mRNA_L-elsbetiae_contig135.2681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig135.2681.1
Unique NamemRNA_L-elsbetiae_contig135.2681.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig135.2681.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.010e-19
Identity = 54/90 (60.00%), Postives = 61/90 (67.78%), Query Frame = -1 
Query:    1 AAIIPTGGGGCGXXXXXXXXXLGEYKLGEGKDGLSDDGRHMESDDGDADGLVGSSFLNNYGDHGAIATAEGV---IVGGGA--EGWARVR 255
            AA I  GGG            LG+YK G+G D LSDDGRHM S+DGD DGLVGSSFL N+GDHGA+ATA GV   +VGGG   EGWA +R
Sbjct:  126 AAAIGDGGG--------DGERLGDYKAGDGNDALSDDGRHMGSEDGDTDGLVGSSFLTNFGDHGAVATAAGVSVGVVGGGGAVEGWAPIR 207
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BLAST of mRNA_L-elsbetiae_contig135.2681.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.910e-19
Identity = 49/69 (71.01%), Postives = 55/69 (79.71%), Query Frame = -1 
Query:    1 LGEYKLGEGKDGLSDDGRHMESDDGDADGLVGSSFLNNYGDHGAIATAEGV---IVGGGA--EGWARVR 192
            LG+YK G+G D LSDDGRHM S+DGD DGLVGSSFL N+GDHGA+ATA GV   +VGGG   EGWA VR
Sbjct:  373 LGDYKAGDGNDTLSDDGRHMGSEDGDTDGLVGSSFLTNFGDHGAVATAAGVSVGVVGGGGAVEGWAPVR 441
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig135.2681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHF4_ECTSI1.010e-1960.00Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L4C8_9PHAE1.910e-1971.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig135contigL-elsbetiae_contig135:41572..41972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.3823214-CDS-L-elsbetiae_contig135:41571..419701622815519.3823214-CDS-L-elsbetiae_contig135:41571..41970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig135 41572..41970 +
1691682937.6453328-CDS-L-elsbetiae_contig135:41571..419701691682937.6453328-CDS-L-elsbetiae_contig135:41571..41970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig135 41572..41970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig135.2681.1prot_L-elsbetiae_contig135.2681.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig135 41572..41970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig135.2681.1

>prot_L-elsbetiae_contig135.2681.1 ID=prot_L-elsbetiae_contig135.2681.1|Name=mRNA_L-elsbetiae_contig135.2681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
PDSRPPLCATADDHPFRRRYRAVIPVVVEEGAPHQAVGVPVIALHVPPVV
AEAVLTLTELVLSKTLAATAAAAATATAAGRNDGRRGPMFCQRRRMLASH
QQGAPTDGADPVVFYSLSAVIAVLFAPASLCPI
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mRNA from alignment at L-elsbetiae_contig135:41572..41972+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig135.2681.1 ID=mRNA_L-elsbetiae_contig135.2681.1|Name=mRNA_L-elsbetiae_contig135.2681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=401bp|location=Sequence derived from alignment at L-elsbetiae_contig135:41572..41972+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGACTCGCGCCCACCCCTCTGCGCCACCGCCGACGATCACCCCTTCCG
CCGTCGCTATCGCGCCGTGATCCCCGTAGTTGTTGAGGAAGGAGCTCCCC
ACCAGGCCGTCGGCGTCCCCGTCATCGCTCTCCATGTGCCGCCCGTCGTC
GCTGAGGCCGTCCTTACCCTCACCGAGCTTGTACTCTCCAAGACCCTCGC
CGCTACCGCTGCAGCCGCCGCCACAGCCACCGCCGCCGGTCGGAATGATG
GCCGCCGGGGGCCTATGTTTTGCCAGCGTAGGCGCATGCTCGCCTCCCAC
CAACAAGGAGCCCCGACTGACGGTGCTGACCCCGTCGTCTTCTACTCCCT
CTCCGCTGTGATCGCTGTTCTCTTCGCCCCCGCCAGCCTCTGTCCTATCT
A
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Coding sequence (CDS) from alignment at L-elsbetiae_contig135:41572..41972+

>mRNA_L-elsbetiae_contig135.2681.1 ID=mRNA_L-elsbetiae_contig135.2681.1|Name=mRNA_L-elsbetiae_contig135.2681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig135:41572..41972+ (Laminarionema elsbetiae ELsaHSoW15)
CCTGACTCGCGCCCACCCCTCTGCGCCACCGCCGACGATCACCCCTTCCG
CCGTCGCTATCGCGCCGTGATCCCCGTAGTTGTTGAGGAAGGAGCTCCCC
ACCAGGCCGTCGGCGTCCCCGTCATCGCTCTCCATGTGCCGCCCGTCGTC
GCTGAGGCCGTCCTTACCCTCACCGAGCTTGTACTCTCCAAGACCCTCGC
CGCTACCGCTGCAGCCGCCGCCACAGCCACCGCCGCCGGTCGGAATGATG
GCCGCCGGGGGCCTATGTTTTGCCAGCGTAGGCGCATGCTCGCCTCCCAC
CAACAAGGAGCCCCGACTGACGGTGCTGACCCCGTCGTCTTCTACTCCCT
CTCCGCTGTGATCGCTGTTCTCTTCGCCCCCGCCAGCCTCTGTCCTATCC
CTGACTCGCGCCCACCCCTCTGCGCCACCGCCGACGATCACCCCTTCCGC
CGTCGCTATCGCGCCGTGATCCCCGTAGTTGTTGAGGAAGGAGCTCCCCA
CCAGGCCGTCGGCGTCCCCGTCATCGCTCTCCATGTGCCGCCCGTCGTCG
CTGAGGCCGTCCTTACCCTCACCGAGCTTGTACTCTCCAAGACCCTCGCC
GCTACCGCTGCAGCCGCCGCCACAGCCACCGCCGCCGGTCGGAATGATGG
CCGCCGGGGGCCTATGTTTTGCCAGCGTAGGCGCATGCTCGCCTCCCACC
AACAAGGAGCCCCGACTGACGGTGCTGACCCCGTCGTCTTCTACTCCCTC
TCCGCTGTGATCGCTGTTCTCTTCGCCCCCGCCAGCCTCTGTCCTATC
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