mRNA_L-elsbetiae_contig13533.2704.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13533.2704.1
Unique NamemRNA_L-elsbetiae_contig13533.2704.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13533.2704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13533contigL-elsbetiae_contig13533:2573..3155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size583
Cds size444
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.3742087-UTR-L-elsbetiae_contig13533:2572..27111622815522.3742087-UTR-L-elsbetiae_contig13533:2572..2711Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13533 2573..2711 +
1691682939.2252712-UTR-L-elsbetiae_contig13533:2572..27111691682939.2252712-UTR-L-elsbetiae_contig13533:2572..2711Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13533 2573..2711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815522.388016-CDS-L-elsbetiae_contig13533:2711..31551622815522.388016-CDS-L-elsbetiae_contig13533:2711..3155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13533 2712..3155 +
1691682939.2341115-CDS-L-elsbetiae_contig13533:2711..31551691682939.2341115-CDS-L-elsbetiae_contig13533:2711..3155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13533 2712..3155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13533.2704.1prot_L-elsbetiae_contig13533.2704.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13533 2712..3155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13533.2704.1

>prot_L-elsbetiae_contig13533.2704.1 ID=prot_L-elsbetiae_contig13533.2704.1|Name=mRNA_L-elsbetiae_contig13533.2704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MVDSPGKARCTRWPATNNLIWDKRGQTMTKTKDSIYTVLSELILFVAGHL
VKASMARKTRQKQKVKNRKRDHLTDPREENRAATTTELFRPEYQPRHAVS
VDHRRTWLPRTNLVTTRRYPGMLLLCATAMSGPPPPVVFLLFFLACPA
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mRNA from alignment at L-elsbetiae_contig13533:2573..3155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13533.2704.1 ID=mRNA_L-elsbetiae_contig13533.2704.1|Name=mRNA_L-elsbetiae_contig13533.2704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=583bp|location=Sequence derived from alignment at L-elsbetiae_contig13533:2573..3155+ (Laminarionema elsbetiae ELsaHSoW15)
GCTCATGGACGTTTGTTGCTGATGCCGATGACTCTGTACGTTTACCCTTA
CAGTAGTACGCTCTAGGTCGCGCGTGTGTGCAAACATACGCTTCTTGCGG
ACGAGGTTTGAGCACTACCAGAGCTACACACAGCAAGGCATGGTGGACAG
TCCGGGCAAGGCCAGGTGTACCAGATGGCCAGCAACAAACAATTTGATTT
GGGACAAACGAGGCCAAACAATGACAAAAACGAAAGACTCTATCTACACA
GTACTGTCGGAACTCATATTGTTTGTTGCTGGCCACCTGGTAAAAGCGAG
TATGGCACGAAAGACCCGACAAAAACAGAAGGTAAAGAACAGGAAAAGAG
ACCATCTAACCGATCCCCGCGAGGAAAACAGAGCTGCAACGACAACAGAG
CTATTTAGACCAGAATACCAACCCAGGCACGCCGTCTCAGTTGATCACCG
CCGTACATGGCTGCCTCGTACCAATCTCGTCACAACCCGGCGCTACCCCG
GCATGCTCCTGCTGTGTGCTACTGCGATGTCGGGACCCCCCCCCCCCGTG
GTCTTTCTCCTCTTCTTCCTCGCCTGTCCTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13533:2573..3155+

>mRNA_L-elsbetiae_contig13533.2704.1 ID=mRNA_L-elsbetiae_contig13533.2704.1|Name=mRNA_L-elsbetiae_contig13533.2704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig13533:2573..3155+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGACAGTCCGGGCAAGGCCAGGTGTACCAGATGGCCAGCAACAAA
CAATTTGATTTGGGACAAACGAGGCCAAACAATGACAAAAACGAAAGACT
CTATCTACACAGTACTGTCGGAACTCATATTGTTTGTTGCTGGCCACCTG
GTAAAAGCGAGTATGGCACGAAAGACCCGACAAAAACAGAAGGTAAAGAA
CAGGAAAAGAGACCATCTAACCGATCCCCGCGAGGAAAACAGAGCTGCAA
CGACAACAGAGCTATTTAGACCAGAATACCAACCCAGGCACGCCGTCTCA
GTTGATCACCGCCGTACATGGCTGCCTCGTACCAATCTCGTCACAACCCG
GCGCTACCCCGGCATGCTCCTGCTGTGTGCTACTGCGATGTCGGGACCCC
CCCCCCCCGTGGTCTTTCTCCTCTTCTTCCTCGCCTGTCCTGCCATGGTG
GACAGTCCGGGCAAGGCCAGGTGTACCAGATGGCCAGCAACAAACAATTT
GATTTGGGACAAACGAGGCCAAACAATGACAAAAACGAAAGACTCTATCT
ACACAGTACTGTCGGAACTCATATTGTTTGTTGCTGGCCACCTGGTAAAA
GCGAGTATGGCACGAAAGACCCGACAAAAACAGAAGGTAAAGAACAGGAA
AAGAGACCATCTAACCGATCCCCGCGAGGAAAACAGAGCTGCAACGACAA
CAGAGCTATTTAGACCAGAATACCAACCCAGGCACGCCGTCTCAGTTGAT
CACCGCCGTACATGGCTGCCTCGTACCAATCTCGTCACAACCCGGCGCTA
CCCCGGCATGCTCCTGCTGTGTGCTACTGCGATGTCGGGACCCCCCCCCC
CCGTGGTCTTTCTCCTCTTCTTCCTCGCCTGTCCTGCC
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