mRNA_L-elsbetiae_contig13491.2675.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13491.2675.1
Unique NamemRNA_L-elsbetiae_contig13491.2675.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13491.2675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13491contigL-elsbetiae_contig13491:4487..5003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size517
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13491.2675.1prot_L-elsbetiae_contig13491.2675.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13491 4684..4992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.995956-UTR-L-elsbetiae_contig13491:4486..46831622815518.995956-UTR-L-elsbetiae_contig13491:4486..4683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13491 4487..4683 +
1691682937.4594476-UTR-L-elsbetiae_contig13491:4486..46831691682937.4594476-UTR-L-elsbetiae_contig13491:4486..4683Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13491 4487..4683 +
1622815519.0394642-UTR-L-elsbetiae_contig13491:4992..50031622815519.0394642-UTR-L-elsbetiae_contig13491:4992..5003Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13491 4993..5003 +
1691682937.477767-UTR-L-elsbetiae_contig13491:4992..50031691682937.477767-UTR-L-elsbetiae_contig13491:4992..5003Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13491 4993..5003 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.023106-CDS-L-elsbetiae_contig13491:4683..49921622815519.023106-CDS-L-elsbetiae_contig13491:4683..4992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13491 4684..4992 +
1691682937.4697304-CDS-L-elsbetiae_contig13491:4683..49921691682937.4697304-CDS-L-elsbetiae_contig13491:4683..4992Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13491 4684..4992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13491.2675.1

>prot_L-elsbetiae_contig13491.2675.1 ID=prot_L-elsbetiae_contig13491.2675.1|Name=mRNA_L-elsbetiae_contig13491.2675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MMAGEHTREPKTHRKPNATAEKTSRPQAEVAAISPRSLGGLFARHVTRPS
DVAIDVYIASRQGITSARTVPHALCIRMRVQHKKAVGVTLCTRGKEPIEN
WK*
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mRNA from alignment at L-elsbetiae_contig13491:4487..5003+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13491.2675.1 ID=mRNA_L-elsbetiae_contig13491.2675.1|Name=mRNA_L-elsbetiae_contig13491.2675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=517bp|location=Sequence derived from alignment at L-elsbetiae_contig13491:4487..5003+ (Laminarionema elsbetiae ELsaHSoW15)
GACAGTAGTGCCGATGGAGATCAAATACCCGCCTCGAACAAACGCGTAAT
TGGTGCTGGAGCTGACGTTGCGCGTCGCCCTGGTGGCATATTCGACCCTT
GTTTTGCGAATCCAACTCCACATGCTCTTCAGCGAGGCAGGCGCAAGTGG
CGGGCATATATGCCCATCCCTCCATGGGGGAGTACTAGCCTAACTCCATG
ATGGCGGGCGAGCACACCCGGGAACCAAAAACACATCGAAAACCAAACGC
GACAGCAGAAAAAACATCGCGACCCCAAGCCGAGGTCGCGGCCATTTCCC
CCCGCTCTCTTGGGGGATTGTTCGCCAGACATGTAACTCGCCCATCAGAC
GTCGCCATTGATGTGTACATCGCCTCCCGGCAGGGCATTACTTCGGCACG
TACCGTACCGCACGCGCTTTGTATTCGAATGCGAGTTCAACACAAAAAAG
CGGTGGGAGTAACGCTGTGCACACGTGGCAAGGAGCCCATCGAGAACTGG
AAATAAATGTGAACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13491:4487..5003+

>mRNA_L-elsbetiae_contig13491.2675.1 ID=mRNA_L-elsbetiae_contig13491.2675.1|Name=mRNA_L-elsbetiae_contig13491.2675.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig13491:4487..5003+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGCGGGCGAGCACACCCGGGAACCAAAAACACATCGAAAACCAAA
CGCGACAGCAGAAAAAACATCGCGACCCCAAGCCGAGGTCGCGGCCATTT
CCCCCCGCTCTCTTGGGGGATTGTTCGCCAGACATGTAACTCGCCCATCA
GACGTCGCCATTGATGTGTACATCGCCTCCCGGCAGGGCATTACTTCGGC
ACGTACCGTACCGCACGCGCTTTGTATTCGAATGCGAGTTCAACACAAAA
AAGCGGTGGGAGTAACGCTGTGCACACGTGGCAAGGAGCCCATCGAGAAC
TGGAAATAAATGATGGCGGGCGAGCACACCCGGGAACCAAAAACACATCG
AAAACCAAACGCGACAGCAGAAAAAACATCGCGACCCCAAGCCGAGGTCG
CGGCCATTTCCCCCCGCTCTCTTGGGGGATTGTTCGCCAGACATGTAACT
CGCCCATCAGACGTCGCCATTGATGTGTACATCGCCTCCCGGCAGGGCAT
TACTTCGGCACGTACCGTACCGCACGCGCTTTGTATTCGAATGCGAGTTC
AACACAAAAAAGCGGTGGGAGTAACGCTGTGCACACGTGGCAAGGAGCCC
ATCGAGAACTGGAAATAA
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