mRNA_L-elsbetiae_contig13463.2659.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13463.2659.1
Unique NamemRNA_L-elsbetiae_contig13463.2659.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13463.2659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13463contigL-elsbetiae_contig13463:3997..4596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size402
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.7648594-UTR-L-elsbetiae_contig13463:3996..41941622815517.7648594-UTR-L-elsbetiae_contig13463:3996..4194Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13463 3997..4194 +
1691682936.9534857-UTR-L-elsbetiae_contig13463:3996..41941691682936.9534857-UTR-L-elsbetiae_contig13463:3996..4194Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13463 3997..4194 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.778378-CDS-L-elsbetiae_contig13463:4194..45961622815517.778378-CDS-L-elsbetiae_contig13463:4194..4596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13463 4195..4596 +
1691682936.9647784-CDS-L-elsbetiae_contig13463:4194..45961691682936.9647784-CDS-L-elsbetiae_contig13463:4194..4596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13463 4195..4596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13463.2659.1prot_L-elsbetiae_contig13463.2659.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13463 4195..4596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13463.2659.1

>prot_L-elsbetiae_contig13463.2659.1 ID=prot_L-elsbetiae_contig13463.2659.1|Name=mRNA_L-elsbetiae_contig13463.2659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
MILDLGISDDVSAQLLARLQEDRDKTASDVRGQERLATAVAAAAAVSSTA
LTEAPNPSPAIAGDSTATQEGRQRPSPRGSPDTDTVLQQLVEALSNNNRN
TQSDMYHVTADSSPRLDFKGNSAIGNNENAMLYM
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mRNA from alignment at L-elsbetiae_contig13463:3997..4596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13463.2659.1 ID=mRNA_L-elsbetiae_contig13463.2659.1|Name=mRNA_L-elsbetiae_contig13463.2659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig13463:3997..4596+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCCTGAGATCCTCCTCCCCCTTACCCCTCGGGCGCTCCTCACGGGAGC
GCACCGGGAGAATAATACAAGCGATCTACTGGTTCCATATCTTCTTCCAC
CTCAAACCACCCCCCTCCCGAACACGCTAGCAAGTTATAACTCGGGACAA
CGGGCGCGGTTATCTCGCACGCCACATCATGGCTAAGCCACTTAAGAAAT
GATCTTGGACTTGGGGATCTCGGACGACGTGAGTGCTCAACTCCTCGCCC
GCCTCCAAGAAGACAGAGACAAGACCGCCTCGGACGTCCGGGGACAGGAG
CGCTTAGCCACCGCCGTCGCCGCCGCCGCGGCGGTATCATCGACCGCTCT
CACCGAAGCGCCAAACCCATCGCCAGCAATCGCTGGAGACTCCACAGCCA
CCCAAGAGGGACGACAGCGCCCAAGCCCCCGCGGATCCCCAGACACGGAC
ACTGTGCTGCAGCAGCTAGTCGAAGCACTCAGCAACAACAACCGGAACAC
CCAGTCAGACATGTACCATGTCACGGCGGACAGCTCCCCGAGGCTAGATT
TCAAAGGCAATAGCGCCATCGGCAACAACGAGAACGCCATGCTTTATATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13463:3997..4596+

>mRNA_L-elsbetiae_contig13463.2659.1 ID=mRNA_L-elsbetiae_contig13463.2659.1|Name=mRNA_L-elsbetiae_contig13463.2659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig13463:3997..4596+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCTTGGACTTGGGGATCTCGGACGACGTGAGTGCTCAACTCCTCGC
CCGCCTCCAAGAAGACAGAGACAAGACCGCCTCGGACGTCCGGGGACAGG
AGCGCTTAGCCACCGCCGTCGCCGCCGCCGCGGCGGTATCATCGACCGCT
CTCACCGAAGCGCCAAACCCATCGCCAGCAATCGCTGGAGACTCCACAGC
CACCCAAGAGGGACGACAGCGCCCAAGCCCCCGCGGATCCCCAGACACGG
ACACTGTGCTGCAGCAGCTAGTCGAAGCACTCAGCAACAACAACCGGAAC
ACCCAGTCAGACATGTACCATGTCACGGCGGACAGCTCCCCGAGGCTAGA
TTTCAAAGGCAATAGCGCCATCGGCAACAACGAGAACGCCATGCTTTATA
TGATGATCTTGGACTTGGGGATCTCGGACGACGTGAGTGCTCAACTCCTC
GCCCGCCTCCAAGAAGACAGAGACAAGACCGCCTCGGACGTCCGGGGACA
GGAGCGCTTAGCCACCGCCGTCGCCGCCGCCGCGGCGGTATCATCGACCG
CTCTCACCGAAGCGCCAAACCCATCGCCAGCAATCGCTGGAGACTCCACA
GCCACCCAAGAGGGACGACAGCGCCCAAGCCCCCGCGGATCCCCAGACAC
GGACACTGTGCTGCAGCAGCTAGTCGAAGCACTCAGCAACAACAACCGGA
ACACCCAGTCAGACATGTACCATGTCACGGCGGACAGCTCCCCGAGGCTA
GATTTCAAAGGCAATAGCGCCATCGGCAACAACGAGAACGCCATGCTTTA
TATG
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