mRNA_L-elsbetiae_contig10221.268.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10221.268.1
Unique NamemRNA_L-elsbetiae_contig10221.268.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10221.268.1 vs. uniprot
Match: A0A6H5JV35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.700e-33
Identity = 101/213 (47.42%), Postives = 112/213 (52.58%), Query Frame = 1 
Query:    1 VGSPLISKRVQKFIAEPAATLTASISVICSPLAEWHDPGRGFTTRVACSTGELAAAVDA----ASSGVXXXXXXXXXXXXVSNAVERAQTREIAAAAAA-PAAENEGEALSVSSLALASPPGIVAARSDGAVDCCAPCPPPSQRYRDGDGGTDGGGTRSRPRREGHNAAGVGDGXXXXXXXXXXXXXXXXXXXXXXXRKQPLTEPFVAWCVSR 624
            VGSPLISKRVQKFI+EPAATLTA +SVICSPLA WHDPGRGFTTR+ACST +LAAAVDA    +SSG             VSNAVERAQTR IA AA A P  +  G      S +L+ PP                 PP   +    DG            REG    G  DG                       ++QPLTEPFVAWCVSR
Sbjct:  951 VGSPLISKRVQKFISEPAATLTAPVSVICSPLAAWHDPGRGFTTRLACSTRDLAAAVDAGKGVSSSGGAIGGSELLALVDVSNAVERAQTRAIACAAVAGPVGDEAG------SSSLSRPPSS---------------PPRVAKRVAADG------------REGSEGRGCYDGVNDTSEGGRGPPAQQQ-------QQQPLTEPFVAWCVSR 1123
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BLAST of mRNA_L-elsbetiae_contig10221.268.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 6.150e-33
Identity = 116/216 (53.70%), Postives = 127/216 (58.80%), Query Frame = 1 
Query:    1 VGSPLISKRVQKFIAEPAATLTASISVICSPLAEWHDPGRGFTTRVACSTGELAAAVDA--ASSGVXXXXXXXXXXXXVSNAVERAQTREIAAAAAAPAAENEGEALSVSSLALASPP----GIVAARSDGAV--DCCAPCPPPSQRYRDGDGGTDGGGTRSRPRREGHNAAGVGDGXXXXXXXXXXXXXXXXXXXXXXXRKQPLTEPFVAWCVSR 624
            VGSPL SKRVQKFI+EPAATLTA +SVICSPL  WHDPGRGFTTR+A ST +LAAAVDA  +SSGV            VSNAVERAQTR IA AAA P  +  G   S  S   +SPP    G+ A   +G+   DC            DG   T  GG R  P  + H                  XXXXXXXXXXXXX  QPLTEPFVAWCVSR
Sbjct: 1223 VGSPLTSKRVQKFISEPAATLTAPVSVICSPLVAWHDPGRGFTTRLASSTRDLAAAVDAGVSSSGVAIGGSELLALVDVSNAVERAQTRAIACAAAGPIEDEAGS--SSLSRQPSSPPRVAKGVAAGGGEGSEGGDCY-----------DGVNDTSEGGRR--PPAQQH------------------XXXXXXXXXXXXXXPQPLTEPFVAWCVSR 1405
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10221.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JV35_9PHAE1.700e-3347.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMF2_ECTSI6.150e-3353.70Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10221contigL-elsbetiae_contig10221:797..2105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue5.4e-30
Seed eggNOG ortholog2880.D8LMF2
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryother localisation
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size627
Cds size624
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815252.7696025-CDS-L-elsbetiae_contig10221:797..12431622815252.7696025-CDS-L-elsbetiae_contig10221:797..1243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 798..1243 -
1691682797.4823089-CDS-L-elsbetiae_contig10221:797..12431691682797.4823089-CDS-L-elsbetiae_contig10221:797..1243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 798..1243 -
1622815252.7847662-CDS-L-elsbetiae_contig10221:1927..21051622815252.7847662-CDS-L-elsbetiae_contig10221:1927..2105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 1928..2105 -
1691682797.4928548-CDS-L-elsbetiae_contig10221:1927..21051691682797.4928548-CDS-L-elsbetiae_contig10221:1927..2105Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10221 1928..2105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10221.268.1prot_L-elsbetiae_contig10221.268.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10221 798..2105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10221.268.1

>prot_L-elsbetiae_contig10221.268.1 ID=prot_L-elsbetiae_contig10221.268.1|Name=mRNA_L-elsbetiae_contig10221.268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
VGSPLISKRVQKFIAEPAATLTASISVICSPLAEWHDPGRGFTTRVACST
GELAAAVDAASSGVACAGSELLALVDVSNAVERAQTREIAAAAAAPAAEN
EGEALSVSSLALASPPGIVAARSDGAVDCCAPCPPPSQRYRDGDGGTDGG
GTRSRPRREGHNAAGVGDGGGGEECCGADNGASQQTTPQQQKRKQPLTEP
FVAWCVSR
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mRNA from alignment at L-elsbetiae_contig10221:797..2105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10221.268.1 ID=mRNA_L-elsbetiae_contig10221.268.1|Name=mRNA_L-elsbetiae_contig10221.268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1309bp|location=Sequence derived from alignment at L-elsbetiae_contig10221:797..2105- (Laminarionema elsbetiae ELsaHSoW15)
GTGGGGTCTCCTCTGATCTCCAAGCGCGTTCAGAAGTTTATTGCCGAGCC
GGCCGCCACGCTCACTGCGTCGATCAGCGTCATCTGCAGCCCCCTCGCGG
AGTGGCACGACCCCGGCAGGGGTTTCACCACCAGGGTGGCGTGTTCTACG
GGGGAGCTCGCGGCAGCTGTAGACGCAGGTGAGACGCAACAGCTATGCTG
TTTGTTTGCCGCGGGAAAATACTTAGTGGATCGGTTCTTTGGAACGTTCC
CAAGAACACTCCCCGGGCGTACATAGAACGGCTCCTGGAACGGTTCCAGT
GTTGCGGGTGGAATCCTCTTCCAGATCTGCAGCCCTCGTGGGTGTCGGCA
GATTGTCGTATACTATCTTAGTCGCGTGGGCCTCCTGCTGCTCCCGCCTA
GTCGTCGAAGTTGCAAAACGGCAAGTGTGGAATTCGCTTTCGAGGGGTAT
ACATGTTTACTTCAAAGGAGATATGGAGACCATTCCCGACCCCTCTACCC
TCCCCTCCGTCAGCCGGGGCACGGCAGCAAGCGCGACCTTTTGTTCCCCT
TAACGAACTGCTACGGTCAAGAGCAGCGGGGGGAGGCATCTACGCTTGAG
ATCAGAGAACCGTGGTGCGGGCGGGCGCTGGTTCGGTTTCATGTTTGTAT
TTTTGTTTTAACAAACGTTCTACTAGAAGTACATGGTTCAGTGGCCAACC
TGTGGAAAAGGCTATTTCGTGGCTGATACACATTTCCTATGAAGTACATC
CAAACATGCCTCGGTATTTTGTTGTTGTCTTTCCAACGCGTCCGCCCCCT
TCCACCCATGTGATCGATGCCGTAAACCTGTCTTAACCTAATCTGTCTTG
TCTGGTGGGCAGCCTCGAGCGGAGTCGCGTGCGCCGGGAGCGAGCTGCTA
GCGCTCGTCGACGTCTCCAACGCGGTCGAGAGAGCGCAGACCAGGGAAAT
AGCTGCTGCCGCCGCCGCCCCCGCTGCCGAAAATGAAGGCGAAGCACTGT
CCGTCTCCTCGTTGGCGTTGGCATCTCCGCCGGGGATAGTGGCGGCGCGT
TCGGACGGAGCGGTGGACTGCTGCGCCCCCTGCCCCCCGCCCAGCCAGCG
CTACCGCGACGGCGACGGCGGCACTGACGGCGGCGGAACGCGGTCGCGGC
CACGACGGGAAGGTCACAATGCTGCTGGTGTTGGTGACGGTGGCGGCGGT
GAGGAGTGTTGTGGCGCCGACAACGGGGCTTCACAGCAAACGACACCACA
GCAGCAGAAACGAAAGCAGCCCCTGACCGAGCCGTTTGTGGCCTGGTGCG
TGTCCCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10221:797..2105-

>mRNA_L-elsbetiae_contig10221.268.1 ID=mRNA_L-elsbetiae_contig10221.268.1|Name=mRNA_L-elsbetiae_contig10221.268.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig10221:797..2105- (Laminarionema elsbetiae ELsaHSoW15)
GTGGGGTCTCCTCTGATCTCCAAGCGCGTTCAGAAGTTTATTGCCGAGCC
GGCCGCCACGCTCACTGCGTCGATCAGCGTCATCTGCAGCCCCCTCGCGG
AGTGGCACGACCCCGGCAGGGGTTTCACCACCAGGGTGGCGTGTTCTACG
GGGGAGCTCGCGGCAGCTGTAGACGCAGGTGGGGTCTCCTCTGATCTCCA
AGCGCGTTCAGAAGTTTATTGCCGAGCCGGCCGCCACGCTCACTGCGTCG
ATCAGCGTCATCTGCAGCCCCCTCGCGGAGTGGCACGACCCCGGCAGGGG
TTTCACCACCAGGGTGGCGTGTTCTACGGGGGAGCTCGCGGCAGCTGTAG
ACGCAGCCTCGAGCGGAGTCGCGTGCGCCGGGAGCGAGCTGCTAGCGCTC
GTCGACGTCTCCAACGCGGTCGAGAGAGCGCAGACCAGGGAAATAGCTGC
TGCCGCCGCCGCCCCCGCTGCCGAAAATGAAGGCGAAGCACTGTCCGTCT
CCTCGTTGGCGTTGGCATCTCCGCCGGGGATAGTGGCGGCGCGTTCGGAC
GGAGCGGTGGACTGCTGCGCCCCCTGCCCCCCGCCCAGCCAGCGCTACCG
CGACGGCGACGGCGGCACTGACGGCGGCGGAACGCGGTCGCGGCCACGAC
GGGAAGGTCACAATGCTGCTGGTGTTGGTGACGGTGGCGGCGGTGAGGAG
TGTTGTGGCGCCGACAACGGGGCTTCACAGCAAACGACACCACAGCAGCA
GAAACGAAAGCAGCCCCTGACCGAGCCGTTTGTGGCCTGGTGCGTGTCCC
GGCCTCGAGCGGAGTCGCGTGCGCCGGGAGCGAGCTGCTAGCGCTCGTCG
ACGTCTCCAACGCGGTCGAGAGAGCGCAGACCAGGGAAATAGCTGCTGCC
GCCGCCGCCCCCGCTGCCGAAAATGAAGGCGAAGCACTGTCCGTCTCCTC
GTTGGCGTTGGCATCTCCGCCGGGGATAGTGGCGGCGCGTTCGGACGGAG
CGGTGGACTGCTGCGCCCCCTGCCCCCCGCCCAGCCAGCGCTACCGCGAC
GGCGACGGCGGCACTGACGGCGGCGGAACGCGGTCGCGGCCACGACGGGA
AGGTCACAATGCTGCTGGTGTTGGTGACGGTGGCGGCGGTGAGGAGTGTT
GTGGCGCCGACAACGGGGCTTCACAGCAAACGACACCACAGCAGCAGAAA
CGAAAGCAGCCCCTGACCGAGCCGTTTGTGGCCTGGTGCGTGTCCCGG
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