mRNA_L-elsbetiae_contig13500.2686.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13500.2686.1
Unique NamemRNA_L-elsbetiae_contig13500.2686.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13500.2686.1 vs. uniprot
Match: A0A6H5JTZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ5_9PHAE)

HSP 1 Score: 667 bits (1722), Expect = 2.360e-229
Identity = 324/476 (68.07%), Postives = 388/476 (81.51%), Query Frame = 3 
Query:   90 VACLLWGTGQATGAVIVQYEFSQDECRRGAAEDLAGGQRYFGDMILDNSTTSCLSGIGMERTSESPGSPGASSVGDTTVLREDLSRSASSPGQFSLELWLSIDRMPACDRYCTTPIVTIGERGVSIDDDCQENLGMMLTYWTGTGEFGARFQSTTRDTCEWFWPGAEQPAENMGNAMHVVFTVDREEFFGNPYAYFEWFINGTRVAWDLSQYVPPLTMMATWDSGFNLQILDWSRQFPSSFYREGPGIKIFFLAIHNETLNSTEVLSRYATRIRHSTPIVRNTTVDVAEDGENGDHYEEPEFYLQVFPHSELQLIPLDVYDSDNDPATPNFDY-TNPRVFVSALPYPGYLVNSSDEIIVHVPFEVFGEDGVFSVRYRPVLNDFSTNVTANDSVPYANFSFYATDEEDNTRSHTNATVSIYVYPKNDPPEALAASHVVYAGTRSNILPLEGIDRESFDNVYGAAIVESPTRGSLFQV 1514
            +A LL GT Q+  AV++QYEFSQ+ECRRG   D+AGG R+FGD+ LDNST SCL G+G+ERTS SPGSPGASS+G+TT+LRE+L    SSPG FSLELWLS+  MPACD +CTTPIVTIGE   S+DDDCQ+NLGMM+TYWT TG+FGARF S   D CE  W GA QP+E+MG A+H+V T+D   F+G PYAYF W+INGTRVA DLS+ VPP TMM  WDS FN+Q+LDWSRQ PSSFY EGPGIKIF+LAIH+ETL+ TE++SRY+ R+ +STP+V +TT+ VAEDGE GDHYE+P+ YLQVFP SELQ++PLDVYDSDNDPATPN+D  T+PRVFV+ LP+ G LVNSS + I  VPFEV  + G F+VRYRP+LNDFSTN    DSV YANFSFYATD E  TRSHTNATVS+YV+ KNDPP+AL ASH V+AG+R N +PL G D ++FD+V+GAAIVE P RG+LFQV
Sbjct:    9 LAYLLGGTCQSNAAVLIQYEFSQEECRRGVVADVAGGNRFFGDLSLDNSTASCLPGVGIERTSASPGSPGASSIGNTTLLREELLNDDSSPGHFSLELWLSVPEMPACDGFCTTPIVTIGEGDTSLDDDCQQNLGMMITYWTETGDFGARFMSID-DECERLWSGAIQPSESMGYALHLVLTIDSIVFYGEPYAYFRWYINGTRVARDLSKDVPPETMMTLWDSDFNMQLLDWSRQIPSSFYTEGPGIKIFYLAIHDETLDVTEIVSRYSARVTNSTPVVSDTTIGVAEDGEEGDHYEDPQSYLQVFPVSELQMVPLDVYDSDNDPATPNYDNSTSPRVFVNTLPFLGSLVNSSGDDISSVPFEVLEDAGAFAVRYRPILNDFSTN----DSVVYANFSFYATDGESGTRSHTNATVSMYVFSKNDPPQALNASHGVFAGSRENFIPLNGTDMDAFDDVHGAAIVEPPARGTLFQV 479
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BLAST of mRNA_L-elsbetiae_contig13500.2686.1 vs. uniprot
Match: A0A835Z5G0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G0_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.260e-23
Identity = 78/235 (33.19%), Postives = 118/235 (50.21%), Query Frame = 3 
Query:  837 IFFLAIHNETLNSTEVLSRYATRIRHSTPIVRNTTVDVAEDGENGDHYEEPEFYLQVFPHSELQLIPLDVYDSDNDPATPN----FDYTNPRV--FVSALPYPGYLVNSSDEIIVHVPFEVFGEDGVFSVRYRPVLNDFSTNVTANDSVPYANFSFYATDEEDNTRSHTNATVSIYVYPKNDPPEALAASHVVYAGTRS---NILPLEGIDRESFDNVYGAAIVESPTRGSLFQV 1514
            ++  A++   L + E+ + +     ++ P V +    V EDGE GDHY+ PE+YL   P ++L ++ L  YD + D A  N    ++ +NP +  +V+A P  G L +S+   IV             +VRYRP  N+ S    A     YA F+FYA D     RS   AT ++YV  KNDPP A AA+  V A + +    +  + G D ++ D V  A +  +P RG LF V
Sbjct:  233 LYLAALYARALTAEEITANFKALWPNNAPSVADVAFTVNEDGEAGDHYDTPEYYLSAVPFADLAVLTLPAYDFEADAAANNVTAVYNASNPVIAYYVAAAPLAGTLYDSAGAAIVASLSTPPAALPSGAVRYRPAANESSAGGAA-----YAAFTFYAVDGA-GARSAGTATATLYVRAKNDPPAAAAAAFSVPASSAAAADTVFCVNGTDPDAGDAVTHAVLRSAPARGRLFAV 461
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13500.2686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTZ5_9PHAE2.360e-22968.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5G0_9STRA8.260e-2333.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13500contigL-elsbetiae_contig13500:580..2108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size1529
Cds size1470
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.3079467-UTR-L-elsbetiae_contig13500:579..6381622815520.3079467-UTR-L-elsbetiae_contig13500:579..638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13500 580..638 +
1691682938.2029953-UTR-L-elsbetiae_contig13500:579..6381691682938.2029953-UTR-L-elsbetiae_contig13500:579..638Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13500 580..638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.3222597-CDS-L-elsbetiae_contig13500:638..21081622815520.3222597-CDS-L-elsbetiae_contig13500:638..2108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13500 639..2108 +
1691682938.2139986-CDS-L-elsbetiae_contig13500:638..21081691682938.2139986-CDS-L-elsbetiae_contig13500:638..2108Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13500 639..2108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13500.2686.1prot_L-elsbetiae_contig13500.2686.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13500 639..2108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13500.2686.1

>prot_L-elsbetiae_contig13500.2686.1 ID=prot_L-elsbetiae_contig13500.2686.1|Name=mRNA_L-elsbetiae_contig13500.2686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=490bp
MAGVMAERCAVACLLWGTGQATGAVIVQYEFSQDECRRGAAEDLAGGQRY
FGDMILDNSTTSCLSGIGMERTSESPGSPGASSVGDTTVLREDLSRSASS
PGQFSLELWLSIDRMPACDRYCTTPIVTIGERGVSIDDDCQENLGMMLTY
WTGTGEFGARFQSTTRDTCEWFWPGAEQPAENMGNAMHVVFTVDREEFFG
NPYAYFEWFINGTRVAWDLSQYVPPLTMMATWDSGFNLQILDWSRQFPSS
FYREGPGIKIFFLAIHNETLNSTEVLSRYATRIRHSTPIVRNTTVDVAED
GENGDHYEEPEFYLQVFPHSELQLIPLDVYDSDNDPATPNFDYTNPRVFV
SALPYPGYLVNSSDEIIVHVPFEVFGEDGVFSVRYRPVLNDFSTNVTAND
SVPYANFSFYATDEEDNTRSHTNATVSIYVYPKNDPPEALAASHVVYAGT
RSNILPLEGIDRESFDNVYGAAIVESPTRGSLFQVCRTR*
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mRNA from alignment at L-elsbetiae_contig13500:580..2108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13500.2686.1 ID=mRNA_L-elsbetiae_contig13500.2686.1|Name=mRNA_L-elsbetiae_contig13500.2686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1529bp|location=Sequence derived from alignment at L-elsbetiae_contig13500:580..2108+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAAAGATAACGGTCCGACCGCTACCGTAAACTGAATTCGAGCCTCAAA
TTAGAGCACATGGCGGGCGTGATGGCGGAAAGGTGCGCCGTAGCTTGCCT
ACTATGGGGTACGGGTCAGGCAACTGGTGCAGTTATTGTCCAGTACGAGT
TTTCTCAAGATGAATGCCGACGTGGGGCAGCTGAAGATTTAGCAGGCGGA
CAGCGATATTTCGGCGACATGATCCTAGACAATTCCACGACATCCTGCTT
GTCCGGGATAGGAATGGAGCGAACATCGGAATCGCCGGGATCACCAGGTG
CCTCGTCTGTTGGAGACACAACAGTTTTGCGCGAGGATTTATCGAGAAGT
GCTTCTTCTCCAGGCCAGTTCTCGCTGGAGCTATGGCTCAGCATTGACAG
GATGCCCGCATGCGATAGGTACTGTACAACTCCTATTGTAACAATTGGGG
AACGAGGTGTGAGTATAGACGACGATTGCCAAGAGAATCTAGGCATGATG
CTCACATACTGGACCGGGACCGGTGAGTTTGGGGCCCGCTTCCAGTCAAC
TACAAGGGATACGTGCGAATGGTTCTGGCCCGGTGCGGAACAGCCAGCTG
AGAACATGGGGAACGCTATGCACGTCGTGTTTACAGTGGATAGAGAGGAG
TTTTTCGGGAACCCCTACGCCTATTTTGAGTGGTTCATCAACGGCACACG
AGTGGCATGGGACCTGAGCCAATACGTCCCACCTTTAACTATGATGGCAA
CGTGGGATTCTGGCTTCAATCTTCAAATACTTGATTGGAGTCGTCAATTT
CCTAGCTCCTTTTATCGAGAGGGGCCAGGGATCAAGATATTTTTTCTCGC
AATTCACAACGAAACGTTGAATAGCACCGAAGTACTCTCAAGGTATGCTA
CTCGGATCCGCCACAGCACCCCGATCGTTCGCAACACAACCGTAGATGTT
GCGGAGGATGGTGAAAATGGGGATCATTACGAAGAACCTGAGTTCTACCT
TCAGGTATTTCCGCACTCGGAGCTCCAGCTAATTCCACTCGATGTATATG
ATTCGGACAACGATCCTGCAACACCGAACTTCGACTACACCAACCCCAGG
GTGTTTGTCTCAGCGCTACCATACCCAGGCTACCTCGTAAACTCTTCAGA
TGAAATCATCGTACATGTACCATTCGAAGTTTTCGGAGAGGATGGAGTAT
TCAGCGTCAGATATCGGCCGGTTTTGAACGACTTCTCGACCAACGTGACC
GCCAACGACTCGGTTCCGTACGCCAATTTTTCCTTTTATGCAACTGATGA
AGAGGACAATACACGGAGCCATACGAACGCAACAGTTTCCATTTACGTGT
ACCCGAAAAATGACCCTCCGGAGGCACTTGCCGCTAGCCACGTCGTATAC
GCCGGGACTCGGAGTAACATCTTACCCCTGGAAGGCATCGACAGGGAATC
TTTTGATAACGTCTATGGAGCGGCCATTGTGGAATCACCGACGAGAGGTT
CCTTGTTTCAGGTATGCCGTACTCGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13500:580..2108+

>mRNA_L-elsbetiae_contig13500.2686.1 ID=mRNA_L-elsbetiae_contig13500.2686.1|Name=mRNA_L-elsbetiae_contig13500.2686.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2940bp|location=Sequence derived from alignment at L-elsbetiae_contig13500:580..2108+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGCGTGATGGCGGAAAGGTGCGCCGTAGCTTGCCTACTATGGGG
TACGGGTCAGGCAACTGGTGCAGTTATTGTCCAGTACGAGTTTTCTCAAG
ATGAATGCCGACGTGGGGCAGCTGAAGATTTAGCAGGCGGACAGCGATAT
TTCGGCGACATGATCCTAGACAATTCCACGACATCCTGCTTGTCCGGGAT
AGGAATGGAGCGAACATCGGAATCGCCGGGATCACCAGGTGCCTCGTCTG
TTGGAGACACAACAGTTTTGCGCGAGGATTTATCGAGAAGTGCTTCTTCT
CCAGGCCAGTTCTCGCTGGAGCTATGGCTCAGCATTGACAGGATGCCCGC
ATGCGATAGGTACTGTACAACTCCTATTGTAACAATTGGGGAACGAGGTG
TGAGTATAGACGACGATTGCCAAGAGAATCTAGGCATGATGCTCACATAC
TGGACCGGGACCGGTGAGTTTGGGGCCCGCTTCCAGTCAACTACAAGGGA
TACGTGCGAATGGTTCTGGCCCGGTGCGGAACAGCCAGCTGAGAACATGG
GGAACGCTATGCACGTCGTGTTTACAGTGGATAGAGAGGAGTTTTTCGGG
AACCCCTACGCCTATTTTGAGTGGTTCATCAACGGCACACGAGTGGCATG
GGACCTGAGCCAATACGTCCCACCTTTAACTATGATGGCAACGTGGGATT
CTGGCTTCAATCTTCAAATACTTGATTGGAGTCGTCAATTTCCTAGCTCC
TTTTATCGAGAGGGGCCAGGGATCAAGATATTTTTTCTCGCAATTCACAA
CGAAACGTTGAATAGCACCGAAGTACTCTCAAGGTATGCTACTCGGATCC
GCCACAGCACCCCGATCGTTCGCAACACAACCGTAGATGTTGCGGAGGAT
GGTGAAAATGGGGATCATTACGAAGAACCTGAGTTCTACCTTCAGGTATT
TCCGCACTCGGAGCTCCAGCTAATTCCACTCGATGTATATGATTCGGACA
ACGATCCTGCAACACCGAACTTCGACTACACCAACCCCAGGGTGTTTGTC
TCAGCGCTACCATACCCAGGCTACCTCGTAAACTCTTCAGATGAAATCAT
CGTACATGTACCATTCGAAGTTTTCGGAGAGGATGGAGTATTCAGCGTCA
GATATCGGCCGGTTTTGAACGACTTCTCGACCAACGTGACCGCCAACGAC
TCGGTTCCGTACGCCAATTTTTCCTTTTATGCAACTGATGAAGAGGACAA
TACACGGAGCCATACGAACGCAACAGTTTCCATTTACGTGTACCCGAAAA
ATGACCCTCCGGAGGCACTTGCCGCTAGCCACGTCGTATACGCCGGGACT
CGGAGTAACATCTTACCCCTGGAAGGCATCGACAGGGAATCTTTTGATAA
CGTCTATGGAGCGGCCATTGTGGAATCACCGACGAGAGGTTCCTTGTTTC
AGGTATGCCGTACTCGTTGAATGGCGGGCGTGATGGCGGAAAGGTGCGCC
GTAGCTTGCCTACTATGGGGTACGGGTCAGGCAACTGGTGCAGTTATTGT
CCAGTACGAGTTTTCTCAAGATGAATGCCGACGTGGGGCAGCTGAAGATT
TAGCAGGCGGACAGCGATATTTCGGCGACATGATCCTAGACAATTCCACG
ACATCCTGCTTGTCCGGGATAGGAATGGAGCGAACATCGGAATCGCCGGG
ATCACCAGGTGCCTCGTCTGTTGGAGACACAACAGTTTTGCGCGAGGATT
TATCGAGAAGTGCTTCTTCTCCAGGCCAGTTCTCGCTGGAGCTATGGCTC
AGCATTGACAGGATGCCCGCATGCGATAGGTACTGTACAACTCCTATTGT
AACAATTGGGGAACGAGGTGTGAGTATAGACGACGATTGCCAAGAGAATC
TAGGCATGATGCTCACATACTGGACCGGGACCGGTGAGTTTGGGGCCCGC
TTCCAGTCAACTACAAGGGATACGTGCGAATGGTTCTGGCCCGGTGCGGA
ACAGCCAGCTGAGAACATGGGGAACGCTATGCACGTCGTGTTTACAGTGG
ATAGAGAGGAGTTTTTCGGGAACCCCTACGCCTATTTTGAGTGGTTCATC
AACGGCACACGAGTGGCATGGGACCTGAGCCAATACGTCCCACCTTTAAC
TATGATGGCAACGTGGGATTCTGGCTTCAATCTTCAAATACTTGATTGGA
GTCGTCAATTTCCTAGCTCCTTTTATCGAGAGGGGCCAGGGATCAAGATA
TTTTTTCTCGCAATTCACAACGAAACGTTGAATAGCACCGAAGTACTCTC
AAGGTATGCTACTCGGATCCGCCACAGCACCCCGATCGTTCGCAACACAA
CCGTAGATGTTGCGGAGGATGGTGAAAATGGGGATCATTACGAAGAACCT
GAGTTCTACCTTCAGGTATTTCCGCACTCGGAGCTCCAGCTAATTCCACT
CGATGTATATGATTCGGACAACGATCCTGCAACACCGAACTTCGACTACA
CCAACCCCAGGGTGTTTGTCTCAGCGCTACCATACCCAGGCTACCTCGTA
AACTCTTCAGATGAAATCATCGTACATGTACCATTCGAAGTTTTCGGAGA
GGATGGAGTATTCAGCGTCAGATATCGGCCGGTTTTGAACGACTTCTCGA
CCAACGTGACCGCCAACGACTCGGTTCCGTACGCCAATTTTTCCTTTTAT
GCAACTGATGAAGAGGACAATACACGGAGCCATACGAACGCAACAGTTTC
CATTTACGTGTACCCGAAAAATGACCCTCCGGAGGCACTTGCCGCTAGCC
ACGTCGTATACGCCGGGACTCGGAGTAACATCTTACCCCTGGAAGGCATC
GACAGGGAATCTTTTGATAACGTCTATGGAGCGGCCATTGTGGAATCACC
GACGAGAGGTTCCTTGTTTCAGGTATGCCGTACTCGTTGA
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