mRNA_L-elsbetiae_contig13518.2694.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13518.2694.1
Unique NamemRNA_L-elsbetiae_contig13518.2694.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: D7FTG3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 6.910e-26
Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 1
Query:    1 RVFIWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGMD 255
            RVFIW R+SGRLVRAIKADDQIVNC APH SL  LATS LE+V R++ PRGE+E +IG+ EAA  SD DS SLE+IA+SNQG MD
Sbjct:  749 RVFIWERSSGRLVRAIKADDQIVNCVAPHPSLPVLATSGLESVARIWSPRGEEEEVIGDDEAAD-SDPDSRSLEDIAQSNQGNMD 832          
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: A0A0W8DD38_PHYNI (Acyltransferase family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DD38_PHYNI)

HSP 1 Score: 67.4 bits (163), Expect = 3.820e-9
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 RVFIWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGMD 255
            R  +W +++G LV AI+AD  IVNC  PH   + LATS +ENV+R++GP   +E    EAE           LEEI   NQ  MD
Sbjct:  429 RALVWDKSTGELVNAIEADADIVNCVQPHPFDACLATSGIENVIRLWGPTSGEENTPTEAE-----------LEEIVSKNQSQMD 502          
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: UPI0015B1165C (WD and tetratricopeptide repeats protein 1-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015B1165C)

HSP 1 Score: 63.5 bits (153), Expect = 1.140e-8
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1
Query:    4 VFIWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGED 159
            +FIW R +  +VR ++ DD IVNC  PH S   LATS ++ VVR++GPR ED
Sbjct:   87 IFIWDRVTTNIVRVLRGDDSIVNCLQPHPSTCLLATSGIDPVVRLWGPRAED 138          
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: K3X2R0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2R0_GLOUD)

HSP 1 Score: 63.9 bits (154), Expect = 6.140e-8
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    1 RVFIWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGMDFGSCAW----TLPNAIRCV 300
            R +IW + +G+LV AI AD  IVNC  PH + S LATS +E+V+R++ P G+ +    E E           L+++ ++NQ  M   +  +      PN IR V
Sbjct:  594 RAYIWEKATGKLVNAIVADQNIVNCVRPHPTDSCLATSGIEDVIRLWRPTGDPDLSPTEDE-----------LDDMMKANQSKMSDNNYGFYFRSATPNVIRVV 686          
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: A0A421GM84_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GM84_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.750e-8
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 RVFIWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGM 252
            R  +W + +G LV AI AD  IVNC  PH   + +ATS +ENV+R++ P   +E    +AE       +   ++++AES  G M
Sbjct:   70 RALVWDKATGELVNAIDADADIVNCVQPHPFDACIATSGIENVIRLWSPTSGNENTPTKAELEDILTRNQSQMDDVAESFGGAM 153          
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: H3GXB4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXB4_PHYRM)

HSP 1 Score: 63.5 bits (153), Expect = 8.200e-8
Identity = 40/102 (39.22%), Postives = 52/102 (50.98%), Query Frame = 1
Query:    1 RVFIWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGMD--FGSCAWTLPNAIRCV 300
            R  +W + +G LV AI+AD  IVNC  PH   + LATS +ENV+R++ P    E    EAE           LE+I   NQ  MD   GS    + N +R V
Sbjct:  578 RALVWDKATGDLVNAIEADADIVNCVQPHPFDACLATSGIENVIRLWAPTSRKENTPTEAE-----------LEDILTRNQTQMDDVAGSFEGAMHNMVRLV 668          
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: A0A2D4CB75_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CB75_PYTIN)

HSP 1 Score: 63.2 bits (152), Expect = 1.130e-7
Identity = 40/103 (38.83%), Postives = 54/103 (52.43%), Query Frame = 1
Query:    1 RVFIWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGM-DFGS--CAWTLPNAIRCV 300
            R +IW + +GR+V AI+AD  IVNC  PH     LATS +ENVVR++ P G+           +  +L    L+E+   NQ  M D  S   A   PN IR +
Sbjct:  638 RAYIWDKLTGRVVNAIEADADIVNCVQPHPYDVCLATSGIENVVRLWKPTGD-----------SSDELSRDELDEMIAQNQSNMADSASYYLAGANPNIIRLI 729          
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: A0A6A3IP43_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3IP43_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.490e-7
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   10 IWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGM 252
            +W + +G LV AI+AD  IVNC  PH   + LATS +ENV+R++ P  EDE     A+       +   +++ AES +G M
Sbjct:  590 VWDKATGELVNAIEADADIVNCVQPHPFDACLATSGIENVIRLWTPTSEDENTPTAAKLEDILTKNQTQMDDAAESFEGAM 670          
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: A0A3F2RU53_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RU53_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.720e-7
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 1
Query:    1 RVFIWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGM 252
            R  +W + +G LV AI AD  IVNC  PH   + +ATS +ENV+R++ P   +E    +AE       +   ++++AES  G M
Sbjct:  139 RALVWDKATGELVNAIDADADIVNCVQPHPFDACIATSGIENVIRLWSPTSGNENTPTKAELEDILTRNQSQMDDVAESFGGAM 222          
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Match: A0A0P1B286_PLAHL (WD40 repeat protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B286_PLAHL)

HSP 1 Score: 62.4 bits (150), Expect = 1.990e-7
Identity = 33/84 (39.29%), Postives = 46/84 (54.76%), Query Frame = 1
Query:    1 RVFIWRRTSGRLVRAIKADDQIVNCAAPHSSLSTLATSRLENVVRMYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGM 252
            R  +W + +G LV AIKAD  IVNC  PH   + LATS +ENV+R++ P    E    E+E A     +   + +I  S +G M
Sbjct:  575 RALVWDKFTGELVNAIKADADIVNCIQPHPFDACLATSGIENVIRLWSPISSKENTPTESELADIISRNQSQMNDIGTSFEGAM 658          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13518.2694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTG3_ECTSI6.910e-2671.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0W8DD38_PHYNI3.820e-943.53Acyltransferase family n=1 Tax=Phytophthora nicoti... [more]
UPI0015B1165C1.140e-851.92WD and tetratricopeptide repeats protein 1-like n=... [more]
K3X2R0_GLOUD6.140e-835.58Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A421GM84_9STRA6.750e-836.90Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
H3GXB4_PHYRM8.200e-839.22Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A2D4CB75_PYTIN1.130e-738.83Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6A3IP43_9STRA1.490e-739.51Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A3F2RU53_9STRA1.720e-736.90Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A0P1B286_PLAHL1.990e-739.29WD40 repeat protein n=1 Tax=Plasmopara halstedii T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13518contigL-elsbetiae_contig13518:1255..2552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size783
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13518.2694.1prot_L-elsbetiae_contig13518.2694.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13518 1905..2072 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.968129-UTR-L-elsbetiae_contig13518:1254..13671622815520.968129-UTR-L-elsbetiae_contig13518:1254..1367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13518 1255..1367 +
1691682938.451723-UTR-L-elsbetiae_contig13518:1254..13671691682938.451723-UTR-L-elsbetiae_contig13518:1254..1367Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13518 1255..1367 +
1622815520.9810612-UTR-L-elsbetiae_contig13518:1882..19041622815520.9810612-UTR-L-elsbetiae_contig13518:1882..1904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13518 1883..1904 +
1691682938.4602249-UTR-L-elsbetiae_contig13518:1882..19041691682938.4602249-UTR-L-elsbetiae_contig13518:1882..1904Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13518 1883..1904 +
1622815521.0117507-UTR-L-elsbetiae_contig13518:2072..25521622815521.0117507-UTR-L-elsbetiae_contig13518:2072..2552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13518 2073..2552 +
1691682938.475758-UTR-L-elsbetiae_contig13518:2072..25521691682938.475758-UTR-L-elsbetiae_contig13518:2072..2552Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13518 2073..2552 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.9989686-CDS-L-elsbetiae_contig13518:1904..20721622815520.9989686-CDS-L-elsbetiae_contig13518:1904..2072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13518 1905..2072 +
1691682938.4680815-CDS-L-elsbetiae_contig13518:1904..20721691682938.4680815-CDS-L-elsbetiae_contig13518:1904..2072Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13518 1905..2072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13518.2694.1

>prot_L-elsbetiae_contig13518.2694.1 ID=prot_L-elsbetiae_contig13518.2694.1|Name=mRNA_L-elsbetiae_contig13518.2694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=56bp
MYGPRGEDEAIIGEAEAAAYSDLDSPSLEEIAESNQGGMDFGSCAWTLPN
AIRCV*
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mRNA from alignment at L-elsbetiae_contig13518:1255..2552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13518.2694.1 ID=mRNA_L-elsbetiae_contig13518.2694.1|Name=mRNA_L-elsbetiae_contig13518.2694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1298bp|location=Sequence derived from alignment at L-elsbetiae_contig13518:1255..2552+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGTGTTCATCTGGAGGCGCACGTCTGGCAGGCTGGTGCGCGCGATCAA AGCCGACGACCAGATTGTCAACTGCGCTGCCCCACATTCATCTCTCTCCA CACTCGCCACCAGGTGTGTACATATTGCAGGGGGGAGGCGGGTACTCGAC GAAGTGCTCCCCCATCGGAGTTGGGGGCATATTTGTTGTCGTTGTAGTTT GAGCCTGTATTTAGGAGTACAAGTTCTGTTTTGGGGTTGGTCAAACGCTA AGGTTGTCGCGAGGTGGGTTCTTCTTGGTGTGTTTCAGCGAGGGCGGAGC TGACCGGCGAAATCTCTTGGACCGGCAGAAGTTGATATCTTGGAGCCCTT GGACGGGTCTGATCGGTGGGAACGTTCAGTTTCTTTCTCGCGTGCTGGGG AAGGGTGTTTTGGCATGAAGAGCTTGCGTTGGGCCATGCATGATTGAGAG GACACGACCCTTGCCTCCGGGGGTGGCCCTTTGCCCCCCGCCCAACCCGT GCCTTGCGTCGCGGCGATGCTGTGCGCGCTGGGCATCCCCGCTTTCGTTT TTCACTGCCGTGTATTTCTCGCTCACCCCGTTGAGTACTGCTATTTGTCG GTTCTCTCACTGCGCTCGATTTTCGTAGCCGGCTGGAAAACGTTGTGAGG ATGTATGGTCCGCGCGGAGAGGACGAGGCGATTATCGGGGAAGCGGAAGC TGCTGCCTACTCTGACCTTGATTCTCCGTCTCTAGAAGAGATTGCCGAGA GTAATCAGGGGGGCATGGACTTTGGTTCGTGTGCCTGGACCTTGCCCAAC GCCATCCGGTGTGTGTAGGAGTTGTGCGTCTTGGGGTGCAGGCAGGCGCG TGCAATGTACAGTAGGTAGGCGAGGAGTCTCGCTGCACGGGTTGGCCTAT CATTGTCGATGCCACACCTGTGACTACGTAGGCAGATGCGACATCGGACC ATCGGGTTTGCAGGTTGTTTTCAGTCAGTCGTGACCTTTCGGGGCGGGCT TGACGGTCAGGCGTGGGCAGCGGGGGTGCTGTCTTGTTGAGCTATACTTC ACGGGCCGTTTCGGCCGGGCACACGAGTAAGTAGGGAGAGACCGTCGGAA TCAGTGCCTCAACTTCGTGTGTAGTAGGTGTTTTTCGTACTCGACCCGTG ATTTGTGTGGGCAGGTCTGTGCTCAAGATTCGTCGTACCAGGGTTACTAC AGATAGTTGCTAACCGAAGGCCAGGGGGATGCCAAGAGCGCATACGTCTA TGGCAGTAGTGACGGCTGCCTAACCTACCAACACTCATGGTCCGTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13518:1255..2552+

>mRNA_L-elsbetiae_contig13518.2694.1 ID=mRNA_L-elsbetiae_contig13518.2694.1|Name=mRNA_L-elsbetiae_contig13518.2694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=336bp|location=Sequence derived from alignment at L-elsbetiae_contig13518:1255..2552+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGGTCCGCGCGGAGAGGACGAGGCGATTATCGGGGAAGCGGAAGC
TGCTGCCTACTCTGACCTTGATTCTCCGTCTCTAGAAGAGATTGCCGAGA
GTAATCAGGGGGGCATGGACTTTGGTTCGTGTGCCTGGACCTTGCCCAAC
GCCATCCGGTGTGTGTAGATGTATGGTCCGCGCGGAGAGGACGAGGCGAT
TATCGGGGAAGCGGAAGCTGCTGCCTACTCTGACCTTGATTCTCCGTCTC
TAGAAGAGATTGCCGAGAGTAATCAGGGGGGCATGGACTTTGGTTCGTGT
GCCTGGACCTTGCCCAACGCCATCCGGTGTGTGTAG
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