mRNA_L-elsbetiae_contig1343.2643.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1343.2643.1
Unique NamemRNA_L-elsbetiae_contig1343.2643.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1343.2643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1343contigL-elsbetiae_contig1343:6201..7497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size507
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.354189-CDS-L-elsbetiae_contig1343:6200..66481622815514.354189-CDS-L-elsbetiae_contig1343:6200..6648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1343 6201..6648 +
1691682935.868395-CDS-L-elsbetiae_contig1343:6200..66481691682935.868395-CDS-L-elsbetiae_contig1343:6200..6648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1343 6201..6648 +
1622815514.3654497-CDS-L-elsbetiae_contig1343:7440..74961622815514.3654497-CDS-L-elsbetiae_contig1343:7440..7496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1343 7441..7496 +
1691682935.8786469-CDS-L-elsbetiae_contig1343:7440..74961691682935.8786469-CDS-L-elsbetiae_contig1343:7440..7496Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1343 7441..7496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1343.2643.1prot_L-elsbetiae_contig1343.2643.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1343 6201..7496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1343.2643.1

>prot_L-elsbetiae_contig1343.2643.1 ID=prot_L-elsbetiae_contig1343.2643.1|Name=mRNA_L-elsbetiae_contig1343.2643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=168bp
SITAAAAAAAAAAATSTTTTATATSVPPPAAAAAVRHGYGNGHDRHREVS
ACSITSLEGLGGDSSSMASLEGVGGVAAAAAAWRSVREDSGASSTILAGR
SASEQAGASPASPGHASAPPKTSAVREEEDTPRKVAVRGGDLPGQQKGYG
GEEPRRWEAGGRGRERES
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mRNA from alignment at L-elsbetiae_contig1343:6201..7497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1343.2643.1 ID=mRNA_L-elsbetiae_contig1343.2643.1|Name=mRNA_L-elsbetiae_contig1343.2643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1297bp|location=Sequence derived from alignment at L-elsbetiae_contig1343:6201..7497+ (Laminarionema elsbetiae ELsaHSoW15)
TCCATCACTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACTTCGAC
GACGACGACGGCGACGGCGACCTCCGTTCCGCCGCCCGCCGCGGCGGCGG
CAGTGCGCCATGGCTACGGTAACGGTCACGACCGCCACCGGGAGGTTTCT
GCCTGTTCCATCACATCGTTAGAGGGATTAGGGGGAGACAGTAGTTCCAT
GGCATCTTTAGAAGGAGTAGGGGGAGTAGCGGCGGCGGCGGCGGCGTGGA
GATCTGTCAGGGAGGATTCCGGCGCCAGCAGCACGATACTAGCGGGGAGG
AGCGCCTCGGAGCAGGCGGGTGCTTCCCCGGCCTCGCCGGGCCATGCTTC
GGCGCCGCCCAAGACGTCGGCCGTAAGGGAGGAAGAAGACACGCCGCGCA
AGGTCGCCGTACGGGGTGGTGACCTTCCTGGCCAGCAGAAGGGTTACGGT
GAGTGGGTAGAGGTAGTGTTTTATGTACCGGAGATAGGGGGGAGGAGTAC
GAAGCGAGCGAGTGGGGAGTGAGGGAGAGAGGGAGAGAGGGAGGGAGGTT
GTCCGCGTTCTCATTCCCGTGAAAGGAAAGTTTTTTTTTGAAGCAGCATT
TATTTGCCTGTTGTTATGTAGGATGGGCGGGGGCGTCTGGTGAGCGCTCT
CTCGTGAGGCTGCGGAAAGGAGGGGGGGGAGGGATTAGGCTGCAGGTCGC
ACATGGAACATGGCCTATAAGCGGTTGTACTTGGCGCGAATCAATTCATC
GCGTCCCAGCATCCACCAGCGATGTTCCTTGTCCCGTGTCGCCGTTGTAC
GGCGTATTGGCTGCCGCCCCGTACTATCTACCCCTAGAGACACACACACA
CACACACACACACACACACACACACACACACACACACGCAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACGCTCGTTTTCTTGCTC
TCCTGCGATCCACGCTGCCTCCCCCCCGCCCCGTCCGTCGTCGTGGGGAT
AGATTCACCGCTCCTAACCACTGCTGTGTCTGAACCAAACCATCGGGTGC
TCTTTACCAAACCAACCGCGTCATATTTTTCGCATCACGCCACACAACCC
CTGACCCCCCCCCCCCCCGGCGGGGTGCTTTATGACCAATCAACCGCATC
CCATCTCACATTACGCCGCACCTACACACGTTACCCCCCATCGCATATAT
CGCGTGTGTGGCATCATATGTATGCACGGAATGCCTGCAGGGGGCGAGGA
GCCGCGGCGGTGGGAGGCCGGAGGACGAGGCCGCGAGCGAGAATCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1343:6201..7497+

>mRNA_L-elsbetiae_contig1343.2643.1 ID=mRNA_L-elsbetiae_contig1343.2643.1|Name=mRNA_L-elsbetiae_contig1343.2643.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1008bp|location=Sequence derived from alignment at L-elsbetiae_contig1343:6201..7497+ (Laminarionema elsbetiae ELsaHSoW15)
TCCATCACTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACTTCGAC
GACGACGACGGCGACGGCGACCTCCGTTCCGCCGCCCGCCGCGGCGGCGG
CAGTGCGCCATGGCTACGGTAACGGTCACGACCGCCACCGGGAGGTTTCT
GCCTGTTCCATCACATCGTTAGAGGGATTAGGGGGAGACAGTAGTTCCAT
GGCATCTTTAGAAGGAGTAGGGGGAGTAGCGGCGGCGGCGGCGGCGTGGA
GATCTGTCAGGGAGGATTCCGGCGCCAGCAGCACGATACTAGCGGGGAGG
AGCGCCTCGGAGCAGGCGGGTGCTTCCCCGGCCTCGCCGGGCCATGCTTC
GGCGCCGCCCAAGACGTCGGCCGTAAGGGAGGAAGAAGACACGCCGCGCA
AGGTCGCCGTACGGGGTGGTGACCTTCCTGGCCAGCAGAAGGGTTACGTC
CATCACTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCACTTCGACGA
CGACGACGGCGACGGCGACCTCCGTTCCGCCGCCCGCCGCGGCGGCGGCA
GTGCGCCATGGCTACGGTAACGGTCACGACCGCCACCGGGAGGTTTCTGC
CTGTTCCATCACATCGTTAGAGGGATTAGGGGGAGACAGTAGTTCCATGG
CATCTTTAGAAGGAGTAGGGGGAGTAGCGGCGGCGGCGGCGGCGTGGAGA
TCTGTCAGGGAGGATTCCGGCGCCAGCAGCACGATACTAGCGGGGAGGAG
CGCCTCGGAGCAGGCGGGTGCTTCCCCGGCCTCGCCGGGCCATGCTTCGG
CGCCGCCCAAGACGTCGGCCGTAAGGGAGGAAGAAGACACGCCGCGCAAG
GTCGCCGTACGGGGTGGTGACCTTCCTGGCCAGCAGAAGGGTTACGGGGG
CGAGGAGCCGCGGCGGTGGGAGGCCGGAGGACGAGGCCGCGAGCGAGAAT
CTGGGGCGAGGAGCCGCGGCGGTGGGAGGCCGGAGGACGAGGCCGCGAGC
GAGAATCT
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