mRNA_L-elsbetiae_contig1356.2714.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1356.2714.1
Unique NamemRNA_L-elsbetiae_contig1356.2714.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1356.2714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1356contigL-elsbetiae_contig1356:2524..2874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.1333613-CDS-L-elsbetiae_contig1356:2523..28591622815523.1333613-CDS-L-elsbetiae_contig1356:2523..2859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1356 2524..2859 +
1691682939.6583483-CDS-L-elsbetiae_contig1356:2523..28591691682939.6583483-CDS-L-elsbetiae_contig1356:2523..2859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1356 2524..2859 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.14557-UTR-L-elsbetiae_contig1356:2859..28741622815523.14557-UTR-L-elsbetiae_contig1356:2859..2874Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1356 2860..2874 +
1691682939.669201-UTR-L-elsbetiae_contig1356:2859..28741691682939.669201-UTR-L-elsbetiae_contig1356:2859..2874Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1356 2860..2874 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1356.2714.1prot_L-elsbetiae_contig1356.2714.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1356 2524..2859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1356.2714.1

>prot_L-elsbetiae_contig1356.2714.1 ID=prot_L-elsbetiae_contig1356.2714.1|Name=mRNA_L-elsbetiae_contig1356.2714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
TRTSYEQHIAPPLVCLVWDGLCELLGLAQWCPRDHKRAGAFGGGGGFCLR
VPDELVIGVNHPPAAARASIFFVLFPTPSRSTGATDLFFLRRQHGTVAAR
TRSKGAKQVPP*
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mRNA from alignment at L-elsbetiae_contig1356:2524..2874+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1356.2714.1 ID=mRNA_L-elsbetiae_contig1356.2714.1|Name=mRNA_L-elsbetiae_contig1356.2714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=351bp|location=Sequence derived from alignment at L-elsbetiae_contig1356:2524..2874+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCGTACTAGCTATGAGCAGCATATCGCGCCCCCTCTAGTGTGTTTGGT
CTGGGATGGGTTGTGTGAGCTCCTAGGGCTGGCGCAGTGGTGTCCGCGAG
ACCATAAGAGGGCGGGGGCTTTTGGTGGGGGGGGTGGTTTTTGTCTGCGA
GTTCCCGACGAACTTGTGATCGGTGTAAATCATCCTCCCGCCGCGGCTAG
AGCATCGATTTTCTTCGTTCTTTTTCCCACACCCTCGAGAAGTACAGGAG
CTACAGACCTGTTCTTTCTTCGCCGCCAACACGGCACTGTTGCGGCGAGA
ACTCGAAGTAAAGGAGCGAAACAAGTGCCCCCTTAAAAAATTAATCCAAA
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1356:2524..2874+

>mRNA_L-elsbetiae_contig1356.2714.1 ID=mRNA_L-elsbetiae_contig1356.2714.1|Name=mRNA_L-elsbetiae_contig1356.2714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1356:2524..2874+ (Laminarionema elsbetiae ELsaHSoW15)
ACCCGTACTAGCTATGAGCAGCATATCGCGCCCCCTCTAGTGTGTTTGGT
CTGGGATGGGTTGTGTGAGCTCCTAGGGCTGGCGCAGTGGTGTCCGCGAG
ACCATAAGAGGGCGGGGGCTTTTGGTGGGGGGGGTGGTTTTTGTCTGCGA
GTTCCCGACGAACTTGTGATCGGTGTAAATCATCCTCCCGCCGCGGCTAG
AGCATCGATTTTCTTCGTTCTTTTTCCCACACCCTCGAGAAGTACAGGAG
CTACAGACCTGTTCTTTCTTCGCCGCCAACACGGCACTGTTGCGGCGAGA
ACTCGAAGTAAAGGAGCGAAACAAGTGCCCCCTTAAACCCGTACTAGCTA
TGAGCAGCATATCGCGCCCCCTCTAGTGTGTTTGGTCTGGGATGGGTTGT
GTGAGCTCCTAGGGCTGGCGCAGTGGTGTCCGCGAGACCATAAGAGGGCG
GGGGCTTTTGGTGGGGGGGGTGGTTTTTGTCTGCGAGTTCCCGACGAACT
TGTGATCGGTGTAAATCATCCTCCCGCCGCGGCTAGAGCATCGATTTTCT
TCGTTCTTTTTCCCACACCCTCGAGAAGTACAGGAGCTACAGACCTGTTC
TTTCTTCGCCGCCAACACGGCACTGTTGCGGCGAGAACTCGAAGTAAAGG
AGCGAAACAAGTGCCCCCTTAA
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