGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13588:3023..4218+

>mRNA_L-elsbetiae_contig13588.2726.1 ID=mRNA_L-elsbetiae_contig13588.2726.1|Name=mRNA_L-elsbetiae_contig13588.2726.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig13588:3023..4218+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGACCCTTCCATGATGCGCCCTTCTCGCCGCATCGCGAGGTCCGG
CATGGCTTCCCGTCGAGAGGCCGAGCGCCTGGTGGAGGCGGGGGTGGTGA
CGGTGAACGGAACACCGGTGCAGACCCCGGCGCTGAACGTGGGGCTCCGA
GACATCGTCAAAGTCAAGATGGAGGACCCTTCCATGATGCGCCCTTCTCG
CCGCATCGCGAGGTCCGGCATGGCTTCCCGTCGAGAGGCCGAGCGCCTGG
TGGAGGCGGGGGTGGTGACGGTGAACGGAACACCGGTGCAGACCCCGGCG
CTGAACGTGGGGCTCCGAGACATCGTCAAAGTCAAGGGGAGAGCACTGGA
GCGGCCGGAGGACCACACGCTCGAACTGTGGATGGCGCACAAGACTAGGC
GCGAGCTTGTCACGAGGCACGATTCGACAGGCCGGTGGGGGAGAGCACTG
GAGCGGCCGGAGGACCACACGCTCGAACTGTGGATGGCGCACAAGACTAG
GCGCGAGCTTGTCACGAGGCACGATTCGACAGGCCGGTGG
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