mRNA_L-elsbetiae_contig13544.2708.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13544.2708.1
Unique NamemRNA_L-elsbetiae_contig13544.2708.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13544.2708.1 vs. uniprot
Match: D7G0M5_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.650e-11
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  745 ALAHCGEVNRALELMREMKEDAGIEPNENTYSAAILACGNGG 870
            ALAHCGEV+ ALEL+ EMKE+AGIEPNE TY+A ILACGNGG
Sbjct:  711 ALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGG 752
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13544.2708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0M5_ECTSI2.650e-1180.95PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13544contigL-elsbetiae_contig13544:3..4564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue6e-11
Seed eggNOG ortholog2880.D7G0M5
KEGG koko:K17710
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Exons6
Model size870
Cds size870
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13544.2708.1prot_L-elsbetiae_contig13544.2708.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13544 3..4564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.5757353-CDS-L-elsbetiae_contig13544:2..411622815522.5757353-CDS-L-elsbetiae_contig13544:2..41Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 3..41 -
1691682939.331962-CDS-L-elsbetiae_contig13544:2..411691682939.331962-CDS-L-elsbetiae_contig13544:2..41Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 3..41 -
1622815522.5882542-CDS-L-elsbetiae_contig13544:614..7591622815522.5882542-CDS-L-elsbetiae_contig13544:614..759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 615..759 -
1691682939.3454466-CDS-L-elsbetiae_contig13544:614..7591691682939.3454466-CDS-L-elsbetiae_contig13544:614..759Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 615..759 -
1622815522.5984557-CDS-L-elsbetiae_contig13544:2087..22091622815522.5984557-CDS-L-elsbetiae_contig13544:2087..2209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 2088..2209 -
1691682939.3554862-CDS-L-elsbetiae_contig13544:2087..22091691682939.3554862-CDS-L-elsbetiae_contig13544:2087..2209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 2088..2209 -
1622815522.6099453-CDS-L-elsbetiae_contig13544:2623..28181622815522.6099453-CDS-L-elsbetiae_contig13544:2623..2818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 2624..2818 -
1691682939.3638475-CDS-L-elsbetiae_contig13544:2623..28181691682939.3638475-CDS-L-elsbetiae_contig13544:2623..2818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 2624..2818 -
1622815522.621259-CDS-L-elsbetiae_contig13544:3270..35011622815522.621259-CDS-L-elsbetiae_contig13544:3270..3501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 3271..3501 -
1691682939.3742843-CDS-L-elsbetiae_contig13544:3270..35011691682939.3742843-CDS-L-elsbetiae_contig13544:3270..3501Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 3271..3501 -
1622815522.6311977-CDS-L-elsbetiae_contig13544:4426..45641622815522.6311977-CDS-L-elsbetiae_contig13544:4426..4564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 4427..4564 -
1691682939.3818464-CDS-L-elsbetiae_contig13544:4426..45641691682939.3818464-CDS-L-elsbetiae_contig13544:4426..4564Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13544 4427..4564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13544.2708.1

>prot_L-elsbetiae_contig13544.2708.1 ID=prot_L-elsbetiae_contig13544.2708.1|Name=mRNA_L-elsbetiae_contig13544.2708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=290bp
STWQVGEQWERALGFLREMPGLGVDPCVISYNTAISACAKCGRGDQALAL
LREMPSVGLAPDVISYNSAIAALGKSGQPDEAMQLMKEMPGRGLYADAIT
CSSALTALGNSGLWEEALVLLREMPAAGINPTVICYTAAIRACGEAGQSE
EALSLLREMPSAGVTANLFSYSAAISACAKSGQWEKGLALLNELPGLDPP
ITPNEFCYTAAITGCGIGGQWEQAVQTFRNMIANGVEPSVVGYTSAVSAL
AHCGEVNRALELMREMKEDAGIEPNENTYSAAILACGNGG
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mRNA from alignment at L-elsbetiae_contig13544:3..4564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13544.2708.1 ID=mRNA_L-elsbetiae_contig13544.2708.1|Name=mRNA_L-elsbetiae_contig13544.2708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4562bp|location=Sequence derived from alignment at L-elsbetiae_contig13544:3..4564- (Laminarionema elsbetiae ELsaHSoW15)
TCCACTTGGCAGGTCGGCGAGCAGTGGGAGCGGGCGCTTGGCTTTCTCCG
CGAGATGCCCGGCCTCGGCGTCGATCCGTGCGTCATCAGCTACAACACGG
CCATCTCGGCCTGCGCCAAGTGCGGGCGGGGCGACCAGGTGTGCAGCCAA
TCCTATTATAGTAAAACCCTACGTAGCTTTTTTTTTTTTTCACATTTATT
TCCAGTGCTCGATGGGCTGGCTCCCTGTCACCAGGACATCTTGCCAGAGT
ATTTAACCGCGGTCGCACAGAAGGGTTCCTTTCCCCAAGGCCCCCACTCC
CCCCCGTCTGCGGTGCTTGCCTAAGATTTTTATCGCGAGAAGGGTTCAGC
CGTCCCTCTCCCTCGTCGACGGTGAGGCCGAAGTTTGTGTATATGATAAG
CACAATGCCACCTTTCAGGCATTCTTGCTTCTTTTCCGTTCGCGTTCCTC
CTCTTTTTCCTTCCTCGCTTCGGCGGACACACACCGCAACCCACCGTCGG
TGGCCTGGGGACAGAACTACTTGATGGTGCTCTTTTGGGTTGTGACTGGT
ATAGCTTGGAGTCGAGCGCGTCGATGTTTGCTTCGGATGGAAATGCGACT
GCAACCAAGCGGAGTTGGAACGTGTCGGTGTTTCTCTGAAAACGGACCGG
GCTGAGGAGGCCGCGTGCATTACATATACACCTAGACTTTGAGGAGGGAA
AAATAAGATAAAAGTAATGACAACAGTAGTAGCGGAATGCTTGATCCCGA
TTGGACGAGATGAACAGTCCCGTTTGCTTGTTCGTTGTTTTGTCTTCGGG
CGGGCACTCAGCACACGCGAAGCAGGCGTGTGCTGTTTTATGTTTAGGCC
GTGTTTCTCGGGAGAGGAGAAGGAACCGCGTGATGATCGATCCATCCACC
TTCCCTCACAAGCCTCCTGGCGCACGCACATCAGTTCCAAGAAAGCACGC
GCACGTTCTTTGCGCGCTCTACGAGATTGTTGGGCCATCATGCGGCCTAT
CCCCACCCCCCCCCCCCCCCCCCCCCCTAACCCTAACCCGAAACGACCCG
ATATCAATATCAGGCGCTAGCTCTCCTGAGGGAGATGCCCAGCGTGGGGC
TCGCGCCTGACGTCATCAGCTACAACTCGGCGATCGCCGCGCTCGGCAAG
AGCGGCCAGCCCGACGAGGCGATGCAGCTGATGAAGGAGATGCCGGGGAG
AGGCTTGTACGCGGACGCGATCACCTGCTCCTCCGCGCTGACGGCGCTTG
GGAACTCGGGGCTCTGGGAGGAAGCCCTCGTCCTTCTCAGGGAGGTGTGT
GTGTGTGTTTGCGTTTGTATTCTTGCCTTCTCTTCGTTCTCGCACAAGTC
AAAATGGCATGACCTTGGCAGGGGCGAGAGCGGGAGGATAGGAGCGGTGA
AGACCGCACGGGATGTTGAAAGGGGCTCAACCGAACCGTGCCGTACCGAA
CCGTGCCGCGAAACAGAGTTTTGGTAGTTCGGGGTGGCTGTGTTTTCCTC
GCTTTCTCCTTGCTCGAGAAAGAAACTATTCGAAGCAGGTAGAACTTGCT
TATGTTTGCGGTGTTATTGATGAAGGTTCCCGTTTTGTTGTCAGAAAACG
ACAGCGAAACGCGTGTTATTTAAAAAAAGACACAGAAGCACGCGCACCCA
TGCGCCGCGCCGCTCCTGCTGCCGCGACCCCCGACTCTCTCAGCGTTAAC
CGAGCAACAAGCATCGTTTTTCTTGCAACGCGGCACACACGGACAGATGC
CGGCGGCCGGGATCAACCCCACCGTGATCTGCTACACGGCGGCGATCCGC
GCCTGCGGCGAGGCCGGCCAGTCGGAGGAGGCCCTCTCGCTGCTGCGGGA
GATGCCCTCAGCGGGCGTCACTGCCAACCTCTTCTCATACTCGGCCGCCA
TCTCGGCCTGCGCCAAGAGTGGGCAGTGGGAGAAGGGGCTGGTGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGATGGATGGATGGAT
AGAGAAATATCACGGGCACCGAAGGAGGGAGGGAGAGAGAGATATGCCAC
GGTCAGGGGGGGAGGGAAGGAGGGGGGGAGAGGGAGAGAGATAAAGAGAG
TCTGTACGTAGATTTAGCGGGGATGCATGCCCTTTTAAAACTCCCGGGTC
TTGTTGCCTGGAGGAGTTTTTTTCTCTCTGATGTTAGTTTTGCGTGTGAA
TGAATTTGATGTTGATGGGGGGAGTGCGTGTGTGTTAGGTGTGGTGTGTG
TGTTCGTGTTGTGTGCGTGCGACCGTGCCCCCCAGACCGCCGCCCTGTTT
CCTGTTCGGATCGCCGCGGTTGTAATCTGCGTTGCTGTCTGTCGTGCCAT
GCTAGGCCCTTCTCAACGAGCTGCCGGGCCTCGACCCTCCCATCACGCCG
AACGAGTTCTGCTACACGGCGGCGATAACCGGCTGCGGCATCGGGGGGCA
GTGGGAGCAAGCCGTACAGACCTTCAGGTGAGTAGTTGTACGACCCCCAC
CCGTATTGTAGCAGTCCCCGCCGAAGATGAAAACAAAATAGGCGAAAAAA
GGAGGGCGAAAACGTCGGGAAAAGCACAAGAATGAAACAGCTGCCGCCAG
GAGCCTGTTTGTGGCCCCCGCGGATTTCTTGTTGTTCTCGTCTTGTCTTA
AGCTGTCGTCGTCTCTCTTAAGCTGTCGTCGGTCGGCGACCTCGAAACCT
TTTAGCGGCGGAGGTTGGGAGTGGCGAATCTCCGGAACACTGCAGTCGAA
AGCGACAAGGACCATGAGCTTTTCACTCTCGCCGGAAAGGGTCCAAAAGG
GGTCCGAATCCTCCTCGCGTTATTGTAAGCACCTATTGATGCCACCCACC
CACCTGCGGTGCCCGCAGAGGGGGAAGTCCTGTGTGTTTGCCCCCCTCTT
GTGTGTGGCTGACCCCCCGGCTGATACACGAAACCACGTGCCCGAGAGGT
GTAGACGGCGGTCAGAAGAGATGGGACGAAAGACGCCAAAACACCGTGTG
GGGGCGGTTGTTTTTTGAAAGCTTTCAAAAGTTTTTCCGTTTTTTTGCCA
ATTAAAAGTCAAGGAAGAAAAATAAAAAACTCTCCGTCACGAGCTGCGCC
AGGGGACACAGGGCGTTTGCCGGTACTTTTAAGATTTCCGAACAACTACC
ACTGTCTGGGAGAAAAGTGTACCTGGGTGCCGGGGAAGTTATTGGACATA
TTGTTGTGCACGGACCATACACATGTCCATGAATAAACATTTTGTTTTGT
TTTTGGTGCCAGCGAGGCGCAAAACCCCTCCGGGCGTCAGTTTAGTATTG
CCTGGCGCGTTCGTACACATCTTTGTTTTGTTTTGCGTTTTTCTTCGGCG
GCGCGTCGAGTGTGCCCCCTTAAGTTTCTGTGTAACCGCGGGCCCCCATG
GATGTTATTTATTGGAGTAGATTGGCTAATGTAAGAAACAACAACAGCAT
CAACAACTAAGGCATGAGCCAAGAGAGAAAAAAATACAACCTTTCCAGTT
GACTTAGCAGGCAGCCGGAGTGGAACAGCAGTTGTTTCGTGTTTAGTCCG
CCCACGATCAGGGCCTTAAATTAAAACACACGCAAGTAGGGATACGCACG
CACGCACCGCCCACGCGGTGGGCGTGCATGGAACAGTCGGGGCTATGCTC
ACCTCCGCATGTATGTCAACACACACGCATACGCAGGCGGGGCGATTTCG
GCGATGCAGGCGCCTCTATTCAGCCAGGCTTAACCCCTCCGGCATGTGCA
TATCTGGTACATACATTCATGCTTGTTTTGCTCTCTCGGGTTTCGGTCGG
CGCAGGAACATGATCGCGAACGGTGTCGAGCCTTCGGTGGTGGGCTACAC
GTCGGCCGTGTCGGCGCTGGCGCACTGCGGGGAGGTGAATCGCGCTCTGG
AGCTGATGAGAGAGATGAAGGAGGACGCGGGCATCGAACCCAATGAAAAT
GTGTGTTTGTGTGTGTGTGTGTGTGGGTGTTGGTCTGTGTGTGTTTCGTG
TGTTGGTGTGTGTGTGCGCGCGCGCTGGGTGTGTGTTGGCTTCTCGCGAG
TATTCAAGAACGTTCCGAGAACTTGTCGAACAATCTCAACGTTTTGTTGT
GCTTCCACTCCTCACCGAAAGCAAAAGTGTGCGTGTGTGTGGTGTGGTGT
GGTGTGGTGTGTGCGCAAGAACTTGTGGAACAAAATCATCCCTTGGTTTT
CTGTTTCCCTCCCTCCACAACAGAAGCAAGCAAATACGTTTTATGTTTGG
GTTTCTCTCAAAACTTACACACTTGTGCAGCTATACCCCGAGACCTACCT
ACCTTTTGCAAAAAAATACTCGGTATGAAACACTCCATCTTCCTCCTCAA
TCCAAACCGGGACCCAAAACGCTTTTCCTCCATGAACCCACCCACCCTGG
AAATAAATGTGAAAAAAAACACACATATATATATATATTATACACTTTTA
GTACAAAATGCCAGCAGCCTAAATACGTCCCCCCCACCCCCCCACTCCGC
CAACAAAAAAAAAAAAAAAAAAGACGTACTCGGCTGCCATCCTGGCCTGC
GGGAACGGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13544:3..4564-

>mRNA_L-elsbetiae_contig13544.2708.1 ID=mRNA_L-elsbetiae_contig13544.2708.1|Name=mRNA_L-elsbetiae_contig13544.2708.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1740bp|location=Sequence derived from alignment at L-elsbetiae_contig13544:3..4564- (Laminarionema elsbetiae ELsaHSoW15)
TCCACTTGGCAGGTCGGCGAGCAGTGGGAGCGGGCGCTTGGCTTTCTCCG
CGAGATGCCCGGCCTCGGCGTCGATCCGTGCGTCATCAGCTACAACACGG
CCATCTCGGCCTGCGCCAAGTGCGGGCGGGGCGACCAGTCCACTTGGCAG
GTCGGCGAGCAGTGGGAGCGGGCGCTTGGCTTTCTCCGCGAGATGCCCGG
CCTCGGCGTCGATCCGTGCGTCATCAGCTACAACACGGCCATCTCGGCCT
GCGCCAAGTGCGGGCGGGGCGACCAGGCGCTAGCTCTCCTGAGGGAGATG
CCCAGCGTGGGGCTCGCGCCTGACGTCATCAGCTACAACTCGGCGATCGC
CGCGCTCGGCAAGAGCGGCCAGCCCGACGAGGCGATGCAGCTGATGAAGG
AGATGCCGGGGAGAGGCTTGTACGCGGACGCGATCACCTGCTCCTCCGCG
CTGACGGCGCTTGGGAACTCGGGGCTCTGGGAGGAAGCCCTCGTCCTTCT
CAGGGAGGCGCTAGCTCTCCTGAGGGAGATGCCCAGCGTGGGGCTCGCGC
CTGACGTCATCAGCTACAACTCGGCGATCGCCGCGCTCGGCAAGAGCGGC
CAGCCCGACGAGGCGATGCAGCTGATGAAGGAGATGCCGGGGAGAGGCTT
GTACGCGGACGCGATCACCTGCTCCTCCGCGCTGACGGCGCTTGGGAACT
CGGGGCTCTGGGAGGAAGCCCTCGTCCTTCTCAGGGAGATGCCGGCGGCC
GGGATCAACCCCACCGTGATCTGCTACACGGCGGCGATCCGCGCCTGCGG
CGAGGCCGGCCAGTCGGAGGAGGCCCTCTCGCTGCTGCGGGAGATGCCCT
CAGCGGGCGTCACTGCCAACCTCTTCTCATACTCGGCCGCCATCTCGGCC
TGCGCCAAGAGTGGGCAGTGGGAGAAGGGGCTGATGCCGGCGGCCGGGAT
CAACCCCACCGTGATCTGCTACACGGCGGCGATCCGCGCCTGCGGCGAGG
CCGGCCAGTCGGAGGAGGCCCTCTCGCTGCTGCGGGAGATGCCCTCAGCG
GGCGTCACTGCCAACCTCTTCTCATACTCGGCCGCCATCTCGGCCTGCGC
CAAGAGTGGGCAGTGGGAGAAGGGGCTGGCCCTTCTCAACGAGCTGCCGG
GCCTCGACCCTCCCATCACGCCGAACGAGTTCTGCTACACGGCGGCGATA
ACCGGCTGCGGCATCGGGGGGCAGTGGGAGCAAGCCGTACAGACCTTCAG
GCCCTTCTCAACGAGCTGCCGGGCCTCGACCCTCCCATCACGCCGAACGA
GTTCTGCTACACGGCGGCGATAACCGGCTGCGGCATCGGGGGGCAGTGGG
AGCAAGCCGTACAGACCTTCAGGAACATGATCGCGAACGGTGTCGAGCCT
TCGGTGGTGGGCTACACGTCGGCCGTGTCGGCGCTGGCGCACTGCGGGGA
GGTGAATCGCGCTCTGGAGCTGATGAGAGAGATGAAGGAGGACGCGGGCA
TCGAACCCAATGAAAATGAACATGATCGCGAACGGTGTCGAGCCTTCGGT
GGTGGGCTACACGTCGGCCGTGTCGGCGCTGGCGCACTGCGGGGAGGTGA
ATCGCGCTCTGGAGCTGATGAGAGAGATGAAGGAGGACGCGGGCATCGAA
CCCAATGAAAATACGTACTCGGCTGCCATCCTGGCCTGCGGGAACGGCGG
GACGTACTCGGCTGCCATCCTGGCCTGCGGGAACGGCGGG
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