mRNA_L-elsbetiae_contig1345.2652.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1345.2652.1
Unique NamemRNA_L-elsbetiae_contig1345.2652.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1345.2652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1345contigL-elsbetiae_contig1345:10558..10993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size436
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.0313067-UTR-L-elsbetiae_contig1345:10557..106301622815517.0313067-UTR-L-elsbetiae_contig1345:10557..10630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1345 10558..10630 +
1691682936.4861946-UTR-L-elsbetiae_contig1345:10557..106301691682936.4861946-UTR-L-elsbetiae_contig1345:10557..10630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1345 10558..10630 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.0421457-CDS-L-elsbetiae_contig1345:10630..109931622815517.0421457-CDS-L-elsbetiae_contig1345:10630..10993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1345 10631..10993 +
1691682936.4967344-CDS-L-elsbetiae_contig1345:10630..109931691682936.4967344-CDS-L-elsbetiae_contig1345:10630..10993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1345 10631..10993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1345.2652.1prot_L-elsbetiae_contig1345.2652.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1345 10631..10993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1345.2652.1

>prot_L-elsbetiae_contig1345.2652.1 ID=prot_L-elsbetiae_contig1345.2652.1|Name=mRNA_L-elsbetiae_contig1345.2652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MPTSRRGCIPTTDRQTAVAPPVYSSVVMVRDTRSKHTAVVPAPPRQLSTP
LPPFSTIIPPRRQHTVRSSIKTRGKRAQPPAEAVRARVRTQAHTHVAYLS
APPARASTHLSSPLAAQAIQS
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mRNA from alignment at L-elsbetiae_contig1345:10558..10993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1345.2652.1 ID=mRNA_L-elsbetiae_contig1345.2652.1|Name=mRNA_L-elsbetiae_contig1345.2652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=436bp|location=Sequence derived from alignment at L-elsbetiae_contig1345:10558..10993+ (Laminarionema elsbetiae ELsaHSoW15)
GTCCATTTAAAAGTAGCCCAGTCGATTTCTCGGACAGTCGCAATGATTTT
TTGGTCAAGGAAGGACTGCTGACATGCCCACCTCACGTCGAGGCTGCATC
CCAACCACCGACAGACAGACAGCCGTCGCCCCGCCCGTCTACAGCAGTGT
TGTCATGGTACGCGACACGAGGAGCAAGCACACAGCAGTAGTGCCAGCCC
CGCCCCGTCAACTCAGCACCCCCCTCCCTCCGTTTTCCACAATAATACCT
CCTCGTCGGCAACACACCGTCCGTTCGAGTATCAAAACTCGGGGGAAGAG
AGCACAACCACCTGCTGAGGCGGTGCGCGCGCGCGTGAGGACGCAAGCAC
ATACGCATGTCGCTTACCTGAGCGCCCCCCCCGCTCGCGCTTCGACACAT
CTCTCCTCTCCTCTTGCCGCGCAGGCCATACAATCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1345:10558..10993+

>mRNA_L-elsbetiae_contig1345.2652.1 ID=mRNA_L-elsbetiae_contig1345.2652.1|Name=mRNA_L-elsbetiae_contig1345.2652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig1345:10558..10993+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCCACCTCACGTCGAGGCTGCATCCCAACCACCGACAGACAGACAGC
CGTCGCCCCGCCCGTCTACAGCAGTGTTGTCATGGTACGCGACACGAGGA
GCAAGCACACAGCAGTAGTGCCAGCCCCGCCCCGTCAACTCAGCACCCCC
CTCCCTCCGTTTTCCACAATAATACCTCCTCGTCGGCAACACACCGTCCG
TTCGAGTATCAAAACTCGGGGGAAGAGAGCACAACCACCTGCTGAGGCGG
TGCGCGCGCGCGTGAGGACGCAAGCACATACGCATGTCGCTTACCTGAGC
GCCCCCCCCGCTCGCGCTTCGACACATCTCTCCTCTCCTCTTGCCGCGCA
GGCCATACAATCCATGCCCACCTCACGTCGAGGCTGCATCCCAACCACCG
ACAGACAGACAGCCGTCGCCCCGCCCGTCTACAGCAGTGTTGTCATGGTA
CGCGACACGAGGAGCAAGCACACAGCAGTAGTGCCAGCCCCGCCCCGTCA
ACTCAGCACCCCCCTCCCTCCGTTTTCCACAATAATACCTCCTCGTCGGC
AACACACCGTCCGTTCGAGTATCAAAACTCGGGGGAAGAGAGCACAACCA
CCTGCTGAGGCGGTGCGCGCGCGCGTGAGGACGCAAGCACATACGCATGT
CGCTTACCTGAGCGCCCCCCCCGCTCGCGCTTCGACACATCTCTCCTCTC
CTCTTGCCGCGCAGGCCATACAATCC
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