mRNA_L-elsbetiae_contig1354.2707.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1354.2707.1
Unique NamemRNA_L-elsbetiae_contig1354.2707.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1354.2707.1 vs. uniprot
Match: D7FIV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIV7_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 4.910e-13
Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 3 
Query:    3 CREGILVAVEKLRYETPEKGAEHAIGICIKVAGALAKEPRAEGVCAPRHPSARRDP*HGQDVQPHGGLNQPTNSSSVFRRMVDKCKRLHWPGFLK 287
            CREGILVAVEKLRY+T E+G EH +GI IKVA AL++E        P  P           +    G+ +  N   VFRRMVDK K LHW  F +
Sbjct:  728 CREGILVAVEKLRYKTAEEGIEHTVGIFIKVAEALSRERGLRIFVHPVIPV----------LDETRGMVKTYNR--VFRRMVDKSKHLHWLDFFE 810
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BLAST of mRNA_L-elsbetiae_contig1354.2707.1 vs. uniprot
Match: A0A7S4A4Z0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4Z0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.880e-8
Identity = 39/104 (37.50%), Postives = 54/104 (51.92%), Query Frame = 3 
Query:    3 CREGILVAVEKLRYETPEKGAEHAIGICIKVAGALAKEPRAEGVCAPRHPSARRDP*HGQDVQPHGGLNQPTNSSSVFRRMVDKCKRLHWP----GFLKPSPGR 302
            CREGILVAVEKLRYE+ ++G  H   I + VA  LA+  R + +  P  P    D   G  ++           ++  RR+VD+C  L W     GFL P+ G+
Sbjct:  597 CREGILVAVEKLRYESVDEGIRHTASIFVDVASRLARHKRWKVLVHPVPPVL--DETRGMVLK----------YNATLRRLVDECSELTWVDCFGGFLDPASGK 688
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1354.2707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIV7_ECTSI4.910e-1347.37Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4A4Z0_9STRA1.880e-837.50Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1354contigL-elsbetiae_contig1354:7693..8863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_000060.1
Exons3
Model size344
Cds size207
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1354.2707.1prot_L-elsbetiae_contig1354.2707.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1354 7829..8863 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.452754-UTR-L-elsbetiae_contig1354:7692..78281622815522.452754-UTR-L-elsbetiae_contig1354:7692..7828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1354 7693..7828 -
1691682939.2520335-UTR-L-elsbetiae_contig1354:7692..78281691682939.2520335-UTR-L-elsbetiae_contig1354:7692..7828Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1354 7693..7828 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.4645877-CDS-L-elsbetiae_contig1354:7828..78411622815522.4645877-CDS-L-elsbetiae_contig1354:7828..7841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1354 7829..7841 -
1691682939.2702196-CDS-L-elsbetiae_contig1354:7828..78411691682939.2702196-CDS-L-elsbetiae_contig1354:7828..7841Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1354 7829..7841 -
1622815522.4778607-CDS-L-elsbetiae_contig1354:8451..85531622815522.4778607-CDS-L-elsbetiae_contig1354:8451..8553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1354 8452..8553 -
1691682939.2826023-CDS-L-elsbetiae_contig1354:8451..85531691682939.2826023-CDS-L-elsbetiae_contig1354:8451..8553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1354 8452..8553 -
1622815522.487489-CDS-L-elsbetiae_contig1354:8771..88631622815522.487489-CDS-L-elsbetiae_contig1354:8771..8863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1354 8772..8863 -
1691682939.291662-CDS-L-elsbetiae_contig1354:8771..88631691682939.291662-CDS-L-elsbetiae_contig1354:8771..8863Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1354 8772..8863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1354.2707.1

>prot_L-elsbetiae_contig1354.2707.1 ID=prot_L-elsbetiae_contig1354.2707.1|Name=mRNA_L-elsbetiae_contig1354.2707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
TAGRASLLPSRNSATRPPRRARSTRSASASRWPGLWRRSPGLRVFVHPVI
PVLDETRNMVKMYNRTAD*
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mRNA from alignment at L-elsbetiae_contig1354:7693..8863-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1354.2707.1 ID=mRNA_L-elsbetiae_contig1354.2707.1|Name=mRNA_L-elsbetiae_contig1354.2707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1171bp|location=Sequence derived from alignment at L-elsbetiae_contig1354:7693..8863- (Laminarionema elsbetiae ELsaHSoW15)
ACTGCCGGGAGGGCATCCTTGTTGCCGTCGAGAAACTCCGCTACGAGACC
CCCGAGAAGGGCGCGGAGCACGCGATCGGCATCTGCATCAAGGTATATTA
TCTACCCACGTGTTTTTCCTTCTTTCTGCGGGTTATTGTTGTTGTCGTTG
TTGGACATATCTGCACGATATATCTATTCCTCGCGTTGCCCGTGTATTTG
CTTGGACCAGTGCCTGCCTGCCTCCGCGAAAACCTCACGTGCGACGCGGC
GGCTGTATAGCCCTGTGGCCATGCGTTCTTTTCCTCTGTGCCACGGCCCC
AATCTTGAAGGTGGCCGGGGCTTTGGCGAAGGAGCCCAGGGCTGAGGGTG
TTTGTGCACCCCGTCATCCCAGTGCTCGACGAGACCCGTAACATGGTCAA
GATGTACAACCGGTGAGAGTGACATAAACACACACAGAGAGCAGGAAGAA
GAGGCGCAGAGAAAAGTACACAGATAGGTGTCACAGTCTTAAATCATGGC
ACCTGCGATATTAATGCAACGGAATTTCGAGAGGGCTTATGGGTGGTTGT
AGAAGTACGTTGCTTGCTAAATAATTCGCAGCACGTTCTTATATCGTGCG
CGATGCGGGTACCGCTGCTAGACGTTGGTGACAATAGCCCAAACACCCGG
TGCTATTGTAGTAAGTGCATACTTCGAAGTATCTATATCTGGCATTCATT
TCACCCGTGCCGGTGCCATACTTTGCGTGTTCGGAAAGTTACACCGCGGC
CCGAAGCCCCATTTTCTCATCCCTCATCCTCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGTTTTTTTTGTTTGCGCCGGCGCGCGCCCGG
GCCACCACCACCCCCACCCAACNNNNNNNNNNTCCTTTCCCCCGGTGCGG
GCCCCTTCTTTTGTTTGTCGGAAAGTTAACCCCCCGCCCCAAGCCCCTTT
TTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCATCTCCCCTTGCATT
GTGCTGTTGTGTTCGCTGGAAGCACGGCGGACTAAACCAACCAACCAACT
CATCCAGTGTGTTCCGGCGCATGGTGGACAAGTGTAAGCGCCTCCACTGG
CCTGGGTTTCTTAAGCCATCCCCTGGGCGACACGGGCGACAGCCTCCAGC
CCGACTTCCACCTCGACGACG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1354:7693..8863-

>mRNA_L-elsbetiae_contig1354.2707.1 ID=mRNA_L-elsbetiae_contig1354.2707.1|Name=mRNA_L-elsbetiae_contig1354.2707.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig1354:7693..8863- (Laminarionema elsbetiae ELsaHSoW15)
ACTGCCGGGAGGGCATCCTTGTTGCCGTCGAGAAACTCCGCTACGAGACC
CCCGAGAAGGGCGCGGAGCACGCGATCGGCATCTGCATCAAGACTGCCGG
GAGGGCATCCTTGTTGCCGTCGAGAAACTCCGCTACGAGACCCCCGAGAA
GGGCGCGGAGCACGCGATCGGCATCTGCATCAAGGTGGCCGGGGCTTTGG
CGAAGGAGCCCAGGGCTGAGGGTGTTTGTGCACCCCGTCATCCCAGTGCT
CGACGAGACCCGTAACATGGTCAAGATGTACAACCGGTGGCCGGGGCTTT
GGCGAAGGAGCCCAGGGCTGAGGGTGTTTGTGCACCCCGTCATCCCAGTG
CTCGACGAGACCCGTAACATGGTCAAGATGTACAACCGCACGGCGGACTA
ACACGGCGGACTAA
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