mRNA_L-elsbetiae_contig13437.2646.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13437.2646.1
Unique NamemRNA_L-elsbetiae_contig13437.2646.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: A0A6H5JLP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP7_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 5.860e-47
Identity = 80/86 (93.02%), Postives = 81/86 (94.19%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKALLGASWGHRRG 259
            GTLSIMVGG+EEHL TC PV EAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGL DTAKLKALL ASWGHRRG
Sbjct:  151 GTLSIMVGGKEEHLKTCLPVLEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLGDTAKLKALLEASWGHRRG 236          
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: D8LJL1_ECTSI (6-phosphogluconate dehydrogenase NAD-binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJL1_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.530e-41
Identity = 74/83 (89.16%), Postives = 75/83 (90.36%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKALLGASWGH 250
            GTLSIMVGG+ EHL TC PV EAMGSRIEHMGGYGAGAAAKLVNQHLVI NTVAACEAYVLARRLGL D  KLKALLGASWGH
Sbjct:  151 GTLSIMVGGKGEHLKTCLPVLEAMGSRIEHMGGYGAGAAAKLVNQHLVIINTVAACEAYVLARRLGLSDMGKLKALLGASWGH 233          
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: A0A356FFG8_9BACT (2-hydroxy-3-oxopropionate reductase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356FFG8_9BACT)

HSP 1 Score: 83.6 bits (205), Expect = 2.350e-17
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKALLGASWGHRR 256
            GTL+IM GG  +     RPVF+AMGS++ HMG  GAG AAKL NQ +V  N++A CEA  +AR++G D   KL+ LL  +WG  R
Sbjct:  128 GTLAIMAGGEPDIFERARPVFDAMGSKVVHMGPAGAGTAAKLANQLMVGVNSLACCEALTMARQVGAD-LEKLQDLLANAWGQSR 211          
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: A0A2D8MY99_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D8MY99_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 4.570e-17
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKALLGASWGHRR 256
            GTL+IM GG  E     RPVFEAMGS++ HMG  GAG A KL NQ LV  N++A CEA  +AR +G+D   +L+ +L ++WG  R
Sbjct:  128 GTLAIMAGGDREVFERARPVFEAMGSKVVHMGPAGAGTATKLANQLLVGVNSLACCEALTMARGVGVD-LEQLQDVLASAWGQSR 211          
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: A0A7S2FGP3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGP3_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.770e-15
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKALLGA---SWGH 250
            GTL+IMVGG +E       V + +GSR  H+GG GAGAAAKLVNQ L  +N +AA EA  LAR +G+D    L+ LL     SWG+
Sbjct:   62 GTLTIMVGGGKETFEASCEVMDTLGSRSVHLGGPGAGAAAKLVNQLLTASNALAASEALALARAMGIDSQDSLRTLLSTLETSWGN 147          
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: A0A7S2FHY7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHY7_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.730e-15
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKALLGA---SWGH 250
            GTL+IMVGG +E       V + +GSR  H+GG GAGAAAKLVNQ L  +N +AA EA  LAR +G+D    L+ LL     SWG+
Sbjct:  145 GTLTIMVGGGKETFEASCEVMDTLGSRSVHLGGPGAGAAAKLVNQLLTASNALAASEALALARAMGIDSQDSLRTLLSTLETSWGN 230          
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: A0A1F4QHN0_9BACT (Uncharacterized protein n=1 Tax=candidate division NC10 bacterium RBG_16_65_8 TaxID=1801657 RepID=A0A1F4QHN0_9BACT)

HSP 1 Score: 76.6 bits (187), Expect = 1.120e-14
Identity = 43/82 (52.44%), Postives = 52/82 (63.41%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKALLGASWG 247
            GTL+IMVGGR   L   RPV +A+G +I H GG GAG  AKLVNQ LV  +TVAA EA +  R+ GLD    +  L  +S G
Sbjct:  132 GTLTIMVGGRAADLEAVRPVLQAIGKKIVHCGGPGAGQGAKLVNQALVAVHTVAAFEALLAGRKFGLDLDTMVSILRSSSGG 213          
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: A0A0N0RFA6_9CHLR (2-hydroxy-3-oxopropionate reductase n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0N0RFA6_9CHLR)

HSP 1 Score: 76.3 bits (186), Expect = 1.500e-14
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKAL 229
            GTLSIMVGG  E +    PVF+AMG +I H+GG+GAG   KLVNQ LV+ N +A  EA V A+  GLD    L+A+
Sbjct:  132 GTLSIMVGGEAEQVARAMPVFQAMGKKITHVGGHGAGQMVKLVNQILVVINMLAVSEALVFAQAGGLDLEKTLEAV 207          
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: A0A7V3L3E9_9BACT (NAD(P)-dependent oxidoreductase n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V3L3E9_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 1.890e-14
Identity = 42/84 (50.00%), Postives = 50/84 (59.52%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKALLG---ASW 244
            GTLSIMVGG  E LN  RP+ + +GSRI HMGG+GAG  AKL NQ +   N +A CE        GLD    L A+ G   +SW
Sbjct:  133 GTLSIMVGGSAETLNEVRPILQCLGSRITHMGGFGAGQTAKLCNQIICGLNILACCEGLAFGAVAGLDLNVLLDAIQGGAASSW 216          
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Match: A0A424KD84_9BACT (NAD(P)-dependent oxidoreductase n=1 Tax=Phycisphaera sp. TMED9 TaxID=1986611 RepID=A0A424KD84_9BACT)

HSP 1 Score: 75.5 bits (184), Expect = 2.970e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 2
Query:    2 GTLSIMVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAACEAYVLARRLGLDDTAKLKAL 229
            GTLSIM+GG  + + + RP+FEA G  I H GG GAG   K+VNQ LV  + + ACEA + A R GLD    LK++
Sbjct:  147 GTLSIMIGGDSDAVESARPIFEACGGTIVHQGGPGAGQKTKIVNQILVAASMIGACEAILFAARAGLDARTVLKSV 222          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13437.2646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLP7_9PHAE5.860e-4793.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJL1_ECTSI1.530e-4189.166-phosphogluconate dehydrogenase NAD-binding n=1 T... [more]
A0A356FFG8_9BACT2.350e-1751.762-hydroxy-3-oxopropionate reductase n=1 Tax=Planct... [more]
A0A2D8MY99_9BACT4.570e-1751.76Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7S2FGP3_9STRA1.770e-1551.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2FHY7_9STRA4.730e-1551.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1F4QHN0_9BACT1.120e-1452.44Uncharacterized protein n=1 Tax=candidate division... [more]
A0A0N0RFA6_9CHLR1.500e-1453.952-hydroxy-3-oxopropionate reductase n=2 Tax=Ardent... [more]
A0A7V3L3E9_9BACT1.890e-1450.00NAD(P)-dependent oxidoreductase n=1 Tax=Armatimona... [more]
A0A424KD84_9BACT2.970e-1450.00NAD(P)-dependent oxidoreductase n=1 Tax=Phycisphae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13437contigL-elsbetiae_contig13437:1060..1599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue2.6e-31
Seed eggNOG ortholog2880.D8LJL1
KEGG rclassRC00099
KEGG koko:K00020
KEGG ReactionR05066
KEGG Pathwayko00280,ko01100,map00280,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3hydroxyisobutyrate dehydrogenase
EggNOG OGsCOG2084@1,KOG0409@2759
EC1.1.1.31
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size271
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13437.2646.1prot_L-elsbetiae_contig13437.2646.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13437 1060..1583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.6038918-CDS-L-elsbetiae_contig13437:1059..11941622815514.6038918-CDS-L-elsbetiae_contig13437:1059..1194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13437 1060..1194 -
1691682936.0580072-CDS-L-elsbetiae_contig13437:1059..11941691682936.0580072-CDS-L-elsbetiae_contig13437:1059..1194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13437 1060..1194 -
1622815514.617389-CDS-L-elsbetiae_contig13437:1463..15831622815514.617389-CDS-L-elsbetiae_contig13437:1463..1583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13437 1464..1583 -
1691682936.0707688-CDS-L-elsbetiae_contig13437:1463..15831691682936.0707688-CDS-L-elsbetiae_contig13437:1463..1583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13437 1464..1583 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.6339388-UTR-L-elsbetiae_contig13437:1583..15991622815514.6339388-UTR-L-elsbetiae_contig13437:1583..1599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13437 1584..1599 -
1691682936.0783954-UTR-L-elsbetiae_contig13437:1583..15991691682936.0783954-UTR-L-elsbetiae_contig13437:1583..1599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig13437 1584..1599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13437.2646.1

>prot_L-elsbetiae_contig13437.2646.1 ID=prot_L-elsbetiae_contig13437.2646.1|Name=mRNA_L-elsbetiae_contig13437.2646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MVGGREEHLNTCRPVFEAMGSRIEHMGGYGAGAAAKLVNQHLVITNTVAA
CEAYVLARRLGLDDTAKLKALLGASWGHRRGGQG*
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mRNA from alignment at L-elsbetiae_contig13437:1060..1599-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13437.2646.1 ID=mRNA_L-elsbetiae_contig13437.2646.1|Name=mRNA_L-elsbetiae_contig13437.2646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig13437:1060..1599- (Laminarionema elsbetiae ELsaHSoW15)
AGGGACGCTGTCCATCATGGTCGGCGGTAGAGAGGAACACCTCAACACTT GCCGGCCCGTGTTCGAAGCCATGGGCAGCCGCATCGAGCACATGGGGGGT TACGGGGCTGGGGCGGCCGCCAAGCTTGTCAACCAGGTACTTATTTTTGA TAAAATGTGTTGGCGGCAAAGCTTGTTGGAAGCTCGTCTACCTACCGGTG GTGGCCTCCGACCTCCGGCAATTATTTCATGTACATGCGAGTGGTGGGGG TGTTTTGGCGCGGCCGGGGGGGGGGGCCGGCGGCCACGTCTTTCTGCACA CACTTGCTCCGTTTTTTTTTTTTTTTTATCCCGTCTTTCTTTCTCTCCTC TCGCGCTGTTTTTTATTTATTTATTTTTTCCCCCCCTATTTTTTTTTTCC CCCAGCACCTTGTCATCACCAACACGGTGGCGGCGTGCGAGGCGTACGTC CTCGCGAGGCGCTTGGGGCTAGATGACACAGCCAAGCTCAAGGCCCTCCT TGGAGCGTCATGGGGGCACAGGCGAGGCGGGCAAGGATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig13437:1060..1599-

>mRNA_L-elsbetiae_contig13437.2646.1 ID=mRNA_L-elsbetiae_contig13437.2646.1|Name=mRNA_L-elsbetiae_contig13437.2646.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig13437:1060..1599- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTCGGCGGTAGAGAGGAACACCTCAACACTTGCCGGCCCGTGTTCGA
AGCCATGGGCAGCCGCATCGAGCACATGGGGGGTTACGGGGCTGGGGCGG
CCGCCAAGCTTGTCAACCAGATGGTCGGCGGTAGAGAGGAACACCTCAAC
ACTTGCCGGCCCGTGTTCGAAGCCATGGGCAGCCGCATCGAGCACATGGG
GGGTTACGGGGCTGGGGCGGCCGCCAAGCTTGTCAACCAGCACCTTGTCA
TCACCAACACGGTGGCGGCGTGCGAGGCGTACGTCCTCGCGAGGCGCTTG
GGGCTAGATGACACAGCCAAGCTCAAGGCCCTCCTTGGAGCGTCATGGGG
GCACAGGCGAGGCGGGCAAGGATAACACCTTGTCATCACCAACACGGTGG
CGGCGTGCGAGGCGTACGTCCTCGCGAGGCGCTTGGGGCTAGATGACACA
GCCAAGCTCAAGGCCCTCCTTGGAGCGTCATGGGGGCACAGGCGAGGCGG
GCAAGGATAA
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