|
Homology
BLAST of mRNA_L-elsbetiae_contig1347.2665.1 vs. uniprot
Match: A0A6H5KZ79_9PHAE (PPM-type phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZ79_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 5.000e-15 Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 1
Query: 481 VAVSRIFANQGMKQPVKAVPDVSETSLCPECPFPILACAGLWDAFMDDDAVTYVAQAMETMTR 669
+AVSR F NQGMK V AVP VSETS+CP+C F ILAC G+WD F D+DAV++V QAME M
Sbjct: 211 LAVSRSFGNQGMKDLVTAVPHVSETSVCPDCTFLILACDGVWDVFTDNDAVSFVTQAMENMAE 273
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 1317 |
Cds size | 756 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815518.068258-UTR-L-elsbetiae_contig1347:7006..7469 | 1622815518.068258-UTR-L-elsbetiae_contig1347:7006..7469 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1347 7007..7469 - |
1691682937.0801728-UTR-L-elsbetiae_contig1347:7006..7469 | 1691682937.0801728-UTR-L-elsbetiae_contig1347:7006..7469 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1347 7007..7469 - |
1622815518.1677878-UTR-L-elsbetiae_contig1347:13016..13114 | 1622815518.1677878-UTR-L-elsbetiae_contig1347:13016..13114 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1347 13017..13114 - |
1691682937.139666-UTR-L-elsbetiae_contig1347:13016..13114 | 1691682937.139666-UTR-L-elsbetiae_contig1347:13016..13114 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1347 13017..13114 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815518.0805295-CDS-L-elsbetiae_contig1347:7469..7766 | 1622815518.0805295-CDS-L-elsbetiae_contig1347:7469..7766 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 7470..7766 - |
1691682937.0926316-CDS-L-elsbetiae_contig1347:7469..7766 | 1691682937.0926316-CDS-L-elsbetiae_contig1347:7469..7766 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 7470..7766 - |
1622815518.1223974-CDS-L-elsbetiae_contig1347:8334..8487 | 1622815518.1223974-CDS-L-elsbetiae_contig1347:8334..8487 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 8335..8487 - |
1691682937.1004858-CDS-L-elsbetiae_contig1347:8334..8487 | 1691682937.1004858-CDS-L-elsbetiae_contig1347:8334..8487 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 8335..8487 - |
1622815518.1363087-CDS-L-elsbetiae_contig1347:9309..9368 | 1622815518.1363087-CDS-L-elsbetiae_contig1347:9309..9368 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 9310..9368 - |
1691682937.1085293-CDS-L-elsbetiae_contig1347:9309..9368 | 1691682937.1085293-CDS-L-elsbetiae_contig1347:9309..9368 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 9310..9368 - |
1622815518.1462018-CDS-L-elsbetiae_contig1347:12647..12864 | 1622815518.1462018-CDS-L-elsbetiae_contig1347:12647..12864 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 12648..12864 - |
1691682937.1173997-CDS-L-elsbetiae_contig1347:12647..12864 | 1691682937.1173997-CDS-L-elsbetiae_contig1347:12647..12864 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 12648..12864 - |
1622815518.1560664-CDS-L-elsbetiae_contig1347:12986..13016 | 1622815518.1560664-CDS-L-elsbetiae_contig1347:12986..13016 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 12987..13016 - |
1691682937.126743-CDS-L-elsbetiae_contig1347:12986..13016 | 1691682937.126743-CDS-L-elsbetiae_contig1347:12986..13016 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1347 12987..13016 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1347.2665.1 >prot_L-elsbetiae_contig1347.2665.1 ID=prot_L-elsbetiae_contig1347.2665.1|Name=mRNA_L-elsbetiae_contig1347.2665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=252bp
MERTAHHAAYEGHSRVVGILLGRRSNVSIAAEDGITAAHLPAPCEPHPAV TGHLVKAGADSGRKSSLRRDTASSGCAGRQLGVAFQEKGRHGHDPGGQHR EQAEDASEQERGSAAGGFVLRNGVLGLRGGLENLRQPGDEAAREGRARRV RDKPMPGVPLPHPCVCRSVGCLYGRRCGDLCGAGDGDHDEMLLNFFCPQF LFSPSSFRRRFCFSQTRGGAKQLEICAASKRGILSPPPGGFVCVFLAQVY W* back to topmRNA from alignment at L-elsbetiae_contig1347:7007..13114- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1347.2665.1 ID=mRNA_L-elsbetiae_contig1347.2665.1|Name=mRNA_L-elsbetiae_contig1347.2665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6108bp|location=Sequence derived from alignment at L-elsbetiae_contig1347:7007..13114- (Laminarionema elsbetiae ELsaHSoW15) CTCTCTGTTGGTTACAGCTTACAGCCACACGTGTCAAAGTTCTCCGACGA
CCAGACGCCGCCGATAATTACTCCCACACAGAAGTGACCTCGGTGACGAT
GGAACGAACTGCGCACCATGCCGCATATGTGAGATATGTACAGCACGATG
TTTTCCTGAAAGCGTCGGAAGCTCTGCTCTCTACGGTCGATCATGATCGA
CCAAGGCGATTGATTCCCAAGGGCTGGACCCTCGTATCGTATGTTTGCAG
GAAGGCCACTCGCGCGTTGTCGGGATCCTGCTGGGCAGGAGATCCAACGT
GTCCATAGCGGCGGAGGACGGTATCACTGCTGCGCATCTTCCCGCTCCAT
GCGAACCTCACCCCGCCGTGACCGGGCACCTGGTGAAGGCCGGCGCAGAC
TCTGGACGCAAAAGCTCATTACGGCGCGACACCGCTTCATCTGGCTGCGC
AGGACGGCAACTCGGAGGTAATAATGACGACAGTACATGACTGAGGCCGG
CGCGGATGTAGACAACGTTCGGGGGATGGGCGTACACCGTTGGACAGGCG
GCATTATTTGATGGACGTTTTGGGTTTTGGACTCTGTGAAAGCCTTGTCT
CTCGCTACAATTGCCGATTCTTCTGTGCTTCTGAGGGTTTGTCTCTCTTT
GTGCAGCCTTTTGGTGCTGGAGGACCAAATGCTATTTCGGTGCGTCGTCG
TGCATTTGTGTAAATTTTTTCCGCCACACATGTCTGTGTACGTTTTGTCC
TCCTGCATAGCAGTGCTGCACGCCGTAGAACGAAACAAAATAGGCGCCAG
TTTTTTGTGCGGGGCACCCAACCTAGCCTCCGCGTGATTATCAACCGATG
ACGAGAGCGCGTCGCAGACAAACCGGTGGCTACGAAATTTGGCACGTAGA
CTAAATGAACCGTGAGGACCCTGGCACCCAAAGTGGCGCGTCGAAATACA
CTCAACGGCGGTCAGGAGGGACGATTTTCGCTTTAAAATCGCCTTCGCGC
ACAGGCATCATGCTTACCGAAGGTGACAGAAGATACCACACCCCCGGGAC
AGATTTTCAAAGCTCGATTCCTCCCCAGCAAAACTAGTGCCGGTGCCGAA
AGGGGGTGGCGTTGGAAAGATCTGGTTGAGGGCTGTCCGAAAATGTGTCG
TTTGGATCTGGCACCCTCTTCGATGGGGAGCAATGGAGCCTCTAAAAGCC
GGTCCAGGGTGTGTGGTATCTTGTGTCACCTACGGTAGATAGCCCTCGAC
AAACGGTTTAGGGTTTAAGAGAGTGCACTAGTAGGTATGCCCCAAAGAAG
GCGTTATGAGGTTTGTTCAGCAGTTCGAAATTTGCTGCAACACGCAGTTT
AGGCCGAGAATGCGCAATCGGTGCGAAGCAATATTTGACTTTACAGCATT
TTCTGCCGGCTCTTTTTTTTGTTTTGGTCCGAAGAGTACATACAAGATCC
GCGCAAATTCAAACATTGCTTTACGCCGATTGCGCGCTCTCGGCCTATAC
TGCGTGTTGCAGCAAAATTCAAACTGCTGAGCAACCCTCACAACGCCTTC
TTCGACATACCAGTGCACCCTTCCTAAACCGTTTGTAGGAAGCTACGCAT
TATGCCTGTGCGCGAAGACGACTTCTAAGAGAGAATCGTCCCTCCTGACT
GCCGCGCTGTGTGTATTTCGACGCGCTACTTTTGGTGCCAGGTCCTCACG
GTACATTTAGTTTACGTGCCAAATTTCGTAACCATCGGTTCTGTCTGCGA
CGCGCTCTCGGGCTCGGGTGAAATCCACGCGCCACTCAGCGAGAGGTTGC
GCCGCACCTCGCTTGCCGGCTATTTTGCGGCCTGTTGGGCATACAGTGAC
AGCTGCAGCGGCAGCTGTGCACTCTGTACGCTGTTGTAGGCGTATGTGGC
AGAGGCTTGGGTAGACAAACACAAAGAGTTAAATTATAAACACACACAGA
CGCCTAAGCTGTCTTCACCTGACGGTTACAGACTTAGATTACGCCGCACG
ACACTGTGTGGAACACACACAGTAGAAAAGAGTCGTTCTTGCACTACACA
AAAATATCCCAACACGGCCAAACTGCGAAAGTTTGTTTGGTCGGGGTCGA
GGGCAACAGGAGCATAAATCTGACAAATCAAGTGTCATTAGACAAGAAAT
ACAGACCTTTACAGCCGCAGTGCCTTAGATCGGTATATAGCGTCGTCGCT
GGACCGCACAGCAGCCGAAAGGGTGATTCTGAGGGGCGCCCCCTTAAAAC
CGGCGTGCAGCACTGATAGGAGAACTGTTGTTTTTTCGGGTCACAAGTAT
ATGTAATCTCCGGGTTATGTAGACAGCACCACCAGCAAGTCCCCTACCCG
CGTTCCAGGGGGCTCCGTGTCGCGTTTTCCCGCTTTTGTTCACGAGCGCC
GAAATGGCCCGCTTAGCCACCGGGCTGGGCAGTCACTTCGTAATGGCTCC
GGCTGTAGTTGCGATCCAAAATTTTTCCAGCCGTCCATGGAATCTGTGTC
CTTTACAGCCTGGCACCATCGTAAAAGGTTTCCGGGGCATGCTTCGGCTG
CCGACACGTCGATAAAGATTCAAATCGGGGAGACTTTCCGGGAAACAATC
AACATCATTGGAAGTATATTCATGGTGGTGATTTTCTCACCTACTGTGAA
GAGAGGTGGCTTTGGGTGTTCACTGGTGTGGCCGTCGGGCTTGGGATCCA
AAATTGCTCCAGCCTTGAAACGACTATACAGTGAACTCCTTTGACGGCCG
ACAGCCGGGTGGAGTTTGCTGCTGAGGAGCAAAAATTAAGCTTAGAAGCA
GCAGCAGACCGCGGCTTCTTTCAGTCGCGACCGCGCAGCGTTCCTCGAGT
TCAGGACGAAACGAAGGCATGCACACTACTTGCGGACGTCGAATAGGACA
TCTGTGAGACCCCCTGCAAGTTTTAGAGCAAGCTGCGACCTGTGCAAGGA
GTATGGTTGTGCTGAAAGGTGGTGACTCGGCTAAGCTCAGCGAAGAAAAT
AGGCCGGCGGCGGAAGATAAACTTTCCCGCCTGCGTGGACTCCGGTGACC
ATTTTTGTTGCACGGAGCCCCCTGCAACCTGGATCAAGGGGCCTCACGGA
ATGCAGGCTGGGACACCACAGCCCCCCCCCCCCAACCCACACCCAAAATG
TAGGCTTATCCATATTTGTTTAATATATAGGAATTAGTGTGGATGGCGTC
GTCAGGACCCACCGACCCTCGGATTTATTGGAAGAGGGGGGGTGGTAACA
AGCGTCATGCGTACGACCTTAACTAAGTCCTGTGTATAAGATCCCCCCCC
CCCCCCCCCCCCTCTCGTCCCTTTTTTTTCCCGCCCTGGCACGGTCTCTC
TCCCCCCCTCACAATAATTTNNNNNNNNNNCGTTTTTTTTGGAAGAGGGG
GGGGGGGAACACCCCGCCCCCTGGCTCCCGCCTCCTCACGGCTTGGTTTA
TGGACCCCCCCCCCCCCCCCCCCCTCTCGATTCTGGCCTTTTGCCTGCCG
TGCTGCAACAGTTCATCTGCCGCCAGTCAAATGTATTCGCTGCCTTCACC
GTCGCGGTTGCTATATAGTAGCGCGCGCGCACATGACGCTTCGTAAAAAA
CGTCGCCTGGTATTTCTGCCGCAGATAAAATTCTATCTATTTCCAGCACA
GATCCCTCTCCCAACGGATCCGTTCCTGCATGCGTATCTTATACATTCTT
CGGTGTTTCGCCTCGCCACTGCCATCGTCATCGCTGTCGCAACCAGTGGC
CTTTCAGGAGAAAGGCAGGCACGGCCACGATCCAGGAGGCCAACATCGGG
AGCAGGTGCGGGCATAATTTAGGACCGTTCTCAACGTGGTAACAAGAGAC
TCCCTTTGTTTTTTTTTTTGTCCTGCTCTCTTTTCTCTCAAGAAAACGGC
GCGCAAGCAGCTGGGATTGTTTGGCCAGGTGTTGCTGGGTGCTGTGGCTG
CCTCTACAACAGCAGTGTTACGTGACGCCCGCCCATCCTGCGTGTGTCTG
AGCGTGTGTGTGCTGATGGGGGGAAGGTTTCTTTGGAACCGGACCAAGTC
ACAATTCTCTCTTGCATTTCCGTTTTGTCGGCCCGTTGTTCCCACTTCGT
CCGGTATTTTGCGTTCAAGCCCACGTTTTAGTTGCCGGAGGGATTGCAGA
TTCTCCCCTAGATAGCCGACCAATTATTTGCATTGGTCCAAAGCACCGAG
AAACCGCCATCTCTCGGGCCCTGCACATCAAAGCCGCGGCCTACTTTACG
ACGACAGCCCCGTGAAAAAAATACTTGTTGTGAAGCTTTACAGCAGCTTC
CCGCGCACCCCACCTCGCCGCGTATAATGTCCGACACTCGTAGTCGTGCA
TCTTAGCCCGAGGAGGGGAGGCGGGGCGGCTGACCTACCGTAGGTGACAT
AAGATAAGACACCCCCTGGACCGATTTTGAAAGCTTCGTTACTCCGCAAC
GAATACGAGTCTAATCACAAACGCCACATTTTCGGACAGCTCTCAACGAG
ATCTTTCCAACGCCGCCCTTTTCGGTACTGACGACCTGCTTGCTGTGGAG
TACTCGAGCTTTGAAAATCGGTCCAGGGGGTGTCTTATCTTATGTCACTC
ACCTACGGTACTGATCTACAACCAAAGGCGGAGGACGCCTCGGAGCAGGA
GAGAGGCAGCGCGGCCGGTGGGTTCGTTCTGCGGAATGGTGTCCTCGGCC
TTCGTGGCGGTCTCGAGAATCTTCGCCAACCAGGGGATGAAGCAGCCCGT
GAAGGCCGTGCCCGACGTGTCCGAGACAAGGTACCGTATGTGACAGAAAG
ATAAGACACCCCCTGGACCGAGATTGAAAGCTTGGTTACTCCGCGACGAA
TACGATTCTAACCACAAACGCCACATTTTCGGACAGCTCTCGACGAGATC
TTTCCAACGCCGCCCCTTTCGGGACTGACGCTCTGCTTGCTGTGGAGTAC
TTGAGCTCTGAAAATCGGTCCAGGGGGTGTCTTATCTTATGTCACCTACG
GTAACTTGTGCACCGTCGAGTTGTTTGGGGCTGGCGTGATCGTGTTTTTT
TTTCCCGACCAGGGGTGGGGTGCAATATCAGGTGTACTCCAAATGACCAC
TTTACTCGCCCTGGTTCTGGGTTTCGCGTAGATTTGTTTTTCGCGGTGGT
CTCGCGCGCAAGTGCCTCACGATTTGCCGCAGGATTGTGAGTCACGGCAG
CGAGCGCGATATCACGCTCAATTTTCGTCGTTGATGTTGTCCCCCCCCCA
CTCTTGATTCTATCTCTGCTACTTCCTTTTACCTCCTCCCCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCCCGCTCCCTCCATCTTCCCAGCC
TATGCCCGGAGTGCCCCTTCCCCATCCTTGCGTGTGCCGGTCTGTGGGAT
GCCTTTATGGACGACGATGCGGTGACCTATGTGGCGCAGGCGATGGAGAC
CATGACGAGATGCTACTGAACTTTTTCTGTCCTCAATTCCTTTTCTCGCC
TAGTAGTTTTCGGCGCCGTTTTTGTTTTTCGCAGACCAGAGGCGGCGCAA
AACAGTTGGAGATATGCGCTGCTTCGAAAAGGGGCATTTTGTCTCCGCCG
CCGGGTGGTTTTGTGTGCGTTTTTCTGGCTCAGGTTTATTGGTGACGGTT
AGTACCACTCTTGTCACTTCTTTTCCCCTACCGCCCGCACTGCCTTGGTC
GTGTTCTTTGCCGTGGCGTTCTCTGCGGAGCAAGCGCTGAAGAGAAGAGC
ATGGCAACACTTCAAGAGTCCCCTTTTGCTGCTCCTAAGTAGATCGATTT
CCCGTTCAGCGCGTTGAATGTTATCCTCGCTCTCGTTGCCCTATTGTAGC
CCTCCGATTTTTTTTTTTTTATTTGGGTGTTTTTTGTGCTTAATATGTTT
ACCTAAGTTTCGTGTTTCCGCAACACAGGCTCTCTCTTTGCAAGGGCTCT
CGGATAGGGAGAGGTATGCGAGATGACGCACTGCTTGTAGTACACTGTCT
GTTGGCGGCACCCCATAAAGGGAGTAAATAACGCGCGCGGAGGCAACCAC
AACGAGGAACCCTTCGCAGAGGTTTTCAGCAACGTGCGAAATGCACACAA
GACGGGCG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1347:7007..13114- >mRNA_L-elsbetiae_contig1347.2665.1 ID=mRNA_L-elsbetiae_contig1347.2665.1|Name=mRNA_L-elsbetiae_contig1347.2665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1512bp|location=Sequence derived from alignment at L-elsbetiae_contig1347:7007..13114- (Laminarionema elsbetiae ELsaHSoW15) ATGGAACGAACTGCGCACCATGCCGCATATATGGAACGAACTGCGCACCA TGCCGCATATGAAGGCCACTCGCGCGTTGTCGGGATCCTGCTGGGCAGGA GATCCAACGTGTCCATAGCGGCGGAGGACGGTATCACTGCTGCGCATCTT CCCGCTCCATGCGAACCTCACCCCGCCGTGACCGGGCACCTGGTGAAGGC CGGCGCAGACTCTGGACGCAAAAGCTCATTACGGCGCGACACCGCTTCAT CTGGCTGCGCAGGACGGCAACTCGGAGGAAGGCCACTCGCGCGTTGTCGG GATCCTGCTGGGCAGGAGATCCAACGTGTCCATAGCGGCGGAGGACGGTA TCACTGCTGCGCATCTTCCCGCTCCATGCGAACCTCACCCCGCCGTGACC GGGCACCTGGTGAAGGCCGGCGCAGACTCTGGACGCAAAAGCTCATTACG GCGCGACACCGCTTCATCTGGCTGCGCAGGACGGCAACTCGGAGTGGCCT TTCAGGAGAAAGGCAGGCACGGCCACGATCCAGGAGGCCAACATCGGGAG CAGTGGCCTTTCAGGAGAAAGGCAGGCACGGCCACGATCCAGGAGGCCAA CATCGGGAGCAGGCGGAGGACGCCTCGGAGCAGGAGAGAGGCAGCGCGGC CGGTGGGTTCGTTCTGCGGAATGGTGTCCTCGGCCTTCGTGGCGGTCTCG AGAATCTTCGCCAACCAGGGGATGAAGCAGCCCGTGAAGGCCGTGCCCGA CGTGTCCGAGACAAGGCGGAGGACGCCTCGGAGCAGGAGAGAGGCAGCGC GGCCGGTGGGTTCGTTCTGCGGAATGGTGTCCTCGGCCTTCGTGGCGGTC TCGAGAATCTTCGCCAACCAGGGGATGAAGCAGCCCGTGAAGGCCGTGCC CGACGTGTCCGAGACAAGCCTATGCCCGGAGTGCCCCTTCCCCATCCTTG CGTGTGCCGGTCTGTGGGATGCCTTTATGGACGACGATGCGGTGACCTAT GTGGCGCAGGCGATGGAGACCATGACGAGATGCTACTGAACTTTTTCTGT CCTCAATTCCTTTTCTCGCCTAGTAGTTTTCGGCGCCGTTTTTGTTTTTC GCAGACCAGAGGCGGCGCAAAACAGTTGGAGATATGCGCTGCTTCGAAAA GGGGCATTTTGTCTCCGCCGCCGGGTGGTTTTGTGTGCGTTTTTCTGGCT CAGGTTTATTGGTGACCTATGCCCGGAGTGCCCCTTCCCCATCCTTGCGT GTGCCGGTCTGTGGGATGCCTTTATGGACGACGATGCGGTGACCTATGTG GCGCAGGCGATGGAGACCATGACGAGATGCTACTGAACTTTTTCTGTCCT CAATTCCTTTTCTCGCCTAGTAGTTTTCGGCGCCGTTTTTGTTTTTCGCA GACCAGAGGCGGCGCAAAACAGTTGGAGATATGCGCTGCTTCGAAAAGGG GCATTTTGTCTCCGCCGCCGGGTGGTTTTGTGTGCGTTTTTCTGGCTCAG GTTTATTGGTGA back to top
|