mRNA_L-elsbetiae_contig13469.2662.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13469.2662.1
Unique NamemRNA_L-elsbetiae_contig13469.2662.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig13469.2662.1 vs. uniprot
Match: A0A6H5KXH0_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXH0_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.200e-15
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VKGVRLLDITFLRATGESSARGYPWHEALAWWQSGVRRHMLE 126
            VKGV+LLD+ FLRATGESSA GYPWHEALA+W+SGVRRH+L+
Sbjct:  158 VKGVQLLDLAFLRATGESSAEGYPWHEALAFWKSGVRRHILD 199
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BLAST of mRNA_L-elsbetiae_contig13469.2662.1 vs. uniprot
Match: D7G9B3_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B3_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.640e-15
Identity = 33/42 (78.57%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 VKGVRLLDITFLRATGESSARGYPWHEALAWWQSGVRRHMLE 126
            +KGV+LLD+ FLRATGESSA GYPWHEALA+W+SGVRRH+L+
Sbjct:  141 IKGVQLLDLAFLRATGESSAEGYPWHEALAFWKSGVRRHILD 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13469.2662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXH0_9PHAE1.200e-1580.95Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7G9B3_ECTSI1.640e-1578.57Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13469contigL-elsbetiae_contig13469:4819..4944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-03_004350.1
Exons1
Model size126
Cds size126
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.9407012-CDS-L-elsbetiae_contig13469:4818..49441622815517.9407012-CDS-L-elsbetiae_contig13469:4818..4944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13469 4819..4944 +
1691682937.0356452-CDS-L-elsbetiae_contig13469:4818..49441691682937.0356452-CDS-L-elsbetiae_contig13469:4818..4944Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13469 4819..4944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13469.2662.1prot_L-elsbetiae_contig13469.2662.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13469 4819..4944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13469.2662.1

>prot_L-elsbetiae_contig13469.2662.1 ID=prot_L-elsbetiae_contig13469.2662.1|Name=mRNA_L-elsbetiae_contig13469.2662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=42bp
VKGVRLLDITFLRATGESSARGYPWHEALAWWQSGVRRHMLE
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mRNA from alignment at L-elsbetiae_contig13469:4819..4944+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13469.2662.1 ID=mRNA_L-elsbetiae_contig13469.2662.1|Name=mRNA_L-elsbetiae_contig13469.2662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=126bp|location=Sequence derived from alignment at L-elsbetiae_contig13469:4819..4944+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAAAGGCGTGCGGCTGCTGGACATCACCTTCCTGCGGGCCACAGGAGA
GAGCAGCGCCAGGGGGTATCCCTGGCACGAGGCCTTGGCGTGGTGGCAGA
GCGGGGTCAGGCGCCACATGCTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13469:4819..4944+

>mRNA_L-elsbetiae_contig13469.2662.1 ID=mRNA_L-elsbetiae_contig13469.2662.1|Name=mRNA_L-elsbetiae_contig13469.2662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig13469:4819..4944+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAAAGGCGTGCGGCTGCTGGACATCACCTTCCTGCGGGCCACAGGAGA
GAGCAGCGCCAGGGGGTATCCCTGGCACGAGGCCTTGGCGTGGTGGCAGA
GCGGGGTCAGGCGCCACATGCTCGAGGTGAAAGGCGTGCGGCTGCTGGAC
ATCACCTTCCTGCGGGCCACAGGAGAGAGCAGCGCCAGGGGGTATCCCTG
GCACGAGGCCTTGGCGTGGTGGCAGAGCGGGGTCAGGCGCCACATGCTCG
AG
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