mRNA_L-elsbetiae_contig13553.2712.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13553.2712.1
Unique NamemRNA_L-elsbetiae_contig13553.2712.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig13553.2712.1 vs. uniprot
Match: D8LEB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB9_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.460e-15
Identity = 43/79 (54.43%), Postives = 53/79 (67.09%), Query Frame = 3 
Query:   30 KAAAKKMGWSEFRTVQACFGFWFDVSREDGVVYKFTSCANYFNEGA--STRTLRDAEKKRLLAVLDTVSAIPKTKVDSS 260
            + A K+ G   F  V ACFGFWFDV ++DG+ YKF SCANYFN+G   +TR L   ++K LLA L TVSAIPK   + S
Sbjct:   79 RKAKKRKGVPNFSVVDACFGFWFDVCKDDGLEYKFKSCANYFNDGTGRTTRQLAKEQEKSLLAALHTVSAIPKDSEEDS 157
[Close]
BLAST of mRNA_L-elsbetiae_contig13553.2712.1 vs. uniprot
Match: A0A6H5K5L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5L1_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.150e-10
Identity = 60/209 (28.71%), Postives = 75/209 (35.89%), Query Frame = 3 
Query:  348 EKKAPACKGTVKKNNAPCSNQARDGTPFCRKHQSKATSRPAAIVVSDSGSXXXXXXDLGFWVDGDYYKYSDYGSKCTKPRPTVPKKRKTEVARKPEAHKNCKNAKTVAGEYRRCEGIVGTTGDDCTAPPQGGSKYCGRHQSQG----------------------ICLARVKDHGLRCEYKHYEGSRWCGVHFPEWHGKDTPKW*NRPW 908
            +K + AC+G ++++  PC N+ RD T FCR+HQ KAT   A         XXXXXX                                                     E   C   +   G  C     G S++C  H+                         ICLA V   GLRC YK Y  SRWCG H  EWHG+D+P W   PW
Sbjct:   16 KKPSVACQG-MQQSGVPCGNKTRDDTQFCRRHQPKATKTRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------XEMESPICLARMPVFGLRCNMMCFGESRFCTEHRPMWHQKDSPIWDLPPATMVPDSDPTICLAWVASTGLRCSYKRYGPSRWCGEHCKEWHGQDSPAWRPCPW 191
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13553.2712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEB9_ECTSI1.460e-1554.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5L1_9PHAE3.150e-1028.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13553contigL-elsbetiae_contig13553:1138..4972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1088
Cds size870
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13553.2712.1prot_L-elsbetiae_contig13553.2712.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13553 1164..4780 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.917454-UTR-L-elsbetiae_contig13553:1137..11631622815522.917454-UTR-L-elsbetiae_contig13553:1137..1163Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13553 1138..1163 +
1691682939.5143461-UTR-L-elsbetiae_contig13553:1137..11631691682939.5143461-UTR-L-elsbetiae_contig13553:1137..1163Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13553 1138..1163 +
1622815523.0108743-UTR-L-elsbetiae_contig13553:4780..49721622815523.0108743-UTR-L-elsbetiae_contig13553:4780..4972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13553 4781..4972 +
1691682939.584056-UTR-L-elsbetiae_contig13553:4780..49721691682939.584056-UTR-L-elsbetiae_contig13553:4780..4972Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13553 4781..4972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.9327326-CDS-L-elsbetiae_contig13553:1163..12541622815522.9327326-CDS-L-elsbetiae_contig13553:1163..1254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 1164..1254 +
1691682939.5235813-CDS-L-elsbetiae_contig13553:1163..12541691682939.5235813-CDS-L-elsbetiae_contig13553:1163..1254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 1164..1254 +
1622815522.944088-CDS-L-elsbetiae_contig13553:1496..17361622815522.944088-CDS-L-elsbetiae_contig13553:1496..1736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 1497..1736 +
1691682939.5330188-CDS-L-elsbetiae_contig13553:1496..17361691682939.5330188-CDS-L-elsbetiae_contig13553:1496..1736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 1497..1736 +
1622815522.9580681-CDS-L-elsbetiae_contig13553:2797..28931622815522.9580681-CDS-L-elsbetiae_contig13553:2797..2893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 2798..2893 +
1691682939.5465183-CDS-L-elsbetiae_contig13553:2797..28931691682939.5465183-CDS-L-elsbetiae_contig13553:2797..2893Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 2798..2893 +
1622815522.9697587-CDS-L-elsbetiae_contig13553:3241..34691622815522.9697587-CDS-L-elsbetiae_contig13553:3241..3469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 3242..3469 +
1691682939.5558226-CDS-L-elsbetiae_contig13553:3241..34691691682939.5558226-CDS-L-elsbetiae_contig13553:3241..3469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 3242..3469 +
1622815522.9814804-CDS-L-elsbetiae_contig13553:3976..40691622815522.9814804-CDS-L-elsbetiae_contig13553:3976..4069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 3977..4069 +
1691682939.5644655-CDS-L-elsbetiae_contig13553:3976..40691691682939.5644655-CDS-L-elsbetiae_contig13553:3976..4069Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 3977..4069 +
1622815522.9992125-CDS-L-elsbetiae_contig13553:4658..47801622815522.9992125-CDS-L-elsbetiae_contig13553:4658..4780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 4659..4780 +
1691682939.5740798-CDS-L-elsbetiae_contig13553:4658..47801691682939.5740798-CDS-L-elsbetiae_contig13553:4658..4780Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13553 4659..4780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13553.2712.1

>prot_L-elsbetiae_contig13553.2712.1 ID=prot_L-elsbetiae_contig13553.2712.1|Name=mRNA_L-elsbetiae_contig13553.2712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp
MKAAAKKMGWSEFRTVQACFGFWFDVSREDGVVYKFTSCANYFNEGASTR
TLRDAEKKRLLAVLDTVSAIPKTKVDSSNKPKQPKPTAQKKRKEAAASNR
EKAKKVAEKKAPACKGTVKKNNAPCSNQARDGTPFCRKHQSKATSRPAAI
VVSDSGSDSDSDSDLGFWVDGDYYKYSDYGSKCTKPRPTVPKKRKTEVAR
KPEAHKNCKNAKTVAGEYRRCEGIVGTTGDDCTAPPQGGSKYCGRHQSQG
ICLARVKDHGLRCEYKHYEGSRWCGVHFPEWHGKDTPKW*
back to top

mRNA from alignment at L-elsbetiae_contig13553:1138..4972+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13553.2712.1 ID=mRNA_L-elsbetiae_contig13553.2712.1|Name=mRNA_L-elsbetiae_contig13553.2712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3835bp|location=Sequence derived from alignment at L-elsbetiae_contig13553:1138..4972+ (Laminarionema elsbetiae ELsaHSoW15)
ACCACGCCAAGACCCTCCGCTACGGGATGAAGGCAGCGGCAAAGAAGATG
GGGTGGAGCGAGTTCCGCACGGTGCAGGCCTGCTTCGGGTTCTGGTTTGA
CGTGAGCAGGGAAGATGGTGAGCTATTTACTATTCACCAAATGAACGGCT
GCCGTAGCTGACTCAAAACGGGCACACCCGCAACTACCACGTGTTTCCGA
ATACAAACATTGTTGACGTACATAGTGCACTTCCATTGTGCGATATTTTC
CCAACGTAATAACCGTTCTCTGTTCGGACAAGAGCATCTGAAGCAGAGAG
GTGTTTGTAACAAATCTGTTAGAAATGTTCGCTTCTTTGCATATCACCGA
CCGACTCAGGCGTGGTCTACAAGTTCACGTCCTGCGCCAACTACTTCAAC
GAGGGCGCTTCAACTCGCACACTCAGAGACGCCGAGAAGAAACGCCTGCT
GGCCGTTCTCGACACGGTGTCCGCGATTCCTAAAACCAAGGTCGACAGCT
CCAACAAGCCTAAGCAGCCCAAGCCAACTGCGCAGAAGAAGCGCAAGGAG
GCGGCGGCTAGCAACCGCGAGAAGGCGAAGAAGGTGGCGGAAAAGAAGGG
TGAGTGTCAGCGAAGATACAGCTAGCACACACGTAAATACAACATGAGCC
TCTGGTGAGAGGTTACATACCGGTAGATGCCCTTTACCCGTACATGACAG
ACGATATATCGTGAAAAATGGTGGGTGTAACCCTCCACCGTAGGCGGCGC
AGCTCCCTTTATTGTTACCCTCCGTCCTTGGAAAAGGCTTTTAGGGTCTT
GGCGTTTCTTAGGGATTGCATTTGATTTACTGGTTTGCATGCGTGTGCGG
TTGTCTGAGGAAGATACGTCTGTCTCCACATCCCTCCCATCCTTTTTAGC
CGAAAGTCGTTTTGAGACTAACGACTGCCGGCGTATCCAAATTTTCTAGA
TGTTCCGCGTATGCCTGTCATCCACACACCAGCTTGAAAGTGTTATATAG
AAGTAGTTAGAAGCGTATGATGTAAAGCACAACTGACGGAAAGACGCTGG
CCTCTACCGTAGTCAGCATGTACTTTTTCGACGTATTCTTGGTGTAAATA
TTGAATATTGGCTTTGGATCAGGCGTCCAGCGCAAAGGCCGGTGACAGCA
TGGATGCCCTGCCGCATCAGCTCTGCGGAGCATTGCAAACGGCATAACGT
CCAAGCTACCATGCAGTCAGTCGGGCGGGTGGGTGGGTGGTCGCGAAATG
GTTTCTCCCGAGCCTGTGTTCTTCCGGGTTTTGTGGCAGGGAAGGTAGAC
ACACACTTTCGGGGTAAGCGCCGACCTTGACTGATCATATCAATAATAGA
TTCGTCGGAGCCCCGTTTTGCCCATGACAACAGCGGTGTGTCGTGAAAGC
AAAAATACGTTCGTTCTTGATGGCGATGGTTGCCGGTATGAAACGCTGAT
GCTCTCCGCGGAGTCCGTACATACAAAACTTCCTTTGGTTCCGAGCACGT
TGCAGAGTACTTGCTGATCTACCTGACCACACTTGAGGCGGGAATCTGTC
CAAGCCGATGATATGCGCCACAGTAAGTATCACATTTTGCGCCTCACCTC
GCCTTCTACCTCTCTCTTCCCACCCTCCTCGCTCCTTCCGGTGCATTACT
GCCGCATCAGCTCCTGCGTGCAAGGGAACTGTCAAGAAGAACAATGCTCC
CTGCTCCAACCAAGCGCGCGACGGCACTCCGTTTTGCCGAAAGCACCAGT
CCAAAGGTATTGTATTCGGCGACAATCTTCGAACAGGCCTGTTGCTTCGT
AGTATGTACGGTGGGGCTGTAGCCACTTTTGTGGGGATAAAGAGCCGTGA
CGTTTTGAAGCGGTGCTGGATAAATAATTCAACCCGGGTTCATTCGTGCC
AGGATATGCGCCGCACAGGCAAGCACCTCATCATTTGTAACCTAGTAAAT
GGCATCTCCTTCCTCGACATTCGGGATTCAAGCACGTTGACGTGGTGCAA
GCATCTTGCTCCGCCTATTCACCTTGCACGCGTAACCCACCTAGCTGTAG
ACTCACGCGACGCGTGCCTGTCGTCTCTGTGCTAACAACAACGTACGGCA
GCAGCAACGAGTCGTCCCGCCGCCATCGTCGTGAGCGACTCGGGCAGCGA
CAGCGACAGCGACAGCGACTTGGGCTTCTGGGTCGATGGCGACTACTACA
AATACAGCGACTACGGCAGCAAGTGTACGAAGCCCAGGCCAACGGTGCCC
AAGAAGCGCAAGACGGAGGTGGCCAGGAAGCCCGAGGCGCACAAAAACTG
CAAGAACGCGAAGACGGTGGCTGGAGAATACCGTGAGTGCGTCTATCTGA
AAAGACATGTACGTTTGTATGTAGATGCAACAAGCCCTTTTGCGAGAAAA
TGGCACGGAGAGATCCGAGGGGATAAGTGTGGGGGTGGTTGATTTTCAAC
ACTAGAGGAAAATTGGAGCATATTGTTATGGTCGCGCATGGCACGACATG
TTGAGACGTTCCCAGTGTTCTATTGAGGAATATACAAATAGGTGTGCTAG
TTACGCAGCGATCAGTTGTACAGCAGGGGTGGTAATACGTGAAATCAGCG
CAAATTGTGCGCTCTGCATCGTAGTACAGCAACGCACATCGAACCCGTTG
GACTGAAAAAAACAGCTGCCCAGGGAGCATGGTGTTTGAGAAGCTGAGTG
TTGTGTCGATATTTGTAGTCATGTGCGCAATGCACCACTGCATTGCAGGG
TACTCGACGTTGGAAGAGTTGATCTTCGCATCAGTCAGAATGGATTTGAC
GTTTTTTGCGTCCCTCTTGTGTTTACGCCACTACCACAGGTCGATGCGAG
GGAATCGTCGGGACCACCGGGGACGATTGCACGGCCCCACCCCAGGGTGG
CTCCAAGTACTGTGGGCGCCACCAAAGCCAAGGTATACGGCAGTGCAGCT
CGTGCAGCTCGTCTGTCTTTGTCTGATGGCTATTCGATGGAACAGGGGTC
TCAAGAGAGTTGAACCCAGTTTTTGAGCGAATCATTGAGGTCACCACAGC
CTGCGCGTGGGCTGCAAGATAGCAGAACTCTGCATCCGCTGTCCGTCCTG
CCGAGCGCTGCCAGCATAAGGATGGATTACGATATTTTTGTTCGTAGAGC
CTGGTCAGCTAAATACGTGTCAGCTACATAGGTGTCCCCCAAAATCTAAC
AGGTAACTCCATCCCCGCAAAGCAACAGCGCATACTTCTACATGTGGCGT
TCATTGACAGGATTACTTAGTACCTGGTATACACACATATTTCTCTGCAT
AGAAAACCTCAGGCCTGAACATTGATTGCCCTTGAAGAAAAAGCATCATA
GCAAGCACAGGCAAACACAGACAAACCCGGCTCGCTGCCTCCGCAGACCC
TAGACAGGCATGAAATCCTCCAGCTTCAAGGATTGTTCGTGCTTGTTTCG
TCCTTGATAAATATAATATGGTTGTCTTTCCTCCTCGTTTCCCGCCGTTC
GACTATGCCCGTGTCTTGCAGGAATCTGCCTGGCTAGGGTCAAAGACCAC
GGATTGAGGTGCGAATACAAGCACTACGAGGGCTCCCGCTGGTGCGGTGT
ACACTTCCCCGAGTGGCACGGGAAAGACACCCCCAAGTGGTGAAACCGCC
CCTGGGAGTTCCGAGAGCCCTCAGTGCGCACCTACACTGCTATGTTGTTG
AGGAGGCCATGGTTAAAGCTGTTGCTGTAGAAGATTGCATGTTCTGTCTG
AGAGGCGTAGCTGCACTTCAGAGTCACCTCGTCCTCTTTCACAAGGCGCC
AATCGATCAACGTGGAAAACATGGGTACCGACGTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13553:1138..4972+

>mRNA_L-elsbetiae_contig13553.2712.1 ID=mRNA_L-elsbetiae_contig13553.2712.1|Name=mRNA_L-elsbetiae_contig13553.2712.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1740bp|location=Sequence derived from alignment at L-elsbetiae_contig13553:1138..4972+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGCAGCGGCAAAGAAGATGGGGTGGAGCGAGTTCCGCACGGTGCA
GGCCTGCTTCGGGTTCTGGTTTGACGTGAGCAGGGAAGATGATGAAGGCA
GCGGCAAAGAAGATGGGGTGGAGCGAGTTCCGCACGGTGCAGGCCTGCTT
CGGGTTCTGGTTTGACGTGAGCAGGGAAGATGGCGTGGTCTACAAGTTCA
CGTCCTGCGCCAACTACTTCAACGAGGGCGCTTCAACTCGCACACTCAGA
GACGCCGAGAAGAAACGCCTGCTGGCCGTTCTCGACACGGTGTCCGCGAT
TCCTAAAACCAAGGTCGACAGCTCCAACAAGCCTAAGCAGCCCAAGCCAA
CTGCGCAGAAGAAGCGCAAGGAGGCGGCGGCTAGCAACCGCGAGAAGGCG
AAGAAGGTGGCGGAAAAGAAGGGCGTGGTCTACAAGTTCACGTCCTGCGC
CAACTACTTCAACGAGGGCGCTTCAACTCGCACACTCAGAGACGCCGAGA
AGAAACGCCTGCTGGCCGTTCTCGACACGGTGTCCGCGATTCCTAAAACC
AAGGTCGACAGCTCCAACAAGCCTAAGCAGCCCAAGCCAACTGCGCAGAA
GAAGCGCAAGGAGGCGGCGGCTAGCAACCGCGAGAAGGCGAAGAAGGTGG
CGGAAAAGAAGGCTCCTGCGTGCAAGGGAACTGTCAAGAAGAACAATGCT
CCCTGCTCCAACCAAGCGCGCGACGGCACTCCGTTTTGCCGAAAGCACCA
GTCCAAAGCTCCTGCGTGCAAGGGAACTGTCAAGAAGAACAATGCTCCCT
GCTCCAACCAAGCGCGCGACGGCACTCCGTTTTGCCGAAAGCACCAGTCC
AAAGCAACGAGTCGTCCCGCCGCCATCGTCGTGAGCGACTCGGGCAGCGA
CAGCGACAGCGACAGCGACTTGGGCTTCTGGGTCGATGGCGACTACTACA
AATACAGCGACTACGGCAGCAAGTGTACGAAGCCCAGGCCAACGGTGCCC
AAGAAGCGCAAGACGGAGGTGGCCAGGAAGCCCGAGGCGCACAAAAACTG
CAAGAACGCGAAGACGGTGGCTGGAGAATACCCAACGAGTCGTCCCGCCG
CCATCGTCGTGAGCGACTCGGGCAGCGACAGCGACAGCGACAGCGACTTG
GGCTTCTGGGTCGATGGCGACTACTACAAATACAGCGACTACGGCAGCAA
GTGTACGAAGCCCAGGCCAACGGTGCCCAAGAAGCGCAAGACGGAGGTGG
CCAGGAAGCCCGAGGCGCACAAAAACTGCAAGAACGCGAAGACGGTGGCT
GGAGAATACCGTCGATGCGAGGGAATCGTCGGGACCACCGGGGACGATTG
CACGGCCCCACCCCAGGGTGGCTCCAAGTACTGTGGGCGCCACCAAAGCC
AAGGTCGATGCGAGGGAATCGTCGGGACCACCGGGGACGATTGCACGGCC
CCACCCCAGGGTGGCTCCAAGTACTGTGGGCGCCACCAAAGCCAAGGAAT
CTGCCTGGCTAGGGTCAAAGACCACGGATTGAGGTGCGAATACAAGCACT
ACGAGGGCTCCCGCTGGTGCGGTGTACACTTCCCCGAGTGGCACGGGAAA
GACACCCCCAAGTGGTGAGAATCTGCCTGGCTAGGGTCAAAGACCACGGA
TTGAGGTGCGAATACAAGCACTACGAGGGCTCCCGCTGGTGCGGTGTACA
CTTCCCCGAGTGGCACGGGAAAGACACCCCCAAGTGGTGA
back to top