mRNA_L-elsbetiae_contig13555.2713.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13555.2713.1
Unique NamemRNA_L-elsbetiae_contig13555.2713.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13555.2713.1 vs. uniprot
Match: D8LHF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF1_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 4.490e-32
Identity = 102/123 (82.93%), Postives = 106/123 (86.18%), Query Frame = 2 
Query:  206 LSLACRKLPPMRIIALPQRLTKLHFQGGFPEGFLDNAAFPPSLKDLCLGDGFNEGVQGVLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFFFSNHVPLYSVAWPKGCVVRAAGSTMCR 574
            LSL CR LP +R   L  RL KLHFQGGFP GFLDNAAFP SLK+L LGDGFNEG+QGV WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QFFFSNHVPL SVAWP+GC VRAAGSTM R
Sbjct:  667 LSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTGFLDNAAFPASLKELSLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQFFFSNHVPLQSVAWPRGCEVRAAGSTMSR 789
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BLAST of mRNA_L-elsbetiae_contig13555.2713.1 vs. uniprot
Match: A0A6H5JL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL40_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.960e-26
Identity = 95/123 (77.24%), Postives = 98/123 (79.67%), Query Frame = 2 
Query:  206 LSLACRKLPPMRIIALPQRLTKLHFQGGFPEGFLDNAAFPPSLKDLCLGDGFNEGVQGVLWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQFFFSNHVPLYSVAWPKGCVVRAAGSTMCR 574
            LSL CR LP +R   L  RL KLHFQGGFP GFLDNAAFP SLK+L LGDGFNEG+QGV WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  QFFFSNHVPL        C VRAAGSTM R
Sbjct:  630 LSLVCRVLPLLRRTPLSPRLIKLHFQGGFPTGFLDNAAFPASLKELTLGDGFNEGLQGVRWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGQFFFSNHVPLQXXXXXXXCEVRAAGSTMSR 752
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13555.2713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHF1_ECTSI4.490e-3282.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL40_9PHAE3.960e-2677.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13555contigL-elsbetiae_contig13555:3013..4929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size943
Cds size609
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13555.2713.1prot_L-elsbetiae_contig13555.2713.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13555 3345..4929 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.0510154-UTR-L-elsbetiae_contig13555:3012..33441622815523.0510154-UTR-L-elsbetiae_contig13555:3012..3344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13555 3013..3344 -
1691682939.5953817-UTR-L-elsbetiae_contig13555:3012..33441691682939.5953817-UTR-L-elsbetiae_contig13555:3012..3344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13555 3013..3344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815523.0669303-CDS-L-elsbetiae_contig13555:3344..35471622815523.0669303-CDS-L-elsbetiae_contig13555:3344..3547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13555 3345..3547 -
1691682939.610748-CDS-L-elsbetiae_contig13555:3344..35471691682939.610748-CDS-L-elsbetiae_contig13555:3344..3547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13555 3345..3547 -
1622815523.0825856-CDS-L-elsbetiae_contig13555:3782..39271622815523.0825856-CDS-L-elsbetiae_contig13555:3782..3927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13555 3783..3927 -
1691682939.6266046-CDS-L-elsbetiae_contig13555:3782..39271691682939.6266046-CDS-L-elsbetiae_contig13555:3782..3927Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13555 3783..3927 -
1622815523.0963442-CDS-L-elsbetiae_contig13555:4668..49291622815523.0963442-CDS-L-elsbetiae_contig13555:4668..4929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13555 4669..4929 -
1691682939.6454422-CDS-L-elsbetiae_contig13555:4668..49291691682939.6454422-CDS-L-elsbetiae_contig13555:4668..4929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13555 4669..4929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13555.2713.1

>prot_L-elsbetiae_contig13555.2713.1 ID=prot_L-elsbetiae_contig13555.2713.1|Name=mRNA_L-elsbetiae_contig13555.2713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
AGLWERLQQAHCAGPLAPPPPGNPVRPQLQPIPGRRFVAGIASRCFSRLG
VRPPSGCRWRGVARDARVAVSCLPQASPDEDHCSSSEADEASLPGRLSGG
LLGQRGVSSIPQGSVSRRRLQRGSAGGALAARAREADVRAHLQAVRGQRG
VAEGHRAARLRTVLFQQPRSPVQRGVAQGVRGPRGGLHHVPPVNTRAGNC
RS*
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mRNA from alignment at L-elsbetiae_contig13555:3013..4929-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13555.2713.1 ID=mRNA_L-elsbetiae_contig13555.2713.1|Name=mRNA_L-elsbetiae_contig13555.2713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1917bp|location=Sequence derived from alignment at L-elsbetiae_contig13555:3013..4929- (Laminarionema elsbetiae ELsaHSoW15)
GCTGGCCTTTGGGAAAGGCTTCAACAAGCCCATTGCGCGGGCCCACTGGC
CCCGCCGCCTCCAGGAAATCCGGTTCGGCCGCAGCTTCAGCCAATACCTG
GGAGGCGTTTCGTGGCCGGGATCGCTTCGCGTTGTTTCTCTCGGCTGGGA
GTTCGACCACCCTCTGGATGCCGGTGGCGTGGAGTGGCCCGAGATGCTCG
AGTCGCTGTCTCTTGCCTGCCGCAAGCTTCCCCCGATGAGGATCATTGCT
CTTCCTCAGAGGTACATACGTATATGTTGTTGACAGTGCCGCTTACAGTC
CCGTCGTTGAAGTGGCCCGGGATGCTTGAGTCGCTGTCTCTTGTGCCTGC
CGGAAGCTTCCCCCGATGAGGCGCATTGCTTTCCCTCAGAGGTACATAAT
TGTTGACTGTCAGCGTGACAGTCCCGTTGTTGTTTGTTGGTGTTGTTGTT
GGTGTTGTTGGTGTTCGTGTTGTTGCTGCTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTTTTGTTGTTCTTGATGTTGTGGCTGGTTTTGCTGCTG
CTGCTGTTGTTGTTGTTGTTGTGGATGTTGCTGCCTTTGCTGCAGCTGCT
GTTTTGGTTACGGCTGTTCTCTCTGGCTCCTGCTTCCAGTCGATGTTTCA
TTTTCGCCGTTGGCGACGGCGAAAGCCCCGGAGCGTCTCTACCCAATCAC
CTTGCCAGCCAGTCACCCGAAAAGTCTGCTGCCCAGCCTATAACTCCCTC
TACCCTTCCCACGCTTGTCTTTCGGAACCAGCTCACTCTCCCGTTCTCAC
GCTTGTCTTTTGGAACCAACTCACTCTCCCCTCCCGGCGCTTGTCTATCC
TTCCCACGCTTGTCTTTTGGAAGCAATTCCCTCTACCCTTCCCACGCTTG
TGGTTTCGAACCAATTCACTACCCGTTCCCACGCTTCGTCTTCTCGAACC
GACTGCTGTCCCATATATATATATGTATATATAATATATATATTACATCC
AGGCTGACGAAGCTTCACTTCCAGGGAGGCTTTCCGGAGGGCTTCTTGGA
CAACGCGGCGTTTCCTCCATCCCTCAAGGATCTGTGTCTCGGAGACGGCT
TCAACGAGGGAGTGCAGGGGGTGCTCTGGCCGCCAGGGCTCGAGAAGGTG
AGGGTGCCCGTTATTGTTGACAGTCCCGCGACATTCCCGTTGTTGTTGTT
GTTGTTGCTGTTGTTGTTGTTGTTTCCCCTCCTGCGGTGGCGGTAAAAGC
CCCCCTCCGTGCACACATTACCTAGACACTGACGGACCCCCGTTGTGTGC
CTTTTCCGGCTCGCTGAACCTGTGTCCGTCCTCAACCAACTGCTGGGCTC
TTCTCTTCGTGTGGGGCACTTTCTTCCCCAAGCTGACGTTCGGGCGCACC
TACAAGCAGTGCGTGGACAGCGTGGAGTGGCCGAGGGGCATCGAGCAGCT
CGTCTTCGGACAGTTCTTTTTCAGCAACCACGTTCCCCTGTACAGCGTGG
CGTGGCCCAAGGGGTGCGTGGTCCGCGCGGCGGGCTCCACCATGTGCCGC
CCGTGAACACCCGGGCGGGGAATTGCCGCTCTTGAACACCGCGCGCGGTA
TTGGGAAAGTTGTATCGCGACACAATTACGATAATACGGGAACCGGGCAG
ACAACCCCGTCGCGTCAGCTCTCTCTTCGAACATACTTTCTTTGTATGCG
TACCAGGTAACAAAGATGGGAAACTCCCTGCACTGAATGAAGGCGGGGCT
CCGTTCTCACACACCGTCAGAAAGTAGGCTCCGCTCTCACTACAAGAAGT
ACGTATGTAAAAGGCGTGTTGAAAACCTCGGCACAGGTACTGTTGTGCGT
CAAATGTATTTGTGCCGCGCACATACGTAGCATCTCTCATCATGTGCGTT
TGGATCAAAGCCTAGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13555:3013..4929-

>mRNA_L-elsbetiae_contig13555.2713.1 ID=mRNA_L-elsbetiae_contig13555.2713.1|Name=mRNA_L-elsbetiae_contig13555.2713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig13555:3013..4929- (Laminarionema elsbetiae ELsaHSoW15)
GCTGGCCTTTGGGAAAGGCTTCAACAAGCCCATTGCGCGGGCCCACTGGC
CCCGCCGCCTCCAGGAAATCCGGTTCGGCCGCAGCTTCAGCCAATACCTG
GGAGGCGTTTCGTGGCCGGGATCGCTTCGCGTTGTTTCTCTCGGCTGGGA
GTTCGACCACCCTCTGGATGCCGGTGGCGTGGAGTGGCCCGAGATGCTCG
AGTCGCTGTCTCTTGCCTGCCGCAAGCTTCCCCCGATGAGGATCATTGCT
CTTCCTCAGAGGCTGGCCTTTGGGAAAGGCTTCAACAAGCCCATTGCGCG
GGCCCACTGGCCCCGCCGCCTCCAGGAAATCCGGTTCGGCCGCAGCTTCA
GCCAATACCTGGGAGGCGTTTCGTGGCCGGGATCGCTTCGCGTTGTTTCT
CTCGGCTGGGAGTTCGACCACCCTCTGGATGCCGGTGGCGTGGAGTGGCC
CGAGATGCTCGAGTCGCTGTCTCTTGCCTGCCGCAAGCTTCCCCCGATGA
GGATCATTGCTCTTCCTCAGAGGCTGACGAAGCTTCACTTCCAGGGAGGC
TTTCCGGAGGGCTTCTTGGACAACGCGGCGTTTCCTCCATCCCTCAAGGA
TCTGTGTCTCGGAGACGGCTTCAACGAGGGAGTGCAGGGGGTGCTCTGGC
CGCCAGGGCTCGAGAAGGCTGACGAAGCTTCACTTCCAGGGAGGCTTTCC
GGAGGGCTTCTTGGACAACGCGGCGTTTCCTCCATCCCTCAAGGATCTGT
GTCTCGGAGACGGCTTCAACGAGGGAGTGCAGGGGGTGCTCTGGCCGCCA
GGGCTCGAGAAGCTGACGTTCGGGCGCACCTACAAGCAGTGCGTGGACAG
CGTGGAGTGGCCGAGGGGCATCGAGCAGCTCGTCTTCGGACAGTTCTTTT
TCAGCAACCACGTTCCCCTGTACAGCGTGGCGTGGCCCAAGGGGTGCGTG
GTCCGCGCGGCGGGCTCCACCATGTGCCGCCCGTGAACACCCGGGCGGGG
AATTGCCGCTCTTGACTGACGTTCGGGCGCACCTACAAGCAGTGCGTGGA
CAGCGTGGAGTGGCCGAGGGGCATCGAGCAGCTCGTCTTCGGACAGTTCT
TTTTCAGCAACCACGTTCCCCTGTACAGCGTGGCGTGGCCCAAGGGGTGC
GTGGTCCGCGCGGCGGGCTCCACCATGTGCCGCCCGTGAACACCCGGGCG
GGGAATTGCCGCTCTTGA
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