mRNA_L-elsbetiae_contig13516.2693.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13516.2693.1
Unique NamemRNA_L-elsbetiae_contig13516.2693.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13516.2693.1 vs. uniprot
Match: D8LQ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ27_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.390e-62
Identity = 114/163 (69.94%), Postives = 131/163 (80.37%), Query Frame = 1 
Query:   67 MLAAPTPGRETEGERTWVMARRVASSWEKEGKNGGXXXXXXXXXVSPEVEQPSPSASRTFVSTRLRHLRLSPDGTTLVVKSDDKGGADHELALDELLEVHETPSEETVTLIGRDIEILIAFKGQAKALKQFRNMLVPAGSSGTVNTITGGEDGSAATTVTTIK 555
            M+AAPTPGRE+EGERTW+MA+RVAS+WEKE ++            +PE  QPSP+  +TFVSTRLRHLRLSPDGTTLVVKS+ +GG DHELALDELLEVHETPSEE+VTL+G DIEI IAFKGQAKALKQFRNMLVP G++GT  T     D   +TTVTTIK
Sbjct:    1 MMAAPTPGRESEGERTWIMAKRVASNWEKEDESS------RNRLSAPEASQPSPAVPKTFVSTRLRHLRLSPDGTTLVVKSE-QGGVDHELALDELLEVHETPSEESVTLMGTDIEIRIAFKGQAKALKQFRNMLVPTGTTGT--TTPSEVDADRSTTVTTIK 154
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13516.2693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ27_ECTSI1.390e-6269.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13516contigL-elsbetiae_contig13516:412..3785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001190.1
Exons3
Model size555
Cds size555
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13516.2693.1prot_L-elsbetiae_contig13516.2693.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13516 412..3785 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.9026458-CDS-L-elsbetiae_contig13516:411..6061622815520.9026458-CDS-L-elsbetiae_contig13516:411..606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13516 412..606 -
1691682938.4255369-CDS-L-elsbetiae_contig13516:411..6061691682938.4255369-CDS-L-elsbetiae_contig13516:411..606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13516 412..606 -
1622815520.91284-CDS-L-elsbetiae_contig13516:2637..27551622815520.91284-CDS-L-elsbetiae_contig13516:2637..2755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13516 2638..2755 -
1691682938.4340162-CDS-L-elsbetiae_contig13516:2637..27551691682938.4340162-CDS-L-elsbetiae_contig13516:2637..2755Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13516 2638..2755 -
1622815520.9291055-CDS-L-elsbetiae_contig13516:3543..37851622815520.9291055-CDS-L-elsbetiae_contig13516:3543..3785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13516 3544..3785 -
1691682938.4435723-CDS-L-elsbetiae_contig13516:3543..37851691682938.4435723-CDS-L-elsbetiae_contig13516:3543..3785Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13516 3544..3785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13516.2693.1

>prot_L-elsbetiae_contig13516.2693.1 ID=prot_L-elsbetiae_contig13516.2693.1|Name=mRNA_L-elsbetiae_contig13516.2693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
GGSAGDPGSSASPFRSTPGVDEMLAAPTPGRETEGERTWVMARRVASSWE
KEGKNGGGNGSSGGGGVSPEVEQPSPSASRTFVSTRLRHLRLSPDGTTLV
VKSDDKGGADHELALDELLEVHETPSEETVTLIGRDIEILIAFKGQAKAL
KQFRNMLVPAGSSGTVNTITGGEDGSAATTVTTIK
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mRNA from alignment at L-elsbetiae_contig13516:412..3785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13516.2693.1 ID=mRNA_L-elsbetiae_contig13516.2693.1|Name=mRNA_L-elsbetiae_contig13516.2693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3374bp|location=Sequence derived from alignment at L-elsbetiae_contig13516:412..3785- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCAGTGCCGGGGATCCCGGCTCCTCCGCCTCACCCTTCCGCTCCAC
CCCCGGCGTCGACGAGATGCTGGCGGCGCCGACCCCCGGCCGGGAGACGG
AGGGCGAGAGGACGTGGGTCATGGCCAGGCGGGTCGCTTCCAGCTGGGAG
AAGGAGGGAAAGAATGGCGGCGGTAACGGTAGCAGCGGCGGCGGCGGCGT
GTCGCCGGAGGTGGAGCAGCCTTCGCCGTCGGCCTCAAGGACGTGAGTTT
TCTCTGTGGGTTTTGGGGTCTTGAGGAGGGGGGCACGGGGGGGGGGGGGG
GTGATTGGCACGCCTTTGTGCGTGTGTGTGTGCGCGCGTGAGCGTCTGCG
TCTGCGTCTGCGTCTGCGTCCGCGTTTGTTCGTCCCCATATCTATTCCGG
CGTCTTGTCACATTCCGGCGTAAGCTGCTACTTACACTCCATGTTTCGGT
GCTGTGTACTTCGCATTAGACGCACGTTTGAATGTATGTACCACGGGAAC
TGACCGCATCATGTGTTGGACTAGTACGAACATATGGAGGTACTGGGTGG
AGAGATCGGAAAGTTTTTTTTTTTTTAATGCGAAGAAACAACAATGCACT
ACATGGCTGAGGTCACTCCAAGAAGCGTGTGTGGGTAGAACACTTTTTTT
TTGTACCTGCCTGATACCTTGCGGGATCGGCCCTAGTGAATTACGAGAAA
ACATATGTATGTACATATTGGCACCGCAGGAGGGGGTCCACACACCCCAC
CTGTGTGACCCCGGCTGGGTCGTCTAAGCCAGTCGTGCTGGAGAAAGGGG
GCCAGTGGGGCAGACGACGAATAAGCCAATAATATAAGAAAGAAAATAAA
ACATACCTATATAGGCTACATACTCCGAACATGCGTATGTCTACATACAT
ACGAAGTACATATTGATGATAAATAATACTTCGAAGTAAGATAATATGGC
TCTTTTTTTTATATACATGAACATTCAAAAGAAAAACAAATGTAAACAAA
TGATTGATTGATTGCTTGGTGCGAACACAGGTTCGTGTCGACGCGGCTGC
GGCACCTCCGCCTGTCCCCCGACGGGACCACGCTCGTGGTGAAGTCGGAC
GACAAGGGCGGCGCGGACCACGAGCTGGCACTGGACGAACTCCTGGAGGT
GAGTACTGAATACTCCTCCGTATATGTATGTATGTTGGCTTCACATTAAA
AACCGTTCCGATCTCTCCATCCAGTACCTCTCAATGTATGTCCGTACTAC
TCCAACACTTGATGCGGTCAACTCCCGTGGTCACAGGCTAACTTATACCT
AAGAAAAGGTACACGAAAAATAAAATGGACCCGTCCGTAGAAGTAAATTT
AGTATTTGGTGTAGATACATATACAAATTGGTCTCTAGGAACTTCTGTTC
CGAAATCTGAATCTGTGGGCTGTCGGTAGGCTGTCGGCCTCCAACAGCCC
AAACAAACGTTACATGACAGCGGCTGTCTCTTTCCAGTTGAAGAAAAATA
CGTCAGCAGCTGTCTCTTTCCGGTGGAACAAAAAGCGCACTGCTGAGGGG
CACAGACCTGCACAGCTGTGTCGACAAGTGCGGAGCGTGTTGATCAAGGC
GGAGCGTCCGCACAGGCACCTGGTTCAGTGCTGTTGCTGTGTTTTCGTCT
GATCCACAATAAAACGCGACACCAAAGCTGCTTTTTGCGTTTGTTTGGGT
TCAAAATCTTTGGTTCAAAGATCTGGGTTCAAAAATCGTTTTGCTGTGGG
GGTTTTGCACAACCCCCTGTCGCTGTGCTCTCACGAGTTTGCTCCGAAGG
GGTATCTTGTACAGTTATACCGAATCGCCTCTTGAGTTAGTTCCCCCCGA
GGGTGTCAACATGTACCATGTACCGAATCTTCTCTTGAGTTACCCCGGGG
TGTAAACATGTACCATACAATATACCGAATCGTCTCTTGAGTTACCTCCG
GGGGTGTCAACATGTACAATGTGCCGAATCGTCTCTTGAGTTGGTTCCCC
CCGCGGTTGTAAACATGTACCATATACCGAATCGTCTCGTGAGTTCCCCC
GGGGTGTAAACATTTGACGTTTTTCAAAGCCGATTTTCTCCGAGATGGGG
GTGGTGCTGTTCTGAATAAATAAATACCCCGGAGTATAAATAAAACCCGG
AGTATTGCGGAGCGATGCGTGCGCCCTTGGAAGGGTCAGGTTAGGGTTTC
ATCGAGACATTTGTTTCAAATTCATGCTTTTTGTTCATTCCTATTCTACC
CTCTCGGTTGATTCTATTCTACCCTCTCGGTTGTGGAGAAAAAAATCGGC
TTCGGAAATTGTTTTACGCCCCGGGGGGGCTCGAAAAGAAGATTACGGTA
TGTATGTACCCTCGAAATGGCCTTTTCACGCCAGCGAACCATCGGATACG
TTTTGCGGGTTTTAAAAATAAACAATGAATCAAAGATGGAACCTAACCCA
CACTAGAGCAAGGACTCGATATGGGGTTCAAACGGTATTCCATACAGAGA
CGTAATATTTGGCGAAGTGAGCAGAAAAAACAGACCTAAAATGTATCAGA
AGAGTTCAACATCTCCCCTGCAAAGATTTAGATTTACGAGGTCGGCCAAC
AAGTGTTGTGCATGCATGCAACAGAGTAGTGCCGTAGGTGTCACAAGATA
CCACACCACCCCCCTCGACCGAATTTTAGAGCTCCATTACTTCGTAGTAT
CGAAGGTGCCAGCACCAAACGACACATTTTCGGACAGCCCTCGACTAGAT
CTTTCCCAACGCAACGCCGCCCTATTTTCAGCACTTTCACCTTTTTTGAT
GGAAGAAGAATCGAGCTTTGAAGATCCGTCCAGGGAGTGTGGTATCTTGT
GTTACCTACGGTACACAAACCACGCGTGGTCAACGTGTATGTAGTACTAC
CCCCACCCCTCTCCGTGTTTCGACAAGTTGTCTAAGTGTGTACACACATA
CTCCTAGTGGATTAACAACAAAGCACCGCAGGAGGGGGTCCAACCCCACC
TCCTGTGTGACCCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAAGAAGGG
GGCCAGTGGGGCAGACGACGAATAAGCAATAATGCGAAAGACGAAAAAAA
ACTCCTACCATAGTTTTTGGTTGCTCGACGCGTGAGTCCCCACCCACCCA
CCCCCCGTGTTCATTTATTTATTGCGCAGGTGCACGAAACCCCCTCGGAG
GAGACCGTGACCCTCATAGGCAGGGACATCGAGATCCTTATCGCCTTCAA
GGGCCAGGCCAAGGCCCTCAAGCAGTTCCGCAACATGCTCGTGCCCGCGG
GCAGCAGCGGCACCGTGAACACCATCACGGGGGGAGAGGACGGCTCGGCG
GCCACGACGGTGACCACCATAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13516:412..3785-

>mRNA_L-elsbetiae_contig13516.2693.1 ID=mRNA_L-elsbetiae_contig13516.2693.1|Name=mRNA_L-elsbetiae_contig13516.2693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig13516:412..3785- (Laminarionema elsbetiae ELsaHSoW15)
GGCGGCAGTGCCGGGGATCCCGGCTCCTCCGCCTCACCCTTCCGCTCCAC
CCCCGGCGTCGACGAGATGCTGGCGGCGCCGACCCCCGGCCGGGAGACGG
AGGGCGAGAGGACGTGGGTCATGGCCAGGCGGGTCGCTTCCAGCTGGGAG
AAGGAGGGAAAGAATGGCGGCGGTAACGGTAGCAGCGGCGGCGGCGGCGT
GTCGCCGGAGGTGGAGCAGCCTTCGCCGTCGGCCTCAAGGACGGCGGCAG
TGCCGGGGATCCCGGCTCCTCCGCCTCACCCTTCCGCTCCACCCCCGGCG
TCGACGAGATGCTGGCGGCGCCGACCCCCGGCCGGGAGACGGAGGGCGAG
AGGACGTGGGTCATGGCCAGGCGGGTCGCTTCCAGCTGGGAGAAGGAGGG
AAAGAATGGCGGCGGTAACGGTAGCAGCGGCGGCGGCGGCGTGTCGCCGG
AGGTGGAGCAGCCTTCGCCGTCGGCCTCAAGGACGTTCGTGTCGACGCGG
CTGCGGCACCTCCGCCTGTCCCCCGACGGGACCACGCTCGTGGTGAAGTC
GGACGACAAGGGCGGCGCGGACCACGAGCTGGCACTGGACGAACTCCTGG
AGGTTCGTGTCGACGCGGCTGCGGCACCTCCGCCTGTCCCCCGACGGGAC
CACGCTCGTGGTGAAGTCGGACGACAAGGGCGGCGCGGACCACGAGCTGG
CACTGGACGAACTCCTGGAGGTGCACGAAACCCCCTCGGAGGAGACCGTG
ACCCTCATAGGCAGGGACATCGAGATCCTTATCGCCTTCAAGGGCCAGGC
CAAGGCCCTCAAGCAGTTCCGCAACATGCTCGTGCCCGCGGGCAGCAGCG
GCACCGTGAACACCATCACGGGGGGAGAGGACGGCTCGGCGGCCACGACG
GTGACCACCATAAAGGTGCACGAAACCCCCTCGGAGGAGACCGTGACCCT
CATAGGCAGGGACATCGAGATCCTTATCGCCTTCAAGGGCCAGGCCAAGG
CCCTCAAGCAGTTCCGCAACATGCTCGTGCCCGCGGGCAGCAGCGGCACC
GTGAACACCATCACGGGGGGAGAGGACGGCTCGGCGGCCACGACGGTGAC
CACCATAAAG
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