mRNA_L-elsbetiae_contig1356.2715.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1356.2715.1 vs. uniprot
Match: D7FZV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV6_ECTSI) HSP 1 Score: 127 bits (320), Expect = 3.070e-32 Identity = 89/207 (43.00%), Postives = 112/207 (54.11%), Query Frame = 3 Query: 51 IQLLGFLCESNLLSDELGAVDCASIALRDETASDHDGYHDSYESILERSRPEHEGTLAGADFEVGIIPAFMAALLAVTGVVLVRKRRKRAHRQSTYFSRCDKRSKSDRPGVRYYRQVGHANNDDVLSVEGEDAYGEDRSPGDGFAGGVNHSDDDAGFSAXXXXXXXXXXXXXXXXRRGRQRGRGFREAASNIVAKVLSGGVDRTPAS 671 + LLGFLCESNLL +ELG V+C SI +RDE +S G H + EH ++++RAHRQ YFSR ++K+++PGVRYYR+V H +NDDVLS+EGED+YG+ SPG FAG SDDD GF R+ GFREAASNIVA+VLSGG D+ P S Sbjct: 1 MNLLGFLCESNLLGEELGKVECESITVRDEFSS---GEH----------QEEH-----------------------------YERKKRRAHRQRNYFSR---KNKTNKPGVRYYRKVLHVDNDDVLSIEGEDSYGQVHSPGS-FAGDFT-SDDDRGFGPDAP----------------RRPSGGFREAASNIVARVLSGGADQRPVS 144
BLAST of mRNA_L-elsbetiae_contig1356.2715.1 vs. uniprot
Match: A0A6H5L3W1_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W1_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.940e-19 Identity = 85/220 (38.64%), Postives = 110/220 (50.00%), Query Frame = 3 Query: 3 MAAAPAPWEERSPKEVIQLLGFLCESNLLSDELGAVDCASIALRDETASDHDGYHDSYESILERSRPEHEGTL-AGADFEVGIIPAFMAALLAVTGVVLVRKRRKRAHRQSTYFSRCDKRSKSDRPGVRYYRQVGHANNDDVLSVEGEDAYGEDRSPGDGFAGGVNHSDDDAGFSAXXXXXXXXXXXXXXXXRRGRQRGRGFREAASNIVAKVLSGGVDR 659 MA A W+ERSP+E + LLGFLCES+LLS+ELG V+C SI +RDE +S + YESIL R R +++G L G ++V I + M ALL + G V++R H + RP + RQV SPG FAGG SDDD GF R+ GFR+AASNIVA+VLSGG ++ Sbjct: 1314 MAPAATAWQERSPRENMNLLGFLCESDLLSEELGKVECESITVRDEFSSGEQ-QEEHYESILGRDRSDNQGFLDGGRSYKVAAIASVMVALL-LGGAVVIRLITNVTHVPTA------------RPFL--VRQV--------------------HSPGS-FAGGFT-SDDDRGFGRDAP----------------RRPSGGFRDAASNIVARVLSGGANQ 1479 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1356.2715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1356.2715.1 >prot_L-elsbetiae_contig1356.2715.1 ID=prot_L-elsbetiae_contig1356.2715.1|Name=mRNA_L-elsbetiae_contig1356.2715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp MAAAPAPWEERSPKEVIQLLGFLCESNLLSDELGAVDCASIALRDETASDback to top mRNA from alignment at L-elsbetiae_contig1356:16847..26720- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1356.2715.1 ID=mRNA_L-elsbetiae_contig1356.2715.1|Name=mRNA_L-elsbetiae_contig1356.2715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9874bp|location=Sequence derived from alignment at L-elsbetiae_contig1356:16847..26720- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1356:16847..26720- >mRNA_L-elsbetiae_contig1356.2715.1 ID=mRNA_L-elsbetiae_contig1356.2715.1|Name=mRNA_L-elsbetiae_contig1356.2715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig1356:16847..26720- (Laminarionema elsbetiae ELsaHSoW15)back to top |