mRNA_L-elsbetiae_contig13486.2670.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13486.2670.1
Unique NamemRNA_L-elsbetiae_contig13486.2670.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13486.2670.1 vs. uniprot
Match: D7FS05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS05_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 4.640e-58
Identity = 131/168 (77.98%), Postives = 145/168 (86.31%), Query Frame = 1 
Query:    1 QVYGGYVAGIMGDEDNPQEERLDSVVEILSGATEEEAGLDDFRSSLKERWEIRVGLEEEEKEAAKAAKQREMDSKKXXXXXXVEXXXXXXXXXXXXXXXXSAEELAERARLLGEYGYDSDPVDEEGNPLPPEEGGADGEGGSSAADSLGEAYGKNLNKERVRQEIAAK 504
            +VYGGYV GIMGDEDNPQEER++SV+EILSGA EE+  L +FRS+L ERW+++V  EE+EKEAAKAAKQ+EMDSKKXXXXXX  XXXXXXXXXXXXXXXXSAEE AERARLLGEYGYDSDPVDEEGNPLPPEEGG DGEGGSSA           LNKERVR+E+AAK
Sbjct:   26 EVYGGYVTGIMGDEDNPQEERIESVIEILSGAAEEDNDLGEFRSALNERWDMKVEHEEKEKEAAKAAKQKEMDSKKXXXXXXXXXXXXXXXXXXXXXXXXSAEEQAERARLLGEYGYDSDPVDEEGNPLPPEEGG-DGEGGSSAXXXXXXXXXXXLNKERVREEVAAK 192
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BLAST of mRNA_L-elsbetiae_contig13486.2670.1 vs. uniprot
Match: A0A7S2WBQ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBQ4_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.180e-11
Identity = 60/169 (35.50%), Postives = 80/169 (47.34%), Query Frame = 1 
Query:    1 QVYGGYVAGIMGDEDNPQEERLDSVVEILSGATEEEAGLDD-FRSSLKERWEIRVGLEEEEKEAAKAAKQREMDSKKXXXXXXVEXXXXXXXXXXXXXXXXSAEELAERARLLGEYGYDSDPVDEEGNPLPPEEGGADGEGGSSAADSLGEAYGKNLNKERVRQEIAAK 504
            ++Y  YV GI+ DE    E R +SV++ILSGA EE   L+D F S L  +WE RV  +     +  A K        X       XXX             + EE  ER R+L +YG+ SD VDE+GN +      A     SSAA       G+N N+ RV++   AK
Sbjct:   31 EIYSEYVTGILADESEDMEARAESVIDILSGALEEGTELEDTFASDLAAQWEARVSQQTSTAASDAAEKXXXXXXXXXRDLALAAXXXEQKRLQLAKQNEMTREERKERNRILDQYGFASDVVDEDGNVI------ASASASSSAAQDDMSGIGQNTNRTRVKEAEQAK 193
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BLAST of mRNA_L-elsbetiae_contig13486.2670.1 vs. uniprot
Match: A0A485LI35_9STRA (Aste57867_21658 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI35_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 8.290e-6
Identity = 42/129 (32.56%), Postives = 68/129 (52.71%), Query Frame = 1 
Query:    1 QVYGGYVAGIMGDEDNPQEERLDSVVEILSGATEEEAGLDDFRSSLKERW-EIRVGLEEEEKEAAKAAKQREMDSKKXXXXXXVEXXXXXXXXXXXXXXXXSAEELAERARLLGEYGYDSDP-VDEEGN 381
            +VYG YV+GI+ D D+   +R  + V++L     +EA LD     L+++W E    LE+++ +  +A+K R + ++K      VE                S EELA+R ++L EYG   D  +DE+GN
Sbjct:   21 EVYGEYVSGIIADPDSDLADRCATAVDVLRAVAGDEAALDTMAGELEQKWIEQEKELEQKKIQELEASKLRLL-AEKEEELKLVEINKQKEAEKAQARLHMSKEELAQRDKILREYGSVGDSEMDEDGN 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13486.2670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS05_ECTSI4.640e-5877.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2WBQ4_9STRA1.180e-1135.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A485LI35_9STRA8.290e-632.56Aste57867_21658 protein n=1 Tax=Aphanomyces stella... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13486contigL-elsbetiae_contig13486:234..2984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue1.2e-42
Seed eggNOG ortholog2880.D7FS05
Hectar predicted targeting categoryother localisation
EggNOG OGs29Y8F@1,2RXTG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006970.1
Exons4
Model size504
Cds size474
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13486.2670.1prot_L-elsbetiae_contig13486.2670.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13486 234..2954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.6974485-CDS-L-elsbetiae_contig13486:233..3081622815518.6974485-CDS-L-elsbetiae_contig13486:233..308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13486 234..308 -
1691682937.3359468-CDS-L-elsbetiae_contig13486:233..3081691682937.3359468-CDS-L-elsbetiae_contig13486:233..308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13486 234..308 -
1622815518.708828-CDS-L-elsbetiae_contig13486:1056..12541622815518.708828-CDS-L-elsbetiae_contig13486:1056..1254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13486 1057..1254 -
1691682937.349077-CDS-L-elsbetiae_contig13486:1056..12541691682937.349077-CDS-L-elsbetiae_contig13486:1056..1254Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13486 1057..1254 -
1622815518.7188895-CDS-L-elsbetiae_contig13486:2310..24361622815518.7188895-CDS-L-elsbetiae_contig13486:2310..2436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13486 2311..2436 -
1691682937.3679106-CDS-L-elsbetiae_contig13486:2310..24361691682937.3679106-CDS-L-elsbetiae_contig13486:2310..2436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13486 2311..2436 -
1622815518.7305474-CDS-L-elsbetiae_contig13486:2879..29541622815518.7305474-CDS-L-elsbetiae_contig13486:2879..2954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13486 2880..2954 -
1691682937.381897-CDS-L-elsbetiae_contig13486:2879..29541691682937.381897-CDS-L-elsbetiae_contig13486:2879..2954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13486 2880..2954 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.7446601-UTR-L-elsbetiae_contig13486:2954..29841622815518.7446601-UTR-L-elsbetiae_contig13486:2954..2984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13486 2955..2984 -
1691682937.396249-UTR-L-elsbetiae_contig13486:2954..29841691682937.396249-UTR-L-elsbetiae_contig13486:2954..2984Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13486 2955..2984 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13486.2670.1

>prot_L-elsbetiae_contig13486.2670.1 ID=prot_L-elsbetiae_contig13486.2670.1|Name=mRNA_L-elsbetiae_contig13486.2670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MGDEDNPQEERLDSVVEILSGATEEEAGLDDFRSSLKERWEIRVGLEEEE
KEAAKAAKQREMDSKKEEERRQVEEADKERRAKADKKGERSAEELAERAR
LLGEYGYDSDPVDEEGNPLPPEEGGADGEGGSSAADSLGEAYGKNLNKER
VRQEIAAK
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mRNA from alignment at L-elsbetiae_contig13486:234..2984-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13486.2670.1 ID=mRNA_L-elsbetiae_contig13486.2670.1|Name=mRNA_L-elsbetiae_contig13486.2670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2751bp|location=Sequence derived from alignment at L-elsbetiae_contig13486:234..2984- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGTACGGGGGCTACGTGGCGGGTATCATGGGGGACGAGGACAACCC
GCAGGAGGAACGATTAGACTCCGTCGTCGAAATACTCTCCGGGGCTACAG
AGGAGGTGAGGTGCATCGATCACGTGTGTACGCGGGCGGCGCACGCTGGG
GCGTTTACGGTGCTGAGGGTGCAGTAAACAAGCACCCGAATGTAATGCTG
ACCCAGTTGGTGCCATCTATCTGCAGTAGGTTCACTTCCGCCAGTGCGCA
CGTACCTGACATTCTGACAAAATTTTAATTCTGACAAAATTCAATGTTGT
ATCTGCATGTGTGAAAGAGGGTCACACGTCTTCGACGGACTGCAGGAGGT
TTATATCTCTTGTATAAGGGTGACCTCCAAATGTACAGCCCCCTATTTCT
CTCCTTTGGCCATCCGTTGTTGTCGATCGACGTCACCCCCCCTGTCCCGG
GCTGTCTTTCCATCGACAGCAGCAGTTCCTGCATGTACTACGTACGGCCA
CAGTGATGTTTGCTCGTTTAACTTCATCGTTTTATTTTGTTTCCGCAGGA
GGCGGGCCTCGACGACTTCCGTTCCTCGCTGAAGGAGAGGTGGGAGATCA
GGGTAGGGCTAGAGGAGGAGGAGAAGGAGGCTGCTAAGGCTGCCAAGCAG
AGGGAGATGGATAGCAAGAAAGAGGTGTGTATGATACCATACATACACAC
ACCGAAACGTGTGGCAGGCGCCCGAATAAATGGGACGAACAAACACACAC
ACACACACACAAACACACAACACGTGTGCGTGAGCGAGTGAGCCAGCGCG
TTTTTTCGTGCGCGTGTGGCAAACGTAGAAGATGAAGTCTGACGTAATCT
GGTGTTTTTTGGAAGAACGGGGAGAACTAATTTGGACACAAAAAAGGGGG
GCCAGAAGAAGGGAAAGACAAGGGTACGTATGAAATGACGAATTTGAAAG
GCCCCTTGATCGAGAGAGGAAGACGCACTTGAAAAAGAAGAACGTGACAG
ACGTTGAAGATACCGGGTAGTAGAGCAAGACGAGAACAGCACCTAAGGAG
GAGGAGGCACAGAGTAAGGGGTAGTTGGGGAGCGTACTTTCTTGTTGGCA
AACACACGCTACTGCTGTTGTACACATGTACATGTGACACGCGGGACAAT
CCACTCAGCTATATAGTTATCTCACTTAGCACGTCGAGGGTTGGGATGTT
TGCCATCCAGCACCACCATCGTAGGTTGGTCCTCTTCGAAACCCACCAGA
ACAACAAGTCGTCCCGCCGCTATCTACTGCTGTCTACATTACATATCAAC
GCAAACCAGAATATCGTCCCGTTATCCCGCATCTACCCGCGATAAGTGTT
TCTCGCGTTGTACAACCAAACGGCAAACAAAACGTGGTCGCTTCTCCGTC
AATAGACTGGCAGCACGCGCGGTAGCGCTATTTAGCGCTGCGCTTGTTCT
CTCCTTCCTGAATATTTTTCGCGGTTACCTACATGTCGGGGGGCAAACTT
ATGACGAATAAAAAAACACGGAACGAGCTAATCAAACCTCTGTGTTTGCT
GCTCCTCGAACACGCACACACACACACACTGGGGTCATACATACCGCATC
TTCGATTGTCGGCAAGTTTCACCTGATGCCTGTCTCATAGCGACACAAAA
AAATTAAAATTAAAAACAACAACAACTGCTACTACTACTACTACTACTAC
TACTACTACTACTACTACTACTTTTTACAGGAGGAGCGACGGCAGGTGGA
GGAGGCGGACAAGGAGAGACGAGCGAAGGCCGACAAGAAGGGGGAGAGAT
CTGCCGAGGAGCTGGCCGAGCGGGCCAGGCTTCTCGGCGAGTACGGTTAC
GACTCGGACCCCGTAGACGAGGAGGGCAACCCTCTGCCTCCGGAGGAAGG
GGGAGCGGACGGGGAGGGGGGAAGCTCGGTGAGGTTTGATTCCTGGCTGC
TTGGGAGGCGGTGGCTATGTACCGTACCTACACGACACAAGATAACACAT
AACACACTCGCCCTGGACCGACTTTCAAAGCTCAAGCACCCCACAGCGAG
AAGAGTGTCGGTCCCGAAAAGGGTGGCGTTGGAGAGATCTCATCAAGAGC
TGTCCGACAAACGTGTCGTTTGGTATTGGTATCAACTCGTTGCGGAGTAA
CAGAGCTTTGAAAATCGAATCGGTCCAGGGGGGGGTGTAATCTTGTGTCA
TATCGTATACGGTGTGTAGATTGTTCCCGGGAGAATGGACGTTTAAGTGT
GTTGAGGTTGTTGTGTAGAGGGTGGCCGGTGGTCTTTGGCGCCACACATG
CACACACATACGTGCCAAACGTTGTGGTGGCGGTGGTATGTATGTATTGC
GAGAGTGTTTCGGCCTCTTGTGGTTTGTGTGAAAATTAATTTGAAGTTTT
GCAAGCGCAGCGGCGAGTACCCGCCCGGAAGACTTCCCGTCAAAAACCGT
CCTTGTGTCACGACGTCTGTGATAAGCGTCAGGCATTTTCCGGTGGCGAC
CGATTTGCGATCTGCTCTGTTCTGCTCTGCTCTGCTCTACCGGTACCCTG
TATTTTTGTTCATCTCCTCGATCTCGACCACCCGTTCTGCTCTGCTCTGC
TCTGCTCTGTTGTACCGGTACCCTGTACTTTATTTCATCTCCTCGATCTC
GACCACCCGCTCGCACCCTGTTGCAGGCCGCGGACAGCCTCGGGGAGGCT
TATGGCAAGAACCTTAACAAGGAACGAGTTAGACAGGAGATCGCCGCAAA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13486:234..2984-

>mRNA_L-elsbetiae_contig13486.2670.1 ID=mRNA_L-elsbetiae_contig13486.2670.1|Name=mRNA_L-elsbetiae_contig13486.2670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig13486:234..2984- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGACGAGGACAACCCGCAGGAGGAACGATTAGACTCCGTCGTCGA
AATACTCTCCGGGGCTACAGAGGAGATGGGGGACGAGGACAACCCGCAGG
AGGAACGATTAGACTCCGTCGTCGAAATACTCTCCGGGGCTACAGAGGAG
GAGGCGGGCCTCGACGACTTCCGTTCCTCGCTGAAGGAGAGGTGGGAGAT
CAGGGTAGGGCTAGAGGAGGAGGAGAAGGAGGCTGCTAAGGCTGCCAAGC
AGAGGGAGATGGATAGCAAGAAAGAGGAGGCGGGCCTCGACGACTTCCGT
TCCTCGCTGAAGGAGAGGTGGGAGATCAGGGTAGGGCTAGAGGAGGAGGA
GAAGGAGGCTGCTAAGGCTGCCAAGCAGAGGGAGATGGATAGCAAGAAAG
AGGAGGAGCGACGGCAGGTGGAGGAGGCGGACAAGGAGAGACGAGCGAAG
GCCGACAAGAAGGGGGAGAGATCTGCCGAGGAGCTGGCCGAGCGGGCCAG
GCTTCTCGGCGAGTACGGTTACGACTCGGACCCCGTAGACGAGGAGGGCA
ACCCTCTGCCTCCGGAGGAAGGGGGAGCGGACGGGGAGGGGGGAAGCTCG
GAGGAGCGACGGCAGGTGGAGGAGGCGGACAAGGAGAGACGAGCGAAGGC
CGACAAGAAGGGGGAGAGATCTGCCGAGGAGCTGGCCGAGCGGGCCAGGC
TTCTCGGCGAGTACGGTTACGACTCGGACCCCGTAGACGAGGAGGGCAAC
CCTCTGCCTCCGGAGGAAGGGGGAGCGGACGGGGAGGGGGGAAGCTCGGC
CGCGGACAGCCTCGGGGAGGCTTATGGCAAGAACCTTAACAAGGAACGAG
TTAGACAGGAGATCGCCGCAAAGGCCGCGGACAGCCTCGGGGAGGCTTAT
GGCAAGAACCTTAACAAGGAACGAGTTAGACAGGAGATCGCCGCAAAG
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