mRNA_L-elsbetiae_contig13503.2687.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13503.2687.1
Unique NamemRNA_L-elsbetiae_contig13503.2687.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13503.2687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13503contigL-elsbetiae_contig13503:2357..3860 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size460
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.5118148-CDS-L-elsbetiae_contig13503:2357..25991622815520.5118148-CDS-L-elsbetiae_contig13503:2357..2599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13503 2358..2599 -
1691682938.2275643-CDS-L-elsbetiae_contig13503:2357..25991691682938.2275643-CDS-L-elsbetiae_contig13503:2357..2599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13503 2358..2599 -
1622815520.5240128-CDS-L-elsbetiae_contig13503:3643..38601622815520.5240128-CDS-L-elsbetiae_contig13503:3643..3860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13503 3644..3860 -
1691682938.2478335-CDS-L-elsbetiae_contig13503:3643..38601691682938.2478335-CDS-L-elsbetiae_contig13503:3643..3860Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13503 3644..3860 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13503.2687.1prot_L-elsbetiae_contig13503.2687.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13503 2358..3860 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13503.2687.1

>prot_L-elsbetiae_contig13503.2687.1 ID=prot_L-elsbetiae_contig13503.2687.1|Name=mRNA_L-elsbetiae_contig13503.2687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
PPGDKDGSASEVSLDSPAGTLMTTILQPQNGRLAEAGAWSPIAHPQAPGL
QQGRLSRTSSGSSSSGRGLAAAAVLAGNSISDLPAPTGNPEPQQRQQRQG
RATGGSGSTGGSRPRLSANGEKVAGPSSSRPPAMKGEKMAGPSLRSATAF
GDR
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mRNA from alignment at L-elsbetiae_contig13503:2357..3860-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13503.2687.1 ID=mRNA_L-elsbetiae_contig13503.2687.1|Name=mRNA_L-elsbetiae_contig13503.2687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1504bp|location=Sequence derived from alignment at L-elsbetiae_contig13503:2357..3860- (Laminarionema elsbetiae ELsaHSoW15)
CCACCGGGCGACAAGGACGGGTCTGCATCTGAAGTATCGTTGGACTCACC
CGCGGGCACTCTCATGACGACCATACTCCAGCCGCAGAACGGTCGTCTGG
CGGAAGCGGGTGCTTGGAGTCCTATAGCGCATCCCCAGGCTCCTGGTCTG
CAGCAGGGGCGCCTCTCTCGGACATCCTCGGGGTCGAGTTCCTCGGGACG
AGGATTAGCAGCAGCAGGTGAACAGAGCGTTGTGTTCTGCTCTTACACTG
CCGCACTTCATAAACTAAAGCAGCTTGGCTGTGTAGCGCTGCCTTTACAA
ACTTGGAGTGGTTATACTTTTTATCAGCAGCAGTTTCGTGTTTCGTCGGT
GCGTCGGCAAGGATGACGAAAAGAACATCATTCATGTTTTTATCAAAAAG
ACGCCGCTTTTTCATTCCGGTTCTGCAAAGGGCGTCCCTACAATAGGATG
CCGTAGGGGGCGAGGGAATGAAGATCTCACAAACCGCTGGGCTCCTTTCC
GTTTACATCAAAAGCGGCGATTCCCTCTCTCTTCGCCATCCTCTCCGTTG
TCTAATGGTTGTGCCCCGTGAAAGTAACGGTAGTAGATTTCTTTCAAAAT
TTGATTATACATACCCACCTCATTTGTTGGGAGTTAACCGGAGGATGTGT
CCGCACGGACAGCATCAGCGGCAGTGACTAAAGCGATCCGCTCGTCACAC
GTCAAAACTCCCCAAGCGTGGGTCAATTTTTTTTTAAACAACAGGAAATC
AAATAAAAGAACCCTTCACACAAAGGAGAGATGGTCTTTTTTGTTTTCGC
TGCGCGGAGAGACTTTTTTCCTGTCTCAATTACATACGTTGAAAACCGTT
CCGACCTCTCTGTTGTATCCAGTACCTCCTTGCCCGCACTAGTCCAATGA
TTGCCCTCGATAGGGTTACTGAAAACGAAAATCGACCGAAAGAGTCGGTA
AAGCAAAGATTTCATTGCGGAGAGATTAGTTTTCCTTGTTTTTTTTTCCG
TGTCGGCCGCGATTGGGTGGTGCTGTCAGCAGATACCTAGCAGCACCACA
CACACACGCTTATAATATTCGCGGACTTGGTGCATCTGCGTGTCTCTGAG
TGTGACTCCGGGGGGACAGGTTGTCGCTGTTGTATCACCTATCAAAATAA
ATAACTTGAATCGCGGCCCACTTTATCAGATGTCAAGAACCGCGCCCCCC
CCGACCCCTCCTCCTTGCCTTCGCATGTCCCACCCGAATCTCGAAACGCC
AAACAAACCAGCTGTTTTAGCAGGCAACAGCATAAGCGACCTACCGGCGC
CCACGGGCAACCCAGAACCGCAGCAGCGGCAGCAGCGGCAAGGGAGGGCC
ACGGGCGGCTCAGGTTCGACGGGTGGGTCCCGACCAAGGCTGTCGGCGAA
TGGCGAGAAAGTCGCTGGGCCATCATCGTCGCGGCCGCCGGCCATGAAGG
GCGAGAAAATGGCGGGGCCGTCCTTGCGCTCGGCGACGGCGTTTGGGGAT
AGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13503:2357..3860-

>mRNA_L-elsbetiae_contig13503.2687.1 ID=mRNA_L-elsbetiae_contig13503.2687.1|Name=mRNA_L-elsbetiae_contig13503.2687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig13503:2357..3860- (Laminarionema elsbetiae ELsaHSoW15)
CCACCGGGCGACAAGGACGGGTCTGCATCTGAAGTATCGTTGGACTCACC
CGCGGGCACTCTCATGACGACCATACTCCAGCCGCAGAACGGTCGTCTGG
CGGAAGCGGGTGCTTGGAGTCCTATAGCGCATCCCCAGGCTCCTGGTCTG
CAGCAGGGGCGCCTCTCTCGGACATCCTCGGGGTCGAGTTCCTCGGGACG
AGGATTAGCAGCAGCAGCCACCGGGCGACAAGGACGGGTCTGCATCTGAA
GTATCGTTGGACTCACCCGCGGGCACTCTCATGACGACCATACTCCAGCC
GCAGAACGGTCGTCTGGCGGAAGCGGGTGCTTGGAGTCCTATAGCGCATC
CCCAGGCTCCTGGTCTGCAGCAGGGGCGCCTCTCTCGGACATCCTCGGGG
TCGAGTTCCTCGGGACGAGGATTAGCAGCAGCAGCTGTTTTAGCAGGCAA
CAGCATAAGCGACCTACCGGCGCCCACGGGCAACCCAGAACCGCAGCAGC
GGCAGCAGCGGCAAGGGAGGGCCACGGGCGGCTCAGGTTCGACGGGTGGG
TCCCGACCAAGGCTGTCGGCGAATGGCGAGAAAGTCGCTGGGCCATCATC
GTCGCGGCCGCCGGCCATGAAGGGCGAGAAAATGGCGGGGCCGTCCTTGC
GCTCGGCGACGGCGTTTGGGGATAGACTGTTTTAGCAGGCAACAGCATAA
GCGACCTACCGGCGCCCACGGGCAACCCAGAACCGCAGCAGCGGCAGCAG
CGGCAAGGGAGGGCCACGGGCGGCTCAGGTTCGACGGGTGGGTCCCGACC
AAGGCTGTCGGCGAATGGCGAGAAAGTCGCTGGGCCATCATCGTCGCGGC
CGCCGGCCATGAAGGGCGAGAAAATGGCGGGGCCGTCCTTGCGCTCGGCG
ACGGCGTTTGGGGATAGA
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